Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47106 * 2 1 4 4 C 1.53007 * 109.46875 * 119.99245 * 2 1 3 5 5 C 1.53001 * 109.46873 * 175.10710 * 4 2 1 6 6 H 1.09002 * 109.46788 * 54.40251 * 5 4 2 7 7 C 1.52993 * 109.47310 * 294.39930 * 5 4 2 8 8 C 1.53000 * 109.47103 * 174.39852 * 5 4 2 9 9 C 1.52999 * 109.47135 * 185.00240 * 8 5 4 10 10 H 1.08999 * 109.47008 * 304.99492 * 9 8 5 11 11 C 1.53001 * 109.46832 * 184.99988 * 9 8 5 12 12 N 1.46499 * 109.47039 * 65.00332 * 9 8 5 13 13 C 1.39685 * 119.99345 * 204.99998 * 12 9 8 14 14 C 1.39330 * 119.95601 * 359.97438 * 13 12 9 15 15 C 1.38479 * 120.42433 * 179.72169 * 14 13 12 16 16 C 1.37689 * 120.32527 * 0.28133 * 15 14 13 17 17 C 1.40745 * 119.89322 * 359.97438 * 16 15 14 18 18 C 1.41408 * 120.20673 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00320 * 28.96014 * 18 17 16 20 20 C 1.39935 * 119.99649 * 208.96488 * 18 17 16 21 21 N 1.30829 * 120.00420 * 10.48514 * 20 18 17 22 22 Si 1.86805 * 119.99495 * 190.48688 * 20 18 17 23 23 H 1.48492 * 109.47236 * 89.99849 * 22 20 18 24 24 H 1.48500 * 109.47011 * 209.99847 * 22 20 18 25 25 H 1.48498 * 109.47097 * 329.99520 * 22 20 18 26 26 C 1.38290 * 119.94817 * 180.27867 * 13 12 9 27 27 H 1.08997 * 109.46958 * 184.88184 * 1 2 3 28 28 H 1.09006 * 109.46969 * 304.88483 * 1 2 3 29 29 H 1.08997 * 109.46713 * 64.88402 * 1 2 3 30 30 H 1.08995 * 109.47567 * 239.99809 * 2 1 3 31 31 H 1.09003 * 109.47094 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46452 * 299.99631 * 3 2 1 33 33 H 1.08995 * 109.47063 * 59.99500 * 3 2 1 34 34 H 1.08995 * 109.46764 * 55.10842 * 4 2 1 35 35 H 1.08998 * 109.46935 * 295.11058 * 4 2 1 36 36 H 1.09003 * 109.47165 * 64.74527 * 7 5 4 37 37 H 1.09001 * 109.47281 * 184.74307 * 7 5 4 38 38 H 1.08998 * 109.47669 * 304.74858 * 7 5 4 39 39 H 1.09006 * 109.47115 * 64.99853 * 8 5 4 40 40 H 1.09007 * 109.46923 * 305.00380 * 8 5 4 41 41 H 1.09000 * 109.46992 * 179.97438 * 11 9 8 42 42 H 1.08996 * 109.47204 * 299.99991 * 11 9 8 43 43 H 1.09002 * 109.47031 * 59.99889 * 11 9 8 44 44 H 0.96992 * 120.00272 * 24.99733 * 12 9 8 45 45 H 1.07999 * 119.78900 * 0.02562 * 14 13 12 46 46 H 1.08003 * 119.83840 * 180.29581 * 15 14 13 47 47 H 1.08002 * 120.05314 * 179.97438 * 16 15 14 48 48 H 0.97001 * 119.99791 * 180.02562 * 21 20 18 49 49 H 1.07994 * 120.16027 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5651 -0.8286 1.1894 6 1 3.9937 0.1631 1.0444 7 6 3.9671 -1.7335 0.0232 8 6 4.0864 -1.4229 2.4994 9 6 5.6163 -1.4150 2.4897 10 1 5.9767 -1.9357 1.6025 11 6 6.1378 -2.1215 3.7427 12 7 6.0974 -0.0314 2.4734 13 6 7.3592 0.2631 1.9514 14 6 8.1594 -0.7599 1.4470 15 6 9.4095 -0.4782 0.9220 16 6 9.8779 0.8163 0.8980 17 6 9.0829 1.8594 1.4088 18 6 9.5576 3.1913 1.3880 19 1 10.2487 3.5064 0.6202 20 6 9.1318 4.1011 2.3623 21 7 8.4637 3.6784 3.4046 22 14 9.5175 5.9192 2.1744 23 1 8.4186 6.5839 1.4289 24 1 9.6497 6.5385 3.5176 25 1 10.7907 6.0805 1.4274 26 6 7.8148 1.5687 1.9417 27 1 -0.3633 -1.0239 0.0875 28 1 -0.3633 0.5878 0.8430 29 1 -0.3632 0.4362 -0.9305 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6068 -1.7203 1.2944 35 1 1.7499 -0.1591 2.1371 36 1 3.6697 -1.2686 -0.9168 37 1 5.0475 -1.8781 0.0311 38 1 3.4706 -2.6986 0.1241 39 1 3.7288 -2.4476 2.6011 40 1 3.7252 -0.8271 3.3378 41 1 7.2277 -2.1164 3.7356 42 1 5.7773 -1.6010 4.6299 43 1 5.7797 -3.1510 3.7549 44 1 5.5399 0.6801 2.8250 45 1 7.8006 -1.7784 1.4611 46 1 10.0200 -1.2779 0.5292 47 1 10.8536 1.0310 0.4879 48 1 8.1683 4.3092 4.0798 49 1 7.1972 2.3618 2.3365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308769992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -32.620587 kcal Electronic energy + Delta-G solvation = -23507.580444 eV Core-core repulsion = 20431.987616 eV Total energy + Delta-G solvation = -3075.592828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.06886 -38.89379 -37.13849 -35.36774 -34.08460 -32.01369 -31.30297 -28.64226 -28.03732 -27.74949 -27.26692 -26.95895 -23.27666 -22.62150 -21.81443 -20.77632 -20.21968 -19.03292 -17.68398 -16.69945 -16.59791 -16.23906 -16.17875 -15.74362 -14.98914 -14.82266 -14.77233 -14.51314 -14.11139 -13.97080 -13.91332 -13.56158 -13.28182 -13.20252 -13.01245 -12.87473 -12.81982 -12.69898 -12.52565 -12.44681 -12.37265 -12.13817 -12.07524 -11.91868 -11.64301 -11.47195 -11.29321 -11.17303 -11.16026 -11.04792 -10.89359 -10.41732 -9.16272 -8.54156 -7.81615 -6.32113 1.11489 1.36772 1.38200 1.50660 1.59117 2.24506 2.85071 2.93086 3.69140 3.87918 3.95638 3.99627 4.13360 4.28323 4.29784 4.43143 4.54822 4.55702 4.63393 4.76490 4.78697 4.80599 4.81209 4.86012 4.91401 4.98447 5.00514 5.04698 5.05757 5.10921 5.15129 5.19476 5.20503 5.23203 5.35463 5.36615 5.38202 5.44810 5.49378 5.54029 5.63103 5.65244 5.69932 6.00906 6.14253 6.25684 6.32150 6.63800 6.99662 7.09576 7.13866 7.31145 8.45001 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004299 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.495245 B = 6511.829820 C = 7676.499537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.102 4.102 5 C -0.091 4.091 6 H 0.054 0.946 7 C -0.144 4.144 8 C -0.110 4.110 9 C 0.151 3.849 10 H 0.071 0.929 11 C -0.163 4.163 12 N -0.743 5.743 13 C 0.226 3.774 14 C -0.293 4.293 15 C -0.068 4.068 16 C -0.284 4.284 17 C 0.108 3.892 18 C -0.506 4.506 19 H 0.068 0.932 20 C 0.035 3.965 21 N -0.831 5.831 22 Si 0.980 3.020 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.252 4.252 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.388 0.612 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.087 0.913 48 H 0.282 0.718 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.160 -8.818 -2.049 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.139 4.139 5 C -0.109 4.109 6 H 0.073 0.927 7 C -0.201 4.201 8 C -0.148 4.148 9 C 0.046 3.954 10 H 0.089 0.911 11 C -0.222 4.222 12 N -0.374 5.374 13 C 0.124 3.876 14 C -0.316 4.316 15 C -0.086 4.086 16 C -0.305 4.305 17 C 0.105 3.895 18 C -0.537 4.537 19 H 0.086 0.914 20 C -0.178 4.178 21 N -0.459 5.459 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.193 1.193 25 H -0.185 1.185 26 C -0.276 4.276 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.221 0.779 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.292 -8.962 -1.849 17.821 hybrid contribution 0.506 1.363 0.208 1.469 sum -14.787 -7.599 -1.641 16.706 Atomic orbital electron populations 1.21816 0.94440 1.02079 1.01737 1.21146 0.96135 0.95604 0.98691 1.21892 1.00452 0.96856 1.01525 1.21649 0.94003 1.00766 0.97512 1.21120 0.95795 0.99204 0.94822 0.92749 1.21865 1.00670 0.99778 0.97828 1.21849 0.92739 1.02623 0.97618 1.20956 0.94366 0.82425 0.97679 0.91067 1.22253 1.00617 1.00985 0.98301 1.44626 1.15658 1.07879 1.69236 1.17734 0.85634 0.92855 0.91357 1.20231 0.97690 0.97128 1.16519 1.20651 0.95351 0.95384 0.97231 1.21045 1.00310 0.93619 1.15516 1.17705 0.90457 0.93086 0.88250 1.19787 1.25928 0.95762 1.12233 0.91366 1.26652 0.92803 1.05105 0.93286 1.69913 1.30267 1.37760 1.07914 0.85247 0.79651 0.76407 0.78594 1.18806 1.19317 1.18503 1.20693 0.98113 0.94089 1.14699 0.91940 0.92800 0.92657 0.91326 0.94045 0.92717 0.92911 0.90848 0.92272 0.93107 0.93990 0.91374 0.88969 0.91688 0.94532 0.93082 0.90056 0.77861 0.86961 0.86623 0.89476 0.90787 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 2 C -0.10 -1.80 2.79 -10.79 -0.03 -1.83 16 3 C -0.15 -3.26 8.95 71.98 0.64 -2.61 16 4 C -0.10 -1.86 4.15 30.60 0.13 -1.73 16 5 C -0.09 -2.03 2.20 -10.80 -0.02 -2.05 16 6 H 0.05 1.53 5.79 -2.39 -0.01 1.52 16 7 C -0.14 -3.17 8.71 71.98 0.63 -2.54 16 8 C -0.11 -2.38 4.22 30.59 0.13 -2.25 16 9 C 0.15 4.25 2.13 44.99 0.10 4.35 16 10 H 0.07 2.12 4.58 -2.39 -0.01 2.11 16 11 C -0.16 -4.38 9.42 71.98 0.68 -3.70 16 12 N -0.74 -27.27 4.62 -319.11 -1.47 -28.75 16 13 C 0.23 10.47 6.63 38.17 0.25 10.72 16 14 C -0.29 -12.97 8.85 22.59 0.20 -12.77 16 15 C -0.07 -3.11 10.02 22.20 0.22 -2.89 16 16 C -0.28 -14.93 9.79 22.75 0.22 -14.71 16 17 C 0.11 6.17 5.55 -21.31 -0.12 6.05 16 18 C -0.51 -28.99 9.06 23.46 0.21 -28.78 16 19 H 0.07 3.80 7.87 -2.91 -0.02 3.78 16 20 C 0.03 1.83 5.26 85.25 0.45 2.28 16 21 N -0.83 -45.42 10.83 21.82 0.24 -45.19 16 22 Si 0.98 40.35 29.57 68.60 2.03 42.38 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 C -0.25 -13.66 8.49 22.86 0.19 -13.47 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.31 6.47 -2.39 -0.02 1.29 16 31 H 0.04 1.07 6.45 -2.39 -0.02 1.05 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.12 6.71 -2.39 -0.02 1.10 16 37 H 0.04 1.08 6.26 -2.39 -0.01 1.06 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 41 H 0.04 1.16 7.69 -2.39 -0.02 1.14 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.39 14.13 8.61 -92.71 -0.80 13.33 16 45 H 0.11 4.34 6.07 -2.91 -0.02 4.32 16 46 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 47 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 48 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 49 H 0.10 5.64 6.22 -2.91 -0.02 5.62 16 Total: -1.00 -61.49 376.61 5.45 -56.04 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: 0.11 Total: 42.98 kcal Atomic # 6 Polarization: -72.01 SS G_CDS: 4.54 Total: -67.46 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.24 Total: -73.94 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -61.49 5.45 -56.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308769992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.422 kcal (2) G-P(sol) polarization free energy of solvation -61.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds