Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47207 * 2 1 4 4 C 1.52998 * 109.47354 * 120.00446 * 2 1 3 5 5 C 1.53007 * 109.47212 * 65.35459 * 4 2 1 6 6 H 1.08999 * 109.47173 * 305.80177 * 5 4 2 7 7 C 1.53003 * 109.46984 * 65.79827 * 5 4 2 8 8 C 1.52996 * 109.47284 * 185.80129 * 5 4 2 9 9 C 1.52995 * 109.47248 * 175.00332 * 8 5 4 10 10 H 1.09000 * 109.47705 * 54.99789 * 9 8 5 11 11 C 1.52998 * 109.47163 * 175.00058 * 9 8 5 12 12 N 1.46505 * 109.47045 * 294.99560 * 9 8 5 13 13 C 1.39682 * 119.99934 * 154.99991 * 12 9 8 14 14 C 1.39325 * 119.95346 * 0.02562 * 13 12 9 15 15 C 1.38487 * 120.42355 * 179.97438 * 14 13 12 16 16 C 1.37685 * 120.32534 * 359.97438 * 15 14 13 17 17 C 1.40750 * 119.89316 * 0.02562 * 16 15 14 18 18 C 1.41407 * 120.20557 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99983 * 28.53869 * 18 17 16 20 20 C 1.39926 * 119.99697 * 208.53640 * 18 17 16 21 21 N 1.30831 * 120.00338 * 11.14594 * 20 18 17 22 22 Si 1.86805 * 119.99919 * 191.15110 * 20 18 17 23 23 H 1.48499 * 109.47008 * 89.99729 * 22 20 18 24 24 H 1.48496 * 109.46890 * 210.00130 * 22 20 18 25 25 H 1.48498 * 109.46930 * 329.99916 * 22 20 18 26 26 C 1.38284 * 119.94687 * 179.73158 * 13 12 9 27 27 H 1.08998 * 109.46950 * 299.99925 * 1 2 3 28 28 H 1.08998 * 109.47252 * 59.99712 * 1 2 3 29 29 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46514 * 239.99981 * 2 1 3 31 31 H 1.09006 * 109.47191 * 64.85033 * 3 2 1 32 32 H 1.09005 * 109.47370 * 184.84275 * 3 2 1 33 33 H 1.09003 * 109.47374 * 304.84655 * 3 2 1 34 34 H 1.09003 * 109.46781 * 305.36003 * 4 2 1 35 35 H 1.08992 * 109.47221 * 185.35536 * 4 2 1 36 36 H 1.09001 * 109.47314 * 295.68362 * 7 5 4 37 37 H 1.09000 * 109.46801 * 55.68573 * 7 5 4 38 38 H 1.08999 * 109.47132 * 175.68751 * 7 5 4 39 39 H 1.08994 * 109.47028 * 54.99786 * 8 5 4 40 40 H 1.09005 * 109.47085 * 294.99996 * 8 5 4 41 41 H 1.09001 * 109.47495 * 59.99570 * 11 9 8 42 42 H 1.09003 * 109.47093 * 179.97438 * 11 9 8 43 43 H 1.09000 * 109.46906 * 299.99193 * 11 9 8 44 44 H 0.97003 * 119.99618 * 335.00219 * 12 9 8 45 45 H 1.07999 * 119.78976 * 359.97438 * 14 13 12 46 46 H 1.08002 * 119.83328 * 180.02562 * 15 14 13 47 47 H 1.08000 * 120.05121 * 180.02562 * 16 15 14 48 48 H 0.97001 * 119.99882 * 179.97438 * 21 20 18 49 49 H 1.07994 * 120.16821 * 359.97205 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6430 -2.1975 1.1836 6 1 0.5668 -2.2778 1.0308 7 6 2.3748 -2.8713 0.0210 8 6 2.0248 -2.8871 2.4949 9 6 1.5170 -4.3302 2.4789 10 1 1.8971 -4.8395 1.5933 11 6 2.0051 -5.0566 3.7338 12 7 0.0522 -4.3322 2.4522 13 6 -0.6353 -5.4270 1.9233 14 6 0.0730 -6.5170 1.4218 15 6 -0.5987 -7.6078 0.8956 16 6 -1.9750 -7.6271 0.8629 17 6 -2.7041 -6.5333 1.3659 18 6 -4.1177 -6.5460 1.3352 19 1 -4.6504 -7.4845 1.3773 20 6 -4.8264 -5.3424 1.2501 21 7 -4.1947 -4.2289 0.9807 22 14 -6.6746 -5.3257 1.5214 23 1 -6.9615 -5.1052 2.9617 24 1 -7.2822 -4.2314 0.7224 25 1 -7.2492 -6.6272 1.0959 26 6 -2.0180 -5.4301 1.9038 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.7494 1.9306 0.9303 32 1 3.1266 1.4437 -0.0868 33 1 1.6076 1.9807 -0.8434 34 1 1.6005 -0.2659 2.1366 35 1 3.1258 -0.6390 1.2984 36 1 2.0449 -2.4311 -0.9200 37 1 3.4489 -2.7246 0.1340 38 1 2.1517 -3.9382 0.0208 39 1 1.5742 -2.3526 3.3310 40 1 3.1094 -2.8848 2.6042 41 1 1.6250 -4.5474 4.6195 42 1 1.6429 -6.0846 3.7226 43 1 3.0949 -5.0553 3.7536 44 1 -0.4402 -3.5731 2.8019 45 1 1.1528 -6.5111 1.4434 46 1 -0.0401 -8.4477 0.5098 47 1 -2.4943 -8.4803 0.4520 48 1 -4.6862 -3.3946 0.9214 49 1 -2.5682 -4.5881 2.2970 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308769993.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = -21.473070 kcal Electronic energy + Delta-G solvation = -23587.810990 eV Core-core repulsion = 20512.701555 eV Total energy + Delta-G solvation = -3075.109435 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.68363 -37.47528 -35.79192 -33.60483 -32.73305 -30.63154 -29.36531 -27.15834 -27.00166 -26.74835 -26.16442 -25.08758 -21.84449 -21.01963 -20.29286 -19.45887 -19.18544 -17.18296 -15.97826 -15.45612 -15.16239 -14.84737 -14.55932 -14.35236 -13.96140 -13.77948 -13.30381 -12.93858 -12.73522 -12.55953 -12.40282 -12.31201 -12.13984 -12.07411 -11.67248 -11.62434 -11.44968 -11.35905 -11.15183 -11.12417 -11.02490 -10.96621 -10.74848 -10.43253 -10.36626 -10.21971 -10.13705 -9.88963 -9.55042 -9.37545 -9.18320 -8.70330 -7.19886 -6.62065 -6.06471 -4.27119 2.92268 3.13473 3.17209 3.28422 3.39024 4.03479 4.39093 4.65780 4.81515 4.86043 4.92714 5.11391 5.24968 5.27692 5.53877 5.57679 5.62739 5.65232 5.69377 5.75012 5.83197 5.86424 5.90065 5.91748 5.97536 6.03374 6.04886 6.11515 6.13225 6.25034 6.32570 6.34768 6.36172 6.39560 6.55967 6.60096 6.68866 6.71545 6.94700 7.18518 7.21301 7.46087 7.52319 7.89014 8.02189 8.17357 8.25435 8.57430 8.80439 8.92309 9.08119 9.18737 10.36442 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.004622 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.119059 B = 6056.849041 C = 7550.046490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.094 4.094 6 H 0.084 0.916 7 C -0.147 4.147 8 C -0.119 4.119 9 C 0.154 3.846 10 H 0.076 0.924 11 C -0.167 4.167 12 N -0.751 5.751 13 C 0.218 3.782 14 C -0.294 4.294 15 C -0.070 4.070 16 C -0.256 4.256 17 C 0.139 3.861 18 C -0.467 4.467 19 H 0.074 0.926 20 C 0.076 3.924 21 N -0.801 5.801 22 Si 0.905 3.095 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.264 1.264 26 C -0.225 4.225 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.387 0.613 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.275 0.725 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.343 8.704 1.025 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.112 4.112 6 H 0.102 0.898 7 C -0.204 4.204 8 C -0.157 4.157 9 C 0.048 3.952 10 H 0.094 0.906 11 C -0.226 4.226 12 N -0.384 5.384 13 C 0.119 3.881 14 C -0.317 4.317 15 C -0.089 4.089 16 C -0.276 4.276 17 C 0.136 3.864 18 C -0.498 4.498 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.428 5.428 22 Si 0.730 3.270 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.188 1.188 26 C -0.249 4.249 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.220 0.780 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.483 8.894 0.945 14.555 hybrid contribution -1.025 0.375 0.190 1.107 sum 10.459 9.269 1.135 14.021 Atomic orbital electron populations 1.21898 0.94988 1.02642 1.01224 1.21156 0.96173 0.95557 0.98810 1.21847 1.00499 0.96533 1.01490 1.21694 1.00164 0.95181 0.97444 1.21190 1.01796 0.93561 0.94683 0.89777 1.21891 0.99281 1.01213 0.98007 1.21893 1.00586 0.95650 0.97567 1.20715 0.82433 0.94607 0.97487 0.90614 1.22309 0.99696 1.01794 0.98800 1.44502 1.03299 1.20054 1.70552 1.17647 0.91418 0.86469 0.92547 1.19919 0.96609 0.97235 1.17939 1.20292 0.94283 0.96009 0.98300 1.20897 0.93074 1.01558 1.12090 1.17326 0.92896 0.90005 0.86197 1.19538 0.91554 0.93153 1.45505 0.90813 1.25822 1.00500 0.95166 0.92494 1.69840 1.37679 0.99565 1.35714 0.86367 0.82768 0.78779 0.79038 1.19542 1.20495 1.18800 1.20769 0.89998 1.02963 1.11134 0.92975 0.93187 0.91665 0.91121 0.92940 0.93098 0.92977 0.92321 0.92508 0.92897 0.93445 0.92117 0.92072 0.91594 0.93123 0.92040 0.93155 0.77953 0.89590 0.89802 0.89524 0.91424 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.96 37.16 0.33 -1.47 16 2 C -0.10 -1.06 2.80 -90.62 -0.25 -1.31 16 3 C -0.15 -1.36 9.19 37.15 0.34 -1.02 16 4 C -0.11 -1.16 4.14 -26.73 -0.11 -1.27 16 5 C -0.09 -1.18 2.21 -90.62 -0.20 -1.38 16 6 H 0.08 1.27 5.80 -51.93 -0.30 0.97 16 7 C -0.15 -1.85 8.72 37.16 0.32 -1.52 16 8 C -0.12 -1.46 4.22 -26.74 -0.11 -1.57 16 9 C 0.15 2.31 2.13 -67.93 -0.14 2.16 16 10 H 0.08 1.22 4.59 -51.93 -0.24 0.98 16 11 C -0.17 -2.36 9.42 37.16 0.35 -2.01 16 12 N -0.75 -13.82 4.62 -52.22 -0.24 -14.06 16 13 C 0.22 4.98 6.63 -83.86 -0.56 4.43 16 14 C -0.29 -6.61 8.85 -39.09 -0.35 -6.95 16 15 C -0.07 -1.62 10.02 -39.69 -0.40 -2.02 16 16 C -0.26 -6.52 9.79 -38.83 -0.38 -6.90 16 17 C 0.14 3.79 5.55 -106.85 -0.59 3.20 16 18 C -0.47 -12.75 9.06 -37.74 -0.34 -13.10 16 19 H 0.07 1.95 7.87 -52.49 -0.41 1.54 16 20 C 0.08 1.96 5.24 -17.35 -0.09 1.87 16 21 N -0.80 -21.07 10.86 55.55 0.60 -20.46 16 22 Si 0.91 19.25 29.57 -169.99 -5.03 14.22 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.22 -5.85 8.49 -38.67 -0.33 -6.17 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.91 6.46 -51.93 -0.34 0.57 16 30 H 0.07 0.79 6.45 -51.92 -0.34 0.45 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.66 6.68 -51.93 -0.35 0.31 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.87 6.28 -51.93 -0.33 0.54 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.39 6.95 8.61 -40.82 -0.35 6.60 16 45 H 0.09 1.75 6.07 -52.49 -0.32 1.43 16 46 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 48 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 49 H 0.12 3.16 6.24 -52.49 -0.33 2.83 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -27.24 376.67 -10.24 -37.49 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.75 Total: 12.17 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: -2.51 Total: -35.03 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.36 Total: -34.52 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.24 -10.24 -37.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308769993.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.014 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds