Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47207 * 2 1 4 4 C 1.52998 * 109.47354 * 120.00446 * 2 1 3 5 5 C 1.53007 * 109.47212 * 65.35459 * 4 2 1 6 6 H 1.08999 * 109.47173 * 305.80177 * 5 4 2 7 7 C 1.53003 * 109.46984 * 65.79827 * 5 4 2 8 8 C 1.52996 * 109.47284 * 185.80129 * 5 4 2 9 9 C 1.52995 * 109.47248 * 175.00332 * 8 5 4 10 10 H 1.09000 * 109.47705 * 54.99789 * 9 8 5 11 11 C 1.52998 * 109.47163 * 175.00058 * 9 8 5 12 12 N 1.46505 * 109.47045 * 294.99560 * 9 8 5 13 13 C 1.39682 * 119.99934 * 154.99991 * 12 9 8 14 14 C 1.39325 * 119.95346 * 0.02562 * 13 12 9 15 15 C 1.38487 * 120.42355 * 179.97438 * 14 13 12 16 16 C 1.37685 * 120.32534 * 359.97438 * 15 14 13 17 17 C 1.40750 * 119.89316 * 0.02562 * 16 15 14 18 18 C 1.41407 * 120.20557 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99983 * 28.53869 * 18 17 16 20 20 C 1.39926 * 119.99697 * 208.53640 * 18 17 16 21 21 N 1.30831 * 120.00338 * 11.14594 * 20 18 17 22 22 Si 1.86805 * 119.99919 * 191.15110 * 20 18 17 23 23 H 1.48499 * 109.47008 * 89.99729 * 22 20 18 24 24 H 1.48496 * 109.46890 * 210.00130 * 22 20 18 25 25 H 1.48498 * 109.46930 * 329.99916 * 22 20 18 26 26 C 1.38284 * 119.94687 * 179.73158 * 13 12 9 27 27 H 1.08998 * 109.46950 * 299.99925 * 1 2 3 28 28 H 1.08998 * 109.47252 * 59.99712 * 1 2 3 29 29 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46514 * 239.99981 * 2 1 3 31 31 H 1.09006 * 109.47191 * 64.85033 * 3 2 1 32 32 H 1.09005 * 109.47370 * 184.84275 * 3 2 1 33 33 H 1.09003 * 109.47374 * 304.84655 * 3 2 1 34 34 H 1.09003 * 109.46781 * 305.36003 * 4 2 1 35 35 H 1.08992 * 109.47221 * 185.35536 * 4 2 1 36 36 H 1.09001 * 109.47314 * 295.68362 * 7 5 4 37 37 H 1.09000 * 109.46801 * 55.68573 * 7 5 4 38 38 H 1.08999 * 109.47132 * 175.68751 * 7 5 4 39 39 H 1.08994 * 109.47028 * 54.99786 * 8 5 4 40 40 H 1.09005 * 109.47085 * 294.99996 * 8 5 4 41 41 H 1.09001 * 109.47495 * 59.99570 * 11 9 8 42 42 H 1.09003 * 109.47093 * 179.97438 * 11 9 8 43 43 H 1.09000 * 109.46906 * 299.99193 * 11 9 8 44 44 H 0.97003 * 119.99618 * 335.00219 * 12 9 8 45 45 H 1.07999 * 119.78976 * 359.97438 * 14 13 12 46 46 H 1.08002 * 119.83328 * 180.02562 * 15 14 13 47 47 H 1.08000 * 120.05121 * 180.02562 * 16 15 14 48 48 H 0.97001 * 119.99882 * 179.97438 * 21 20 18 49 49 H 1.07994 * 120.16821 * 359.97205 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6430 -2.1975 1.1836 6 1 0.5668 -2.2778 1.0308 7 6 2.3748 -2.8713 0.0210 8 6 2.0248 -2.8871 2.4949 9 6 1.5170 -4.3302 2.4789 10 1 1.8971 -4.8395 1.5933 11 6 2.0051 -5.0566 3.7338 12 7 0.0522 -4.3322 2.4522 13 6 -0.6353 -5.4270 1.9233 14 6 0.0730 -6.5170 1.4218 15 6 -0.5987 -7.6078 0.8956 16 6 -1.9750 -7.6271 0.8629 17 6 -2.7041 -6.5333 1.3659 18 6 -4.1177 -6.5460 1.3352 19 1 -4.6504 -7.4845 1.3773 20 6 -4.8264 -5.3424 1.2501 21 7 -4.1947 -4.2289 0.9807 22 14 -6.6746 -5.3257 1.5214 23 1 -6.9615 -5.1052 2.9617 24 1 -7.2822 -4.2314 0.7224 25 1 -7.2492 -6.6272 1.0959 26 6 -2.0180 -5.4301 1.9038 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.7494 1.9306 0.9303 32 1 3.1266 1.4437 -0.0868 33 1 1.6076 1.9807 -0.8434 34 1 1.6005 -0.2659 2.1366 35 1 3.1258 -0.6390 1.2984 36 1 2.0449 -2.4311 -0.9200 37 1 3.4489 -2.7246 0.1340 38 1 2.1517 -3.9382 0.0208 39 1 1.5742 -2.3526 3.3310 40 1 3.1094 -2.8848 2.6042 41 1 1.6250 -4.5474 4.6195 42 1 1.6429 -6.0846 3.7226 43 1 3.0949 -5.0553 3.7536 44 1 -0.4402 -3.5731 2.8019 45 1 1.1528 -6.5111 1.4434 46 1 -0.0401 -8.4477 0.5098 47 1 -2.4943 -8.4803 0.4520 48 1 -4.6862 -3.3946 0.9214 49 1 -2.5682 -4.5881 2.2970 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308769993.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = -32.694468 kcal Electronic energy + Delta-G solvation = -23588.297587 eV Core-core repulsion = 20512.701555 eV Total energy + Delta-G solvation = -3075.596032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.06701 -38.89356 -37.13898 -35.36921 -34.09016 -32.01270 -31.30467 -28.63782 -28.03746 -27.75954 -27.26753 -26.95759 -23.27483 -22.62243 -21.81343 -20.77510 -20.22916 -19.03016 -17.68305 -16.69448 -16.60654 -16.24031 -16.18615 -15.74981 -14.98043 -14.81836 -14.77276 -14.53055 -14.07486 -13.95107 -13.90486 -13.59264 -13.31755 -13.23360 -13.01559 -12.86654 -12.76735 -12.70735 -12.56802 -12.48455 -12.32096 -12.14031 -12.05855 -11.93200 -11.64038 -11.48068 -11.29957 -11.20895 -11.12787 -11.02872 -10.90405 -10.41604 -9.16818 -8.54837 -7.81441 -6.31841 1.11398 1.36810 1.38090 1.50518 1.59098 2.24373 2.85295 2.92772 3.69152 3.88313 3.94990 3.99472 4.13231 4.28347 4.29565 4.43316 4.54846 4.55636 4.62913 4.76680 4.78666 4.80045 4.80654 4.86168 4.91810 4.97534 5.00534 5.04395 5.05175 5.10181 5.15492 5.18840 5.20368 5.23140 5.35292 5.36216 5.38197 5.45100 5.49301 5.53794 5.62617 5.65624 5.69735 6.00964 6.14319 6.25378 6.32121 6.63736 6.99596 7.09477 7.13922 7.31184 8.44630 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.004622 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.119059 B = 6056.849041 C = 7550.046490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.092 4.092 6 H 0.051 0.949 7 C -0.144 4.144 8 C -0.110 4.110 9 C 0.150 3.850 10 H 0.068 0.932 11 C -0.162 4.162 12 N -0.743 5.743 13 C 0.227 3.773 14 C -0.294 4.294 15 C -0.067 4.067 16 C -0.285 4.285 17 C 0.108 3.892 18 C -0.507 4.507 19 H 0.068 0.932 20 C 0.035 3.965 21 N -0.830 5.830 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.252 4.252 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.388 0.612 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.087 0.913 48 H 0.282 0.718 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.321 9.900 1.565 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.138 4.138 5 C -0.110 4.110 6 H 0.070 0.930 7 C -0.201 4.201 8 C -0.148 4.148 9 C 0.045 3.955 10 H 0.086 0.914 11 C -0.220 4.220 12 N -0.374 5.374 13 C 0.125 3.875 14 C -0.316 4.316 15 C -0.086 4.086 16 C -0.306 4.306 17 C 0.106 3.894 18 C -0.537 4.537 19 H 0.086 0.914 20 C -0.178 4.178 21 N -0.457 5.457 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.193 1.193 25 H -0.185 1.185 26 C -0.277 4.277 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.221 0.779 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.505 10.106 1.497 16.934 hybrid contribution -1.493 0.022 0.008 1.493 sum 12.012 10.128 1.505 15.784 Atomic orbital electron populations 1.21877 0.96402 1.00870 1.01462 1.21145 0.94896 0.96806 0.98741 1.21808 1.01221 0.95150 1.01807 1.21635 1.01176 0.93570 0.97411 1.21123 0.99851 0.95111 0.94947 0.93027 1.21859 1.00644 0.99724 0.97856 1.21843 1.02062 0.93405 0.97456 1.20964 0.79936 0.96845 0.97779 0.91369 1.22242 1.01594 1.00097 0.98092 1.44631 1.04966 1.18626 1.69185 1.17726 0.90718 0.87688 0.91387 1.20229 0.97904 0.96617 1.16886 1.20651 0.93614 0.97120 0.97199 1.21040 0.94342 1.01539 1.13635 1.17703 0.93584 0.91183 0.86963 1.19783 0.92247 0.93832 1.47868 0.91373 1.26644 1.05325 0.94285 0.91529 1.69915 1.39648 1.00180 1.35935 0.85258 0.76512 0.78990 0.79210 1.18789 1.19335 1.18503 1.20679 0.91436 1.02541 1.13013 0.92822 0.92882 0.94386 0.91524 0.92608 0.91878 0.92760 0.92154 0.90712 0.93381 0.91203 0.94150 0.91526 0.88884 0.92815 0.94270 0.90120 0.77867 0.86970 0.86636 0.89489 0.90796 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.96 71.98 0.65 -2.93 16 2 C -0.10 -1.95 2.80 -10.80 -0.03 -1.98 16 3 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 4 C -0.10 -1.94 4.14 30.60 0.13 -1.81 16 5 C -0.09 -2.17 2.21 -10.79 -0.02 -2.19 16 6 H 0.05 1.58 5.80 -2.39 -0.01 1.56 16 7 C -0.14 -3.39 8.72 71.98 0.63 -2.76 16 8 C -0.11 -2.41 4.22 30.59 0.13 -2.28 16 9 C 0.15 4.22 2.13 44.99 0.10 4.32 16 10 H 0.07 2.07 4.59 -2.39 -0.01 2.06 16 11 C -0.16 -4.15 9.42 71.98 0.68 -3.48 16 12 N -0.74 -27.30 4.62 -319.12 -1.47 -28.77 16 13 C 0.23 10.51 6.63 38.16 0.25 10.76 16 14 C -0.29 -13.02 8.85 22.59 0.20 -12.82 16 15 C -0.07 -3.10 10.02 22.20 0.22 -2.88 16 16 C -0.28 -14.98 9.79 22.75 0.22 -14.76 16 17 C 0.11 6.21 5.55 -21.31 -0.12 6.09 16 18 C -0.51 -29.01 9.06 23.46 0.21 -28.80 16 19 H 0.07 3.80 7.87 -2.91 -0.02 3.78 16 20 C 0.04 1.88 5.24 85.25 0.45 2.33 16 21 N -0.83 -45.27 10.86 21.82 0.24 -45.03 16 22 Si 0.98 40.33 29.57 68.60 2.03 42.36 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 C -0.25 -13.71 8.49 22.86 0.19 -13.52 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 1.10 6.46 -2.39 -0.02 1.09 16 30 H 0.07 1.39 6.45 -2.38 -0.02 1.38 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.16 6.68 -2.39 -0.02 1.14 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 1.11 6.28 -2.39 -0.01 1.09 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.04 1.18 7.69 -2.39 -0.02 1.16 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.39 14.14 8.61 -92.71 -0.80 13.34 16 45 H 0.11 4.35 6.07 -2.91 -0.02 4.33 16 46 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 47 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 48 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 49 H 0.10 5.59 6.24 -2.91 -0.02 5.57 16 Total: -1.00 -61.55 376.67 5.45 -56.10 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: 0.11 Total: 43.71 kcal Atomic # 6 Polarization: -72.91 SS G_CDS: 4.54 Total: -68.37 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -1.24 Total: -73.80 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -61.55 5.45 -56.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308769993.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.405 kcal (2) G-P(sol) polarization free energy of solvation -61.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds