Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47096 * 2 1 4 4 N 1.46500 * 109.47306 * 184.98801 * 3 2 1 5 5 C 1.46496 * 119.99638 * 95.12397 * 4 3 2 6 6 C 1.53000 * 109.47000 * 83.85474 * 5 4 3 7 7 H 1.08997 * 109.47457 * 305.50113 * 6 5 4 8 8 C 1.53009 * 109.46982 * 65.50023 * 6 5 4 9 9 C 1.53006 * 109.46946 * 185.49489 * 6 5 4 10 10 C 1.50700 * 109.46982 * 174.99993 * 9 6 5 11 11 H 1.08005 * 119.99932 * 0.02562 * 10 9 6 12 12 C 1.37878 * 120.00163 * 180.02562 * 10 9 6 13 13 N 1.31515 * 119.99898 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00190 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47086 * 90.00075 * 14 12 10 16 16 H 1.48498 * 109.47276 * 210.00519 * 14 12 10 17 17 H 1.48505 * 109.47258 * 330.00402 * 14 12 10 18 18 C 1.39668 * 120.00003 * 274.85466 * 4 3 2 19 19 C 1.38912 * 120.07397 * 179.97438 * 18 4 3 20 20 C 1.38106 * 119.92539 * 179.76660 * 19 18 4 21 21 C 1.38284 * 120.07435 * 0.50263 * 20 19 18 22 22 C 1.50702 * 119.92732 * 179.72280 * 21 20 19 23 23 C 1.52999 * 109.47262 * 270.02756 * 22 21 20 24 24 C 1.38291 * 120.14861 * 359.74734 * 21 20 19 25 25 C 1.38099 * 120.07219 * 0.02562 * 24 21 20 26 26 H 1.08999 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46871 * 299.99842 * 1 2 3 28 28 H 1.08999 * 109.47113 * 59.99444 * 1 2 3 29 29 H 1.09004 * 109.47064 * 240.00905 * 2 1 3 30 30 H 1.08989 * 109.47541 * 120.00242 * 2 1 3 31 31 H 1.09002 * 109.46955 * 64.99136 * 3 2 1 32 32 H 1.08997 * 109.47480 * 304.99252 * 3 2 1 33 33 H 1.09004 * 109.47020 * 203.85607 * 5 4 3 34 34 H 1.09001 * 109.47681 * 323.85221 * 5 4 3 35 35 H 1.08992 * 109.46849 * 295.07405 * 8 6 5 36 36 H 1.08994 * 109.47008 * 55.07506 * 8 6 5 37 37 H 1.09001 * 109.46828 * 175.07578 * 8 6 5 38 38 H 1.08993 * 109.47570 * 295.00394 * 9 6 5 39 39 H 1.09003 * 109.46957 * 55.00718 * 9 6 5 40 40 H 0.96992 * 120.00034 * 179.97438 * 13 12 10 41 41 H 1.07996 * 120.03601 * 359.97438 * 19 18 4 42 42 H 1.08006 * 119.96338 * 180.25147 * 20 19 18 43 43 H 1.09001 * 109.46802 * 30.02289 * 22 21 20 44 44 H 1.09001 * 109.46974 * 150.02300 * 22 21 20 45 45 H 1.09008 * 109.46556 * 299.99792 * 23 22 21 46 46 H 1.09000 * 109.47366 * 59.99326 * 23 22 21 47 47 H 1.08992 * 109.47235 * 180.02562 * 23 22 21 48 48 H 1.07999 * 119.96025 * 180.02562 * 24 21 20 49 49 H 1.08009 * 120.03491 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5001 1.4444 -0.1201 5 6 4.1266 1.5952 -1.4357 6 6 4.2172 3.0808 -1.7901 7 1 3.2280 3.5326 -1.7178 8 6 5.1696 3.7799 -0.8178 9 6 4.7444 3.2331 -3.2184 10 6 4.7180 4.6878 -3.6111 11 1 4.3613 5.4295 -2.9118 12 6 5.1492 5.0718 -4.8632 13 7 5.5830 4.1685 -5.7149 14 14 5.1171 6.8750 -5.3497 15 1 6.4086 7.5097 -4.9829 16 1 4.9084 6.9886 -6.8156 17 1 4.0088 7.5603 -4.6374 18 6 4.2948 1.3080 1.0203 19 6 5.6794 1.3089 0.9082 20 6 6.4622 1.1787 2.0384 21 6 5.8692 1.0370 3.2796 22 6 6.7267 0.8889 4.5101 23 6 7.0098 -0.5939 4.7589 24 6 4.4911 1.0304 3.3943 25 6 3.7024 1.1649 2.2686 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 1.7515 1.9299 0.9313 32 1 1.6056 1.9816 -0.8418 33 1 5.1280 1.1653 -1.4127 34 1 3.5268 1.0788 -2.1852 35 1 4.7505 3.7472 0.1878 36 1 6.1342 3.2725 -0.8261 37 1 5.3024 4.8179 -1.1225 38 1 5.7677 2.8614 -3.2696 39 1 4.1155 2.6611 -3.9007 40 1 5.8860 4.4386 -6.5959 41 1 6.1431 1.4148 -0.0614 42 1 7.5389 1.1835 1.9524 43 1 7.6678 1.4188 4.3629 44 1 6.2040 1.3083 5.3697 45 1 6.0686 -1.1238 4.9059 46 1 7.5324 -1.0134 3.8992 47 1 7.6296 -0.7011 5.6490 48 1 4.0312 0.9200 4.3652 49 1 2.6261 1.1593 2.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308771433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = -5.805660 kcal Electronic energy + Delta-G solvation = -23384.092687 eV Core-core repulsion = 20309.662641 eV Total energy + Delta-G solvation = -3074.430045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.74189 -37.36585 -35.05632 -33.90452 -32.67251 -31.60184 -30.64376 -28.50925 -27.23109 -26.46329 -25.03152 -23.39623 -22.68773 -21.93142 -21.34450 -20.04628 -18.82291 -17.38747 -16.30910 -15.76287 -15.13216 -14.91606 -14.67207 -14.28804 -14.21913 -14.09725 -13.54501 -13.41326 -13.14656 -13.03646 -12.95619 -12.50228 -12.33758 -12.03917 -11.84259 -11.78442 -11.54241 -11.38491 -11.28738 -11.10164 -10.88598 -10.80227 -10.76087 -10.66954 -10.57195 -10.46000 -10.28580 -9.66638 -9.45875 -9.19041 -8.95011 -8.65477 -8.35137 -6.86021 -5.99709 -4.01057 1.70084 1.84565 3.31594 3.37996 3.40150 3.43554 4.10070 4.46370 4.89161 4.94760 4.95361 5.01463 5.14985 5.22232 5.29298 5.35946 5.38719 5.42419 5.52770 5.60806 5.65505 5.67996 5.71759 5.75698 5.84615 5.90911 5.95135 5.98231 6.00011 6.09146 6.11458 6.17019 6.25394 6.28424 6.30741 6.46043 6.60148 6.61893 6.68313 6.92855 6.97657 7.10946 7.14059 7.17928 7.63458 7.66529 7.77747 7.88455 7.99567 8.43819 9.04864 9.62525 11.11508 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.003911 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.041073 B = 7158.060866 C = 8556.692155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.124 3.876 4 N -0.620 5.620 5 C 0.123 3.877 6 C -0.101 4.101 7 H 0.055 0.945 8 C -0.128 4.128 9 C 0.029 3.971 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.228 3.772 19 C -0.191 4.191 20 C -0.070 4.070 21 C -0.155 4.155 22 C -0.074 4.074 23 C -0.145 4.145 24 C -0.073 4.073 25 C -0.205 4.205 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.112 0.888 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -9.637 17.736 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.000 4.000 4 N -0.328 5.328 5 C 0.001 3.999 6 C -0.120 4.120 7 H 0.074 0.926 8 C -0.185 4.185 9 C -0.008 4.008 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.125 3.875 19 C -0.213 4.213 20 C -0.089 4.089 21 C -0.157 4.157 22 C -0.111 4.111 23 C -0.203 4.203 24 C -0.091 4.091 25 C -0.227 4.227 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.130 0.870 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.836 -9.637 17.371 20.232 hybrid contribution -0.020 1.044 -0.511 1.163 sum -3.856 -8.593 16.860 19.312 Atomic orbital electron populations 1.21706 0.95570 1.01593 1.01856 1.21986 0.95626 0.98083 1.02519 1.21405 0.80235 0.95969 1.02366 1.46769 1.03932 1.77373 1.04712 1.21775 0.97929 0.98052 0.82136 1.21623 0.99205 0.92654 0.98560 0.92607 1.21734 0.98296 1.01361 0.97084 1.19086 0.96122 0.96967 0.88644 1.21211 1.42146 0.92965 0.98789 0.92666 1.25008 0.95519 0.97243 0.96692 1.69957 1.43683 1.32988 1.06963 0.86642 0.78388 0.85669 0.77596 1.20701 1.21287 1.19941 1.17831 0.90461 0.92543 0.86669 1.20855 0.91935 1.09109 0.99406 1.20720 0.98961 0.97556 0.91638 1.19506 0.93721 1.07863 0.94650 1.20358 0.98761 0.96647 0.95347 1.21761 1.01310 0.96175 1.01038 1.20630 0.92935 0.98228 0.97344 1.20592 0.99363 1.11408 0.91360 0.92785 0.92821 0.92508 0.91752 0.91909 0.91452 0.90471 0.90940 0.91564 0.94782 0.93875 0.92290 0.96552 0.96760 0.93069 0.85554 0.86760 0.91732 0.91894 0.92865 0.92715 0.93074 0.87040 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.14 -1.58 6.17 -26.73 -0.16 -1.74 16 3 C 0.12 1.56 5.07 -4.04 -0.02 1.54 16 4 N -0.62 -9.18 2.40 -171.75 -0.41 -9.59 16 5 C 0.12 2.07 4.86 -4.04 -0.02 2.05 16 6 C -0.10 -2.02 2.53 -90.61 -0.23 -2.24 16 7 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 8 C -0.13 -2.48 7.67 37.16 0.28 -2.19 16 9 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 10 C -0.51 -14.22 8.34 -34.44 -0.29 -14.51 16 11 H 0.06 1.51 7.08 -52.48 -0.37 1.14 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.23 3.38 5.51 -83.79 -0.46 2.91 16 19 C -0.19 -2.85 7.74 -39.38 -0.30 -3.16 16 20 C -0.07 -0.94 9.69 -39.61 -0.38 -1.33 16 21 C -0.16 -1.93 5.14 -104.58 -0.54 -2.46 16 22 C -0.07 -0.73 6.06 -27.88 -0.17 -0.90 16 23 C -0.15 -1.29 9.89 37.16 0.37 -0.93 16 24 C -0.07 -0.90 9.69 -39.61 -0.38 -1.28 16 25 C -0.20 -2.73 8.88 -39.38 -0.35 -3.08 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.71 7.65 -51.94 -0.40 0.31 16 31 H 0.07 0.80 6.49 -51.93 -0.34 0.46 16 32 H 0.08 1.01 8.03 -51.93 -0.42 0.60 16 33 H 0.07 1.22 5.88 -51.93 -0.31 0.91 16 34 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 35 H 0.03 0.62 6.82 -51.93 -0.35 0.26 16 36 H 0.04 0.81 6.79 -51.93 -0.35 0.46 16 37 H 0.06 1.25 6.82 -51.93 -0.35 0.90 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.13 1.97 4.75 -52.49 -0.25 1.72 16 42 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 43 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 45 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 49 H 0.12 1.40 6.03 -52.48 -0.32 1.08 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -29.25 380.08 -10.41 -39.65 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.92 Total: -0.25 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -2.51 Total: -26.21 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.33 Total: -35.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.25 -10.41 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308771433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.848 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds