Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47096 * 2 1 4 4 N 1.46500 * 109.47306 * 184.98801 * 3 2 1 5 5 C 1.46496 * 119.99638 * 95.12397 * 4 3 2 6 6 C 1.53000 * 109.47000 * 83.85474 * 5 4 3 7 7 H 1.08997 * 109.47457 * 305.50113 * 6 5 4 8 8 C 1.53009 * 109.46982 * 65.50023 * 6 5 4 9 9 C 1.53006 * 109.46946 * 185.49489 * 6 5 4 10 10 C 1.50700 * 109.46982 * 174.99993 * 9 6 5 11 11 H 1.08005 * 119.99932 * 0.02562 * 10 9 6 12 12 C 1.37878 * 120.00163 * 180.02562 * 10 9 6 13 13 N 1.31515 * 119.99898 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00190 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47086 * 90.00075 * 14 12 10 16 16 H 1.48498 * 109.47276 * 210.00519 * 14 12 10 17 17 H 1.48505 * 109.47258 * 330.00402 * 14 12 10 18 18 C 1.39668 * 120.00003 * 274.85466 * 4 3 2 19 19 C 1.38912 * 120.07397 * 179.97438 * 18 4 3 20 20 C 1.38106 * 119.92539 * 179.76660 * 19 18 4 21 21 C 1.38284 * 120.07435 * 0.50263 * 20 19 18 22 22 C 1.50702 * 119.92732 * 179.72280 * 21 20 19 23 23 C 1.52999 * 109.47262 * 270.02756 * 22 21 20 24 24 C 1.38291 * 120.14861 * 359.74734 * 21 20 19 25 25 C 1.38099 * 120.07219 * 0.02562 * 24 21 20 26 26 H 1.08999 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46871 * 299.99842 * 1 2 3 28 28 H 1.08999 * 109.47113 * 59.99444 * 1 2 3 29 29 H 1.09004 * 109.47064 * 240.00905 * 2 1 3 30 30 H 1.08989 * 109.47541 * 120.00242 * 2 1 3 31 31 H 1.09002 * 109.46955 * 64.99136 * 3 2 1 32 32 H 1.08997 * 109.47480 * 304.99252 * 3 2 1 33 33 H 1.09004 * 109.47020 * 203.85607 * 5 4 3 34 34 H 1.09001 * 109.47681 * 323.85221 * 5 4 3 35 35 H 1.08992 * 109.46849 * 295.07405 * 8 6 5 36 36 H 1.08994 * 109.47008 * 55.07506 * 8 6 5 37 37 H 1.09001 * 109.46828 * 175.07578 * 8 6 5 38 38 H 1.08993 * 109.47570 * 295.00394 * 9 6 5 39 39 H 1.09003 * 109.46957 * 55.00718 * 9 6 5 40 40 H 0.96992 * 120.00034 * 179.97438 * 13 12 10 41 41 H 1.07996 * 120.03601 * 359.97438 * 19 18 4 42 42 H 1.08006 * 119.96338 * 180.25147 * 20 19 18 43 43 H 1.09001 * 109.46802 * 30.02289 * 22 21 20 44 44 H 1.09001 * 109.46974 * 150.02300 * 22 21 20 45 45 H 1.09008 * 109.46556 * 299.99792 * 23 22 21 46 46 H 1.09000 * 109.47366 * 59.99326 * 23 22 21 47 47 H 1.08992 * 109.47235 * 180.02562 * 23 22 21 48 48 H 1.07999 * 119.96025 * 180.02562 * 24 21 20 49 49 H 1.08009 * 120.03491 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5001 1.4444 -0.1201 5 6 4.1266 1.5952 -1.4357 6 6 4.2172 3.0808 -1.7901 7 1 3.2280 3.5326 -1.7178 8 6 5.1696 3.7799 -0.8178 9 6 4.7444 3.2331 -3.2184 10 6 4.7180 4.6878 -3.6111 11 1 4.3613 5.4295 -2.9118 12 6 5.1492 5.0718 -4.8632 13 7 5.5830 4.1685 -5.7149 14 14 5.1171 6.8750 -5.3497 15 1 6.4086 7.5097 -4.9829 16 1 4.9084 6.9886 -6.8156 17 1 4.0088 7.5603 -4.6374 18 6 4.2948 1.3080 1.0203 19 6 5.6794 1.3089 0.9082 20 6 6.4622 1.1787 2.0384 21 6 5.8692 1.0370 3.2796 22 6 6.7267 0.8889 4.5101 23 6 7.0098 -0.5939 4.7589 24 6 4.4911 1.0304 3.3943 25 6 3.7024 1.1649 2.2686 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 1.7515 1.9299 0.9313 32 1 1.6056 1.9816 -0.8418 33 1 5.1280 1.1653 -1.4127 34 1 3.5268 1.0788 -2.1852 35 1 4.7505 3.7472 0.1878 36 1 6.1342 3.2725 -0.8261 37 1 5.3024 4.8179 -1.1225 38 1 5.7677 2.8614 -3.2696 39 1 4.1155 2.6611 -3.9007 40 1 5.8860 4.4386 -6.5959 41 1 6.1431 1.4148 -0.0614 42 1 7.5389 1.1835 1.9524 43 1 7.6678 1.4188 4.3629 44 1 6.2040 1.3083 5.3697 45 1 6.0686 -1.1238 4.9059 46 1 7.5324 -1.0134 3.8992 47 1 7.6296 -0.7011 5.6490 48 1 4.0312 0.9200 4.3652 49 1 2.6261 1.1593 2.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308771433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -17.310001 kcal Electronic energy + Delta-G solvation = -23384.591552 eV Core-core repulsion = 20309.662641 eV Total energy + Delta-G solvation = -3074.928911 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83842 -38.53282 -36.58498 -34.86772 -34.37756 -32.90347 -31.70873 -29.55967 -28.97604 -27.85099 -26.23353 -24.99468 -23.62355 -23.18556 -22.26700 -21.28654 -20.29261 -18.74948 -18.15738 -16.93788 -16.53877 -16.10067 -15.85030 -15.58804 -15.49816 -15.25538 -14.70578 -14.41091 -14.39561 -14.11291 -14.03951 -14.02554 -13.57550 -13.32362 -13.16012 -12.88795 -12.76399 -12.72142 -12.60111 -12.49884 -12.32665 -12.25441 -12.07281 -11.94773 -11.69101 -11.60701 -11.53002 -11.30624 -11.17971 -11.06615 -10.54496 -10.34302 -9.69747 -8.20090 -7.96879 -6.27438 0.65668 0.80835 1.38791 1.39258 1.50114 2.26567 2.41752 3.06394 3.14803 3.90327 3.93222 4.09301 4.10897 4.16348 4.25455 4.33858 4.36518 4.40884 4.44782 4.55829 4.62914 4.66672 4.68373 4.72903 4.80692 4.81882 4.89750 4.91556 5.01943 5.04029 5.15391 5.16816 5.18235 5.22256 5.26305 5.28882 5.35022 5.42585 5.43889 5.46428 5.51115 5.58445 5.67020 5.76931 5.86498 5.95311 6.14083 6.27169 6.48955 6.74779 6.87673 7.40607 8.93089 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.003911 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.041073 B = 7158.060866 C = 8556.692155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.122 3.878 4 N -0.624 5.624 5 C 0.137 3.863 6 C -0.088 4.088 7 H 0.050 0.950 8 C -0.113 4.113 9 C 0.037 3.963 10 C -0.529 4.529 11 H 0.056 0.944 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.210 3.790 19 C -0.209 4.209 20 C -0.080 4.080 21 C -0.154 4.154 22 C -0.073 4.073 23 C -0.143 4.143 24 C -0.075 4.075 25 C -0.205 4.205 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.038 0.962 38 H -0.008 1.008 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.067 0.933 48 H 0.138 0.862 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 -9.361 20.098 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.001 4.001 4 N -0.332 5.332 5 C 0.014 3.986 6 C -0.108 4.108 7 H 0.068 0.932 8 C -0.170 4.170 9 C -0.001 4.001 10 C -0.567 4.567 11 H 0.074 0.926 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.782 3.218 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.190 1.190 18 C 0.108 3.892 19 C -0.232 4.232 20 C -0.099 4.099 21 C -0.156 4.156 22 C -0.111 4.111 23 C -0.200 4.200 24 C -0.093 4.093 25 C -0.227 4.227 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.155 0.845 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.567 -9.367 19.766 22.345 hybrid contribution 0.242 0.915 -1.176 1.510 sum -4.325 -8.451 18.590 20.874 Atomic orbital electron populations 1.21679 0.93976 1.02357 1.02296 1.21886 0.96887 0.96699 1.01850 1.21538 0.78907 0.97072 1.02562 1.46676 1.04742 1.78025 1.03792 1.21400 0.98165 0.95454 0.83629 1.21419 0.98502 0.95221 0.95655 0.93196 1.21573 0.98271 0.99775 0.97403 1.18944 0.94396 0.95405 0.91353 1.21594 1.41840 0.94203 0.99046 0.92555 1.25893 0.95121 1.01906 0.96752 1.70084 1.44621 1.35234 1.07407 0.85560 0.78765 0.80084 0.77343 1.19984 1.20783 1.18955 1.17995 0.90428 0.93679 0.87135 1.20864 0.92466 1.10529 0.99320 1.20921 0.99531 0.97635 0.91813 1.19851 0.94316 1.06290 0.95109 1.20413 0.98625 0.97490 0.94536 1.21734 1.01543 0.95285 1.01459 1.20972 0.92945 0.97222 0.98179 1.20807 1.00282 1.10702 0.90908 0.91871 0.91651 0.92801 0.93136 0.91817 0.90234 0.91329 0.91248 0.91694 0.93403 0.93827 0.94337 0.98958 0.99045 0.92901 0.87143 0.85823 0.91370 0.90536 0.92865 0.93535 0.91431 0.84467 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.13 -2.82 6.17 30.60 0.19 -2.63 16 3 C 0.12 2.97 5.07 86.38 0.44 3.41 16 4 N -0.62 -18.33 2.40 -697.29 -1.67 -20.00 16 5 C 0.14 4.74 4.86 86.38 0.42 5.16 16 6 C -0.09 -3.62 2.53 -10.79 -0.03 -3.65 16 7 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 8 C -0.11 -4.46 7.67 71.99 0.55 -3.91 16 9 C 0.04 1.91 4.45 29.85 0.13 2.04 16 10 C -0.53 -29.96 8.34 25.60 0.21 -29.75 16 11 H 0.06 3.11 7.08 -2.91 -0.02 3.09 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 14 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 C 0.21 6.05 5.51 38.21 0.21 6.26 16 19 C -0.21 -6.26 7.74 22.40 0.17 -6.09 16 20 C -0.08 -2.10 9.69 22.25 0.22 -1.88 16 21 C -0.15 -3.49 5.14 -19.84 -0.10 -3.60 16 22 C -0.07 -1.26 6.06 29.85 0.18 -1.08 16 23 C -0.14 -2.19 9.89 71.98 0.71 -1.48 16 24 C -0.07 -1.65 9.69 22.25 0.22 -1.43 16 25 C -0.20 -5.04 8.88 22.40 0.20 -4.85 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 31 H 0.08 1.74 6.49 -2.39 -0.02 1.72 16 32 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 33 H 0.07 2.44 5.88 -2.38 -0.01 2.42 16 34 H 0.06 2.24 8.12 -2.39 -0.02 2.22 16 35 H 0.05 1.74 6.82 -2.39 -0.02 1.72 16 36 H 0.04 1.68 6.79 -2.39 -0.02 1.67 16 37 H 0.04 1.64 6.82 -2.39 -0.02 1.63 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.11 3.58 4.75 -2.91 -0.01 3.57 16 42 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 44 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 45 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 49 H 0.13 2.78 6.03 -2.91 -0.02 2.76 16 Total: -1.00 -63.09 380.08 6.42 -56.67 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.88 Total: 17.80 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.90 Total: -44.66 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.39 Total: -76.52 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.09 6.42 -56.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308771433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.358 kcal (2) G-P(sol) polarization free energy of solvation -63.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds