Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47067 * 2 1 4 4 N 1.46496 * 109.47224 * 179.97438 * 3 2 1 5 5 C 1.46505 * 119.99619 * 90.00069 * 4 3 2 6 6 C 1.52997 * 109.47212 * 89.99960 * 5 4 3 7 7 H 1.09008 * 109.47017 * 54.99771 * 6 5 4 8 8 C 1.53001 * 109.47242 * 295.00240 * 6 5 4 9 9 C 1.52994 * 109.47404 * 174.99693 * 6 5 4 10 10 C 1.50701 * 109.47248 * 184.99754 * 9 6 5 11 11 H 1.07997 * 120.00120 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99825 * 179.97438 * 10 9 6 13 13 N 1.31509 * 120.00260 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99910 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47203 * 90.00043 * 14 12 10 16 16 H 1.48495 * 109.47415 * 210.00145 * 14 12 10 17 17 H 1.48498 * 109.47390 * 330.00270 * 14 12 10 18 18 C 1.39670 * 120.00296 * 270.00203 * 4 3 2 19 19 C 1.38906 * 120.07395 * 179.72536 * 18 4 3 20 20 C 1.38108 * 119.92560 * 179.76650 * 19 18 4 21 21 C 1.38285 * 120.07114 * 0.50690 * 20 19 18 22 22 C 1.50701 * 119.92567 * 179.72168 * 21 20 19 23 23 C 1.53001 * 109.47360 * 270.02421 * 22 21 20 24 24 C 1.38288 * 120.14893 * 359.74477 * 21 20 19 25 25 C 1.38099 * 120.07558 * 359.97438 * 24 21 20 26 26 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47165 * 299.99637 * 1 2 3 28 28 H 1.08993 * 109.47140 * 59.99824 * 1 2 3 29 29 H 1.09002 * 109.47165 * 240.00363 * 2 1 3 30 30 H 1.08997 * 109.47215 * 119.99658 * 2 1 3 31 31 H 1.09006 * 109.46834 * 59.99650 * 3 2 1 32 32 H 1.09003 * 109.46788 * 300.00337 * 3 2 1 33 33 H 1.09002 * 109.47068 * 210.00020 * 5 4 3 34 34 H 1.09001 * 109.47372 * 330.00108 * 5 4 3 35 35 H 1.08998 * 109.47430 * 59.99652 * 8 6 5 36 36 H 1.08996 * 109.47271 * 180.02562 * 8 6 5 37 37 H 1.09008 * 109.46731 * 299.99706 * 8 6 5 38 38 H 1.09001 * 109.47698 * 305.00111 * 9 6 5 39 39 H 1.09009 * 109.47010 * 65.00116 * 9 6 5 40 40 H 0.97000 * 120.00592 * 179.97438 * 13 12 10 41 41 H 1.08005 * 120.04147 * 0.02562 * 19 18 4 42 42 H 1.08003 * 119.96388 * 180.24985 * 20 19 18 43 43 H 1.08999 * 109.46995 * 30.01974 * 22 21 20 44 44 H 1.08997 * 109.47525 * 150.02369 * 22 21 20 45 45 H 1.09003 * 109.46833 * 300.00211 * 23 22 21 46 46 H 1.09003 * 109.47075 * 59.99902 * 23 22 21 47 47 H 1.08994 * 109.47489 * 179.97438 * 23 22 21 48 48 H 1.08002 * 119.95688 * 180.02562 * 24 21 20 49 49 H 1.08004 * 120.03581 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2379 1.4425 -1.2679 6 6 4.4930 2.8849 -1.7097 7 1 5.0045 3.4241 -0.9122 8 6 3.1585 3.5689 -2.0134 9 6 5.3648 2.8866 -2.9670 10 6 5.7179 4.3056 -3.3315 11 1 5.3569 5.1243 -2.7267 12 6 6.5026 4.5586 -4.4367 13 7 6.9425 3.5616 -5.1729 14 14 6.9408 6.3174 -4.8881 15 1 8.2053 6.7018 -4.2111 16 1 7.1153 6.4221 -6.3591 17 1 5.8503 7.2266 -4.4531 18 6 4.2028 1.4428 1.2105 19 6 5.5919 1.4370 1.2128 20 6 6.2789 1.4421 2.4108 21 6 5.5855 1.4422 3.6072 22 6 6.3384 1.4414 4.9126 23 6 6.5929 -0.0013 5.3538 24 6 4.2026 1.4427 3.6085 25 6 3.5094 1.4435 2.4141 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.1903 0.9287 -1.1371 34 1 3.6491 0.9285 -2.0277 35 1 2.5375 3.5677 -1.1176 36 1 3.3403 4.5963 -2.3285 37 1 2.6471 3.0297 -2.8108 38 1 6.2778 2.3224 -2.7769 39 1 4.8174 2.4257 -3.7893 40 1 7.4943 3.7395 -5.9506 41 1 6.1341 1.4329 0.2787 42 1 7.3589 1.4417 2.4133 43 1 7.2911 1.9550 4.7829 44 1 5.7493 1.9551 5.6723 45 1 5.6402 -0.5149 5.4835 46 1 7.1821 -0.5150 4.5941 47 1 7.1379 -0.0020 6.2977 48 1 3.6641 1.4432 4.5447 49 1 2.4294 1.4434 2.4158 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308771434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -5.845837 kcal Electronic energy + Delta-G solvation = -23335.383865 eV Core-core repulsion = 20260.952077 eV Total energy + Delta-G solvation = -3074.431788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.68314 -37.44132 -34.96082 -33.94145 -32.65744 -31.58996 -30.67015 -28.43111 -27.19171 -26.80823 -24.85213 -23.41155 -22.62054 -21.94965 -21.30702 -19.92462 -19.09863 -17.14570 -16.41807 -15.78934 -15.12845 -14.87652 -14.70610 -14.32908 -14.20631 -14.07453 -13.61329 -13.37584 -13.20404 -13.01324 -12.73275 -12.55084 -12.25382 -12.00859 -11.92136 -11.83495 -11.64751 -11.36481 -11.31819 -11.09181 -10.92446 -10.79586 -10.77307 -10.65561 -10.55457 -10.40610 -10.24078 -9.73744 -9.51993 -9.12920 -8.93103 -8.64540 -8.34520 -6.85841 -5.99074 -4.00418 1.71910 1.86073 3.32209 3.38571 3.40752 3.44193 4.11839 4.47026 4.88092 4.96604 4.96980 5.00837 5.16387 5.23141 5.29922 5.36597 5.39440 5.42606 5.54164 5.59936 5.66015 5.69179 5.72532 5.76071 5.86671 5.89947 5.93225 5.99401 6.00202 6.05501 6.11075 6.18951 6.22443 6.27482 6.31967 6.42811 6.52175 6.61322 6.70928 6.95296 6.97779 7.05721 7.11790 7.18501 7.64169 7.66627 7.80017 7.87806 8.00202 8.44474 9.05469 9.63210 11.12105 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.004181 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.601727 B = 6695.868407 C = 8379.000165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.119 3.881 4 N -0.620 5.620 5 C 0.125 3.875 6 C -0.102 4.102 7 H 0.059 0.941 8 C -0.131 4.131 9 C 0.030 3.970 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.225 3.775 19 C -0.191 4.191 20 C -0.068 4.068 21 C -0.155 4.155 22 C -0.074 4.074 23 C -0.145 4.145 24 C -0.073 4.073 25 C -0.204 4.204 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.112 0.888 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 -7.681 16.688 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.005 4.005 4 N -0.328 5.328 5 C 0.003 3.997 6 C -0.122 4.122 7 H 0.078 0.922 8 C -0.188 4.188 9 C -0.008 4.008 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.122 3.878 19 C -0.214 4.214 20 C -0.087 4.087 21 C -0.157 4.157 22 C -0.111 4.111 23 C -0.203 4.203 24 C -0.092 4.092 25 C -0.227 4.227 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.144 0.856 42 H 0.133 0.867 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.130 0.870 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.208 -7.720 16.334 19.843 hybrid contribution 0.308 0.980 -0.485 1.136 sum -7.900 -6.740 15.849 18.948 Atomic orbital electron populations 1.21700 0.95606 1.01601 1.01785 1.21996 0.95585 0.98216 1.02495 1.21581 0.80209 0.95928 1.02765 1.46748 1.04233 1.78525 1.03248 1.21732 0.96103 0.98456 0.83434 1.21625 0.96961 0.93330 1.00244 0.92212 1.21769 0.96650 1.01630 0.98791 1.19085 0.93816 0.97174 0.90711 1.21209 1.30808 0.92626 1.10449 0.92684 1.25003 0.96120 0.96819 0.96487 1.69955 1.35762 1.30644 1.17240 0.86643 0.78838 0.85334 0.77495 1.20704 1.21294 1.19942 1.17854 0.91236 0.92841 0.85841 1.20820 0.92430 1.09279 0.98832 1.20738 0.99087 0.97386 0.91465 1.19516 0.93593 1.08033 0.94565 1.20359 0.99528 0.96953 0.94291 1.21761 1.01437 0.96548 1.00535 1.20631 0.93421 0.98268 0.96836 1.20584 0.99194 1.11664 0.91215 0.92773 0.92831 0.92577 0.91812 0.91930 0.91287 0.90119 0.91133 0.91471 0.94708 0.92193 0.93960 0.96721 0.96616 0.93075 0.85577 0.86664 0.91691 0.91886 0.92871 0.92706 0.93068 0.87018 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.14 -1.57 6.26 -26.73 -0.17 -1.74 16 3 C 0.12 1.48 4.23 -4.04 -0.02 1.46 16 4 N -0.62 -9.21 2.43 -171.75 -0.42 -9.62 16 5 C 0.12 2.10 4.66 -4.04 -0.02 2.08 16 6 C -0.10 -2.04 2.54 -90.62 -0.23 -2.27 16 7 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 8 C -0.13 -2.45 7.99 37.16 0.30 -2.15 16 9 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 10 C -0.51 -14.25 8.41 -34.44 -0.29 -14.53 16 11 H 0.05 1.51 7.06 -52.49 -0.37 1.14 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.23 3.43 6.55 -83.79 -0.55 2.88 16 19 C -0.19 -3.00 9.21 -39.38 -0.36 -3.36 16 20 C -0.07 -0.96 9.69 -39.61 -0.38 -1.34 16 21 C -0.15 -1.98 5.14 -104.59 -0.54 -2.52 16 22 C -0.07 -0.76 6.06 -27.88 -0.17 -0.93 16 23 C -0.15 -1.33 9.89 37.16 0.37 -0.97 16 24 C -0.07 -0.92 9.69 -39.61 -0.38 -1.31 16 25 C -0.20 -2.77 9.21 -39.38 -0.36 -3.13 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.81 6.19 -51.93 -0.32 0.48 16 32 H 0.08 1.03 5.98 -51.93 -0.31 0.72 16 33 H 0.07 1.21 6.19 -51.93 -0.32 0.89 16 34 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.03 0.57 5.89 -51.93 -0.31 0.26 16 36 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 37 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 2.09 6.14 -52.48 -0.32 1.76 16 42 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 44 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.12 1.40 6.14 -52.48 -0.32 1.08 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -29.35 382.83 -10.54 -39.89 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.95 Total: -0.06 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -2.66 Total: -26.66 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.32 Total: -35.61 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.35 -10.54 -39.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308771434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.042 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds