Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47067 * 2 1 4 4 N 1.46496 * 109.47224 * 179.97438 * 3 2 1 5 5 C 1.46505 * 119.99619 * 90.00069 * 4 3 2 6 6 C 1.52997 * 109.47212 * 89.99960 * 5 4 3 7 7 H 1.09008 * 109.47017 * 54.99771 * 6 5 4 8 8 C 1.53001 * 109.47242 * 295.00240 * 6 5 4 9 9 C 1.52994 * 109.47404 * 174.99693 * 6 5 4 10 10 C 1.50701 * 109.47248 * 184.99754 * 9 6 5 11 11 H 1.07997 * 120.00120 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99825 * 179.97438 * 10 9 6 13 13 N 1.31509 * 120.00260 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99910 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47203 * 90.00043 * 14 12 10 16 16 H 1.48495 * 109.47415 * 210.00145 * 14 12 10 17 17 H 1.48498 * 109.47390 * 330.00270 * 14 12 10 18 18 C 1.39670 * 120.00296 * 270.00203 * 4 3 2 19 19 C 1.38906 * 120.07395 * 179.72536 * 18 4 3 20 20 C 1.38108 * 119.92560 * 179.76650 * 19 18 4 21 21 C 1.38285 * 120.07114 * 0.50690 * 20 19 18 22 22 C 1.50701 * 119.92567 * 179.72168 * 21 20 19 23 23 C 1.53001 * 109.47360 * 270.02421 * 22 21 20 24 24 C 1.38288 * 120.14893 * 359.74477 * 21 20 19 25 25 C 1.38099 * 120.07558 * 359.97438 * 24 21 20 26 26 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47165 * 299.99637 * 1 2 3 28 28 H 1.08993 * 109.47140 * 59.99824 * 1 2 3 29 29 H 1.09002 * 109.47165 * 240.00363 * 2 1 3 30 30 H 1.08997 * 109.47215 * 119.99658 * 2 1 3 31 31 H 1.09006 * 109.46834 * 59.99650 * 3 2 1 32 32 H 1.09003 * 109.46788 * 300.00337 * 3 2 1 33 33 H 1.09002 * 109.47068 * 210.00020 * 5 4 3 34 34 H 1.09001 * 109.47372 * 330.00108 * 5 4 3 35 35 H 1.08998 * 109.47430 * 59.99652 * 8 6 5 36 36 H 1.08996 * 109.47271 * 180.02562 * 8 6 5 37 37 H 1.09008 * 109.46731 * 299.99706 * 8 6 5 38 38 H 1.09001 * 109.47698 * 305.00111 * 9 6 5 39 39 H 1.09009 * 109.47010 * 65.00116 * 9 6 5 40 40 H 0.97000 * 120.00592 * 179.97438 * 13 12 10 41 41 H 1.08005 * 120.04147 * 0.02562 * 19 18 4 42 42 H 1.08003 * 119.96388 * 180.24985 * 20 19 18 43 43 H 1.08999 * 109.46995 * 30.01974 * 22 21 20 44 44 H 1.08997 * 109.47525 * 150.02369 * 22 21 20 45 45 H 1.09003 * 109.46833 * 300.00211 * 23 22 21 46 46 H 1.09003 * 109.47075 * 59.99902 * 23 22 21 47 47 H 1.08994 * 109.47489 * 179.97438 * 23 22 21 48 48 H 1.08002 * 119.95688 * 180.02562 * 24 21 20 49 49 H 1.08004 * 120.03581 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2379 1.4425 -1.2679 6 6 4.4930 2.8849 -1.7097 7 1 5.0045 3.4241 -0.9122 8 6 3.1585 3.5689 -2.0134 9 6 5.3648 2.8866 -2.9670 10 6 5.7179 4.3056 -3.3315 11 1 5.3569 5.1243 -2.7267 12 6 6.5026 4.5586 -4.4367 13 7 6.9425 3.5616 -5.1729 14 14 6.9408 6.3174 -4.8881 15 1 8.2053 6.7018 -4.2111 16 1 7.1153 6.4221 -6.3591 17 1 5.8503 7.2266 -4.4531 18 6 4.2028 1.4428 1.2105 19 6 5.5919 1.4370 1.2128 20 6 6.2789 1.4421 2.4108 21 6 5.5855 1.4422 3.6072 22 6 6.3384 1.4414 4.9126 23 6 6.5929 -0.0013 5.3538 24 6 4.2026 1.4427 3.6085 25 6 3.5094 1.4435 2.4141 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.1903 0.9287 -1.1371 34 1 3.6491 0.9285 -2.0277 35 1 2.5375 3.5677 -1.1176 36 1 3.3403 4.5963 -2.3285 37 1 2.6471 3.0297 -2.8108 38 1 6.2778 2.3224 -2.7769 39 1 4.8174 2.4257 -3.7893 40 1 7.4943 3.7395 -5.9506 41 1 6.1341 1.4329 0.2787 42 1 7.3589 1.4417 2.4133 43 1 7.2911 1.9550 4.7829 44 1 5.7493 1.9551 5.6723 45 1 5.6402 -0.5149 5.4835 46 1 7.1821 -0.5150 4.5941 47 1 7.1379 -0.0020 6.2977 48 1 3.6641 1.4432 4.5447 49 1 2.4294 1.4434 2.4158 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308771434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = -17.502500 kcal Electronic energy + Delta-G solvation = -23335.889336 eV Core-core repulsion = 20260.952077 eV Total energy + Delta-G solvation = -3074.937258 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80087 -38.63374 -36.50979 -34.84794 -34.41501 -32.90123 -31.75008 -29.61891 -28.68263 -28.32265 -25.99779 -25.04933 -23.62765 -23.16667 -22.22596 -21.18216 -20.59892 -18.55846 -18.20700 -17.04620 -16.53291 -16.16186 -15.79442 -15.61243 -15.54758 -15.18114 -14.79738 -14.40919 -14.34925 -14.11977 -14.01185 -13.97072 -13.58448 -13.34746 -13.10993 -12.92078 -12.87719 -12.72636 -12.66542 -12.50590 -12.37049 -12.13137 -12.04705 -11.91449 -11.68666 -11.56292 -11.55414 -11.44088 -11.17249 -11.03803 -10.55038 -10.32940 -9.73299 -8.20627 -7.98571 -6.27918 0.62935 0.78492 1.38247 1.38853 1.49718 2.26347 2.41415 3.04016 3.14374 3.92053 3.93998 4.08630 4.10372 4.15505 4.22812 4.30384 4.35338 4.43134 4.46530 4.56500 4.61092 4.64037 4.66162 4.75482 4.79741 4.81257 4.87549 4.89453 5.02086 5.04678 5.15513 5.16581 5.17998 5.22022 5.24845 5.29328 5.33048 5.43421 5.44484 5.45863 5.50856 5.56171 5.65314 5.77337 5.86432 5.93032 6.11988 6.27014 6.48872 6.73106 6.87062 7.40179 8.92706 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.004181 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.601727 B = 6695.868407 C = 8379.000165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.622 5.622 5 C 0.139 3.861 6 C -0.089 4.089 7 H 0.041 0.959 8 C -0.122 4.122 9 C 0.037 3.963 10 C -0.529 4.529 11 H 0.055 0.945 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.957 3.043 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.265 1.265 18 C 0.207 3.793 19 C -0.216 4.216 20 C -0.080 4.080 21 C -0.154 4.154 22 C -0.073 4.073 23 C -0.143 4.143 24 C -0.073 4.073 25 C -0.202 4.202 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.047 0.953 38 H -0.013 1.013 39 H -0.005 1.005 40 H 0.262 0.738 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.067 0.933 48 H 0.141 0.859 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 -7.113 18.871 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.331 5.331 5 C 0.016 3.984 6 C -0.109 4.109 7 H 0.060 0.940 8 C -0.179 4.179 9 C -0.001 4.001 10 C -0.567 4.567 11 H 0.073 0.927 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.782 3.218 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.189 1.189 18 C 0.105 3.895 19 C -0.239 4.239 20 C -0.099 4.099 21 C -0.156 4.156 22 C -0.111 4.111 23 C -0.200 4.200 24 C -0.092 4.092 25 C -0.224 4.224 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.005 0.995 39 H 0.013 0.987 40 H 0.071 0.929 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.159 0.841 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.758 -7.154 18.543 22.142 hybrid contribution 0.822 0.767 -1.094 1.568 sum -8.936 -6.387 17.450 20.619 Atomic orbital electron populations 1.21673 0.93798 1.02353 1.02429 1.21905 0.97024 0.96879 1.01714 1.21740 0.78538 0.97100 1.03248 1.46673 1.05097 1.79062 1.02239 1.21352 0.96269 0.95943 0.84881 1.21398 0.96673 0.95679 0.97113 0.94006 1.21668 0.96029 1.00014 1.00168 1.18945 0.93286 0.95473 0.92368 1.21586 1.30795 0.93757 1.10569 0.92662 1.25889 0.96026 1.01242 0.96463 1.70082 1.36505 1.32952 1.17791 0.85561 0.78802 0.80073 0.77331 1.20057 1.20690 1.18919 1.18030 0.91120 0.93814 0.86544 1.20820 0.93168 1.11238 0.98659 1.20913 0.99638 0.97694 0.91644 1.19861 0.94133 1.06475 0.95098 1.20417 0.99545 0.97902 0.93208 1.21734 1.01617 0.95599 1.01049 1.21006 0.93469 0.97009 0.97698 1.20823 1.00143 1.10756 0.90710 0.92011 0.91679 0.92435 0.93044 0.92290 0.89926 0.90351 0.92244 0.90882 0.91975 0.94269 0.93438 0.99512 0.98655 0.92892 0.87831 0.86070 0.91514 0.90327 0.92715 0.93668 0.91353 0.84142 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.14 -2.76 6.26 30.60 0.19 -2.57 16 3 C 0.12 2.70 4.23 86.38 0.37 3.06 16 4 N -0.62 -18.33 2.43 -697.28 -1.70 -20.03 16 5 C 0.14 4.84 4.66 86.38 0.40 5.24 16 6 C -0.09 -3.68 2.54 -10.80 -0.03 -3.71 16 7 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 8 C -0.12 -4.52 7.99 71.98 0.58 -3.95 16 9 C 0.04 1.94 4.45 29.85 0.13 2.07 16 10 C -0.53 -30.23 8.41 25.60 0.22 -30.01 16 11 H 0.06 3.09 7.06 -2.91 -0.02 3.07 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 14 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 18 C 0.21 6.24 6.55 38.21 0.25 6.49 16 19 C -0.22 -7.04 9.21 22.40 0.21 -6.83 16 20 C -0.08 -2.27 9.69 22.25 0.22 -2.05 16 21 C -0.15 -3.69 5.14 -19.84 -0.10 -3.79 16 22 C -0.07 -1.33 6.06 29.85 0.18 -1.15 16 23 C -0.14 -2.30 9.89 71.98 0.71 -1.58 16 24 C -0.07 -1.67 9.69 22.25 0.22 -1.45 16 25 C -0.20 -5.07 9.21 22.40 0.21 -4.87 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.70 6.19 -2.38 -0.01 1.69 16 32 H 0.08 1.86 5.98 -2.39 -0.01 1.84 16 33 H 0.06 2.19 6.19 -2.39 -0.01 2.17 16 34 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 35 H 0.06 1.96 5.89 -2.39 -0.01 1.94 16 36 H 0.04 1.60 6.95 -2.39 -0.02 1.58 16 37 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.10 3.74 6.14 -2.91 -0.02 3.72 16 42 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 44 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 49 H 0.13 2.83 6.14 -2.91 -0.02 2.81 16 Total: -1.00 -64.35 382.83 6.41 -57.94 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.88 Total: 17.98 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 4.92 Total: -46.08 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.41 Total: -76.80 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.35 6.41 -57.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308771434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.438 kcal (2) G-P(sol) polarization free energy of solvation -64.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds