Wall clock time and date at job start Tue Mar 31 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47145 * 2 1 4 4 C 1.53003 * 109.46622 * 119.99871 * 2 1 3 5 5 N 1.46896 * 109.47254 * 63.06300 * 4 2 1 6 6 C 1.46893 * 111.00568 * 72.36792 * 5 4 2 7 7 C 1.50695 * 109.47607 * 199.96867 * 6 5 4 8 8 C 1.38240 * 120.00170 * 263.57515 * 7 6 5 9 9 C 1.38236 * 119.99704 * 179.76431 * 8 7 6 10 10 C 1.38236 * 120.00076 * 0.50507 * 9 8 7 11 11 C 1.38234 * 120.00252 * 359.74926 * 10 9 8 12 12 C 1.38236 * 119.99747 * 83.84452 * 7 6 5 13 13 C 1.46913 * 110.99929 * 196.32519 * 5 4 2 14 14 C 1.52994 * 109.47227 * 66.04287 * 13 5 4 15 15 H 1.09004 * 109.47466 * 305.00509 * 14 13 5 16 16 C 1.53001 * 109.47362 * 64.99934 * 14 13 5 17 17 C 1.52996 * 109.47184 * 185.00046 * 14 13 5 18 18 C 1.50703 * 109.47094 * 174.99798 * 17 14 13 19 19 H 1.07998 * 120.00138 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99751 * 180.02562 * 18 17 14 21 21 N 1.31511 * 120.00107 * 359.72100 * 20 18 17 22 22 Si 1.86802 * 119.99766 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46648 * 269.72209 * 22 20 18 24 24 H 1.48496 * 109.47004 * 29.72365 * 22 20 18 25 25 H 1.48499 * 109.46716 * 149.72242 * 22 20 18 26 26 H 1.09000 * 109.46974 * 60.00621 * 1 2 3 27 27 H 1.09002 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47425 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47273 * 239.99335 * 2 1 3 30 30 H 1.09003 * 109.47136 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47180 * 299.99398 * 3 2 1 32 32 H 1.09003 * 109.47333 * 60.00013 * 3 2 1 33 33 H 1.08995 * 109.47518 * 303.05921 * 4 2 1 34 34 H 1.09002 * 109.47118 * 183.05639 * 4 2 1 35 35 H 1.09002 * 109.46865 * 319.97200 * 6 5 4 36 36 H 1.09004 * 109.47121 * 79.96721 * 6 5 4 37 37 H 1.07997 * 119.99669 * 359.97438 * 8 7 6 38 38 H 1.07996 * 119.99644 * 180.22447 * 9 8 7 39 39 H 1.07999 * 119.99526 * 179.72357 * 10 9 8 40 40 H 1.07993 * 119.99837 * 179.97438 * 11 10 9 41 41 H 1.07997 * 120.00114 * 0.02562 * 12 7 6 42 42 H 1.08993 * 109.46692 * 306.04342 * 13 5 4 43 43 H 1.09000 * 109.46892 * 186.04391 * 13 5 4 44 44 H 1.08999 * 109.47354 * 179.97438 * 16 14 13 45 45 H 1.09006 * 109.47151 * 300.00288 * 16 14 13 46 46 H 1.09006 * 109.47064 * 59.99689 * 16 14 13 47 47 H 1.09003 * 109.47049 * 54.99696 * 17 14 13 48 48 H 1.08997 * 109.47440 * 295.00310 * 17 14 13 49 49 H 0.97007 * 119.99982 * 0.28537 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6116 -2.1259 1.2129 6 6 2.3669 -2.8808 0.2042 7 6 1.6099 -4.1325 -0.1576 8 6 1.9236 -5.3314 0.4550 9 6 1.2258 -6.4787 0.1266 10 6 0.2214 -6.4291 -0.8219 11 6 -0.0888 -5.2313 -1.4383 12 6 0.6055 -4.0830 -1.1061 13 6 1.7350 -2.7484 2.5379 14 6 0.7471 -2.0915 3.5040 15 1 0.9101 -1.0138 3.5133 16 6 -0.6837 -2.3870 3.0497 17 6 0.9612 -2.6518 4.9115 18 6 0.0745 -1.9183 5.8845 19 1 -0.5770 -1.1314 5.5339 20 6 0.0949 -2.2517 7.2222 21 7 0.8841 -3.2135 7.6482 22 14 -1.0048 -1.3429 8.4281 23 1 -0.2783 -0.1671 8.9712 24 1 -2.2337 -0.8866 7.7304 25 1 -1.3766 -2.2527 9.5414 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6325 -0.2401 2.1384 34 1 3.1286 -0.6741 1.2772 35 1 2.4990 -2.2659 -0.6861 36 1 3.3430 -3.1503 0.6077 37 1 2.7115 -5.3710 1.1925 38 1 1.4684 -7.4146 0.6078 39 1 -0.3207 -7.3264 -1.0817 40 1 -0.8732 -5.1928 -2.1796 41 1 0.3636 -3.1473 -1.5881 42 1 2.7507 -2.6136 2.9094 43 1 1.5145 -3.8131 2.4610 44 1 -1.3874 -1.9194 3.7383 45 1 -0.8362 -1.9878 2.0469 46 1 -0.8467 -3.4647 3.0404 47 1 2.0041 -2.5205 5.2001 48 1 0.7124 -3.7130 4.9219 49 1 1.4550 -3.6857 7.0219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461888387.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:22 Heat of formation + Delta-G solvation = -5.942277 kcal Electronic energy + Delta-G solvation = -23882.692360 eV Core-core repulsion = 20808.256391 eV Total energy + Delta-G solvation = -3074.435969 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.54804 -38.05191 -35.39967 -34.08414 -32.28230 -30.92483 -30.83466 -27.05864 -26.70952 -26.37824 -26.09639 -23.56471 -22.54432 -22.03172 -20.94819 -19.88409 -18.86262 -16.85739 -16.64236 -15.77035 -15.30578 -15.17516 -14.73540 -14.55365 -14.04717 -13.70089 -13.67356 -13.36116 -13.20358 -13.17173 -12.66757 -12.32160 -12.31824 -12.13500 -11.89136 -11.66293 -11.48016 -11.28908 -11.08154 -11.00801 -10.92093 -10.79869 -10.72196 -10.52265 -10.39663 -10.14208 -10.05807 -9.60846 -9.36032 -8.84026 -8.69410 -8.41924 -8.25513 -8.00608 -6.28641 -3.96184 1.40383 1.47583 3.46500 3.50556 3.66042 3.75485 4.27844 4.59950 4.81424 4.88580 4.91018 5.03015 5.07602 5.15797 5.20318 5.33192 5.41830 5.47911 5.55342 5.62444 5.64581 5.68965 5.71980 5.79287 5.85348 5.99346 6.00997 6.04295 6.08288 6.10034 6.13301 6.18753 6.36168 6.40226 6.50911 6.52278 6.54408 6.56224 6.69428 6.71685 6.96015 7.05678 7.13136 7.18641 7.35965 7.39581 7.49317 7.66045 8.31852 8.55079 8.96918 9.75094 11.11773 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.004705 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.086185 B = 5949.726056 C = 7417.901600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.054 3.946 5 N -0.524 5.524 6 C 0.088 3.912 7 C -0.066 4.066 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.124 4.124 12 C -0.098 4.098 13 C 0.058 3.942 14 C -0.071 4.071 15 H 0.056 0.944 16 C -0.120 4.120 17 C 0.014 3.986 18 C -0.591 4.591 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 1.069 2.931 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.285 1.285 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.025 0.975 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.035 0.965 47 H 0.001 0.999 48 H 0.006 0.994 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 0.501 -20.238 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.074 4.074 5 N -0.247 5.247 6 C -0.039 4.039 7 C -0.067 4.067 8 C -0.131 4.131 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.142 4.142 12 C -0.117 4.117 13 C -0.069 4.069 14 C -0.090 4.090 15 H 0.075 0.925 16 C -0.177 4.177 17 C -0.023 4.023 18 C -0.629 4.629 19 H 0.068 0.932 20 C -0.191 4.191 21 N -0.554 5.554 22 Si 0.898 3.102 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.211 1.211 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.024 0.976 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.053 0.591 -18.766 18.804 hybrid contribution 1.328 -0.165 -1.267 1.843 sum 2.381 0.426 -20.033 20.178 Atomic orbital electron populations 1.21726 0.94497 1.02709 1.00534 1.21095 0.96915 0.95091 0.97703 1.21826 1.00558 0.96340 1.01794 1.22277 0.97139 0.88858 0.99131 1.61983 1.55093 1.01320 1.06327 1.21083 0.93855 0.92600 0.96369 1.19747 0.96781 0.94188 0.95972 1.21092 1.00157 0.92565 0.99304 1.21099 0.96508 0.98281 0.97958 1.21092 0.98018 0.97880 0.97357 1.21104 0.99828 0.92971 1.00287 1.20946 0.95284 0.97938 0.97504 1.22370 0.97956 0.99172 0.87375 1.21068 0.94120 0.98907 0.94916 0.92522 1.21556 0.96652 1.00083 0.99392 1.19249 0.96155 0.95941 0.90976 1.22048 1.25429 1.21146 0.94277 0.93238 1.25800 0.98558 0.96910 0.97808 1.70748 1.24180 1.21803 1.38674 0.83550 0.75540 0.75586 0.75574 1.21599 1.21508 1.21102 0.94028 0.91241 0.92926 0.91822 0.93121 0.92814 0.92493 0.89680 0.95355 0.90268 0.94290 0.86470 0.86343 0.86509 0.86438 0.86278 0.95723 0.91091 0.92911 0.93607 0.94536 0.98062 0.97620 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.06 37.16 0.34 -1.29 16 2 C -0.09 -1.00 2.93 -90.62 -0.27 -1.27 16 3 C -0.15 -1.48 9.19 37.15 0.34 -1.14 16 4 C 0.05 0.72 4.24 -3.82 -0.02 0.71 16 5 N -0.52 -7.54 3.20 -236.08 -0.75 -8.29 16 6 C 0.09 1.11 4.96 -4.98 -0.02 1.08 16 7 C -0.07 -0.86 5.02 -104.62 -0.53 -1.38 16 8 C -0.11 -1.47 8.45 -39.58 -0.33 -1.80 16 9 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 10 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 11 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 12 C -0.10 -1.18 9.73 -39.58 -0.38 -1.57 16 13 C 0.06 1.02 4.17 -3.82 -0.02 1.01 16 14 C -0.07 -1.48 2.28 -90.62 -0.21 -1.69 16 15 H 0.06 1.21 6.10 -51.93 -0.32 0.89 16 16 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 17 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 18 C -0.59 -16.90 8.41 -34.44 -0.29 -17.19 16 19 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 20 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 21 N -0.92 -28.57 13.65 55.43 0.76 -27.81 16 22 Si 1.07 25.84 29.90 -169.99 -5.08 20.75 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.91 7.35 -51.93 -0.38 0.53 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.68 6.48 -51.93 -0.34 0.34 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.32 5.86 -51.93 -0.30 1.01 16 34 H 0.03 0.37 8.05 -51.93 -0.42 -0.04 16 35 H 0.08 0.88 6.22 -51.93 -0.32 0.56 16 36 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 37 H 0.12 1.47 8.02 -52.49 -0.42 1.05 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.07 1.29 6.41 -51.93 -0.33 0.95 16 44 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 45 H 0.04 0.83 7.41 -51.93 -0.38 0.44 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.00 0.03 8.01 -51.93 -0.42 -0.38 16 48 H 0.01 0.15 8.00 -51.93 -0.42 -0.26 16 49 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -30.61 381.01 -10.72 -41.33 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.93 Total: -0.17 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: -2.45 Total: -31.55 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.00 Total: -36.10 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.61 -10.72 -41.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461888387.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.386 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds