Wall clock time and date at job start Tue Mar 31 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47145 * 2 1 4 4 C 1.53003 * 109.46622 * 119.99871 * 2 1 3 5 5 N 1.46896 * 109.47254 * 63.06300 * 4 2 1 6 6 C 1.46893 * 111.00568 * 72.36792 * 5 4 2 7 7 C 1.50695 * 109.47607 * 199.96867 * 6 5 4 8 8 C 1.38240 * 120.00170 * 263.57515 * 7 6 5 9 9 C 1.38236 * 119.99704 * 179.76431 * 8 7 6 10 10 C 1.38236 * 120.00076 * 0.50507 * 9 8 7 11 11 C 1.38234 * 120.00252 * 359.74926 * 10 9 8 12 12 C 1.38236 * 119.99747 * 83.84452 * 7 6 5 13 13 C 1.46913 * 110.99929 * 196.32519 * 5 4 2 14 14 C 1.52994 * 109.47227 * 66.04287 * 13 5 4 15 15 H 1.09004 * 109.47466 * 305.00509 * 14 13 5 16 16 C 1.53001 * 109.47362 * 64.99934 * 14 13 5 17 17 C 1.52996 * 109.47184 * 185.00046 * 14 13 5 18 18 C 1.50703 * 109.47094 * 174.99798 * 17 14 13 19 19 H 1.07998 * 120.00138 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99751 * 180.02562 * 18 17 14 21 21 N 1.31511 * 120.00107 * 359.72100 * 20 18 17 22 22 Si 1.86802 * 119.99766 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46648 * 269.72209 * 22 20 18 24 24 H 1.48496 * 109.47004 * 29.72365 * 22 20 18 25 25 H 1.48499 * 109.46716 * 149.72242 * 22 20 18 26 26 H 1.09000 * 109.46974 * 60.00621 * 1 2 3 27 27 H 1.09002 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47425 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47273 * 239.99335 * 2 1 3 30 30 H 1.09003 * 109.47136 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47180 * 299.99398 * 3 2 1 32 32 H 1.09003 * 109.47333 * 60.00013 * 3 2 1 33 33 H 1.08995 * 109.47518 * 303.05921 * 4 2 1 34 34 H 1.09002 * 109.47118 * 183.05639 * 4 2 1 35 35 H 1.09002 * 109.46865 * 319.97200 * 6 5 4 36 36 H 1.09004 * 109.47121 * 79.96721 * 6 5 4 37 37 H 1.07997 * 119.99669 * 359.97438 * 8 7 6 38 38 H 1.07996 * 119.99644 * 180.22447 * 9 8 7 39 39 H 1.07999 * 119.99526 * 179.72357 * 10 9 8 40 40 H 1.07993 * 119.99837 * 179.97438 * 11 10 9 41 41 H 1.07997 * 120.00114 * 0.02562 * 12 7 6 42 42 H 1.08993 * 109.46692 * 306.04342 * 13 5 4 43 43 H 1.09000 * 109.46892 * 186.04391 * 13 5 4 44 44 H 1.08999 * 109.47354 * 179.97438 * 16 14 13 45 45 H 1.09006 * 109.47151 * 300.00288 * 16 14 13 46 46 H 1.09006 * 109.47064 * 59.99689 * 16 14 13 47 47 H 1.09003 * 109.47049 * 54.99696 * 17 14 13 48 48 H 1.08997 * 109.47440 * 295.00310 * 17 14 13 49 49 H 0.97007 * 119.99982 * 0.28537 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6116 -2.1259 1.2129 6 6 2.3669 -2.8808 0.2042 7 6 1.6099 -4.1325 -0.1576 8 6 1.9236 -5.3314 0.4550 9 6 1.2258 -6.4787 0.1266 10 6 0.2214 -6.4291 -0.8219 11 6 -0.0888 -5.2313 -1.4383 12 6 0.6055 -4.0830 -1.1061 13 6 1.7350 -2.7484 2.5379 14 6 0.7471 -2.0915 3.5040 15 1 0.9101 -1.0138 3.5133 16 6 -0.6837 -2.3870 3.0497 17 6 0.9612 -2.6518 4.9115 18 6 0.0745 -1.9183 5.8845 19 1 -0.5770 -1.1314 5.5339 20 6 0.0949 -2.2517 7.2222 21 7 0.8841 -3.2135 7.6482 22 14 -1.0048 -1.3429 8.4281 23 1 -0.2783 -0.1671 8.9712 24 1 -2.2337 -0.8866 7.7304 25 1 -1.3766 -2.2527 9.5414 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6325 -0.2401 2.1384 34 1 3.1286 -0.6741 1.2772 35 1 2.4990 -2.2659 -0.6861 36 1 3.3430 -3.1503 0.6077 37 1 2.7115 -5.3710 1.1925 38 1 1.4684 -7.4146 0.6078 39 1 -0.3207 -7.3264 -1.0817 40 1 -0.8732 -5.1928 -2.1796 41 1 0.3636 -3.1473 -1.5881 42 1 2.7507 -2.6136 2.9094 43 1 1.5145 -3.8131 2.4610 44 1 -1.3874 -1.9194 3.7383 45 1 -0.8362 -1.9878 2.0469 46 1 -0.8467 -3.4647 3.0404 47 1 2.0041 -2.5205 5.2001 48 1 0.7124 -3.7130 4.9219 49 1 1.4550 -3.6857 7.0219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461888387.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:21 Heat of formation + Delta-G solvation = -19.790699 kcal Electronic energy + Delta-G solvation = -23883.292873 eV Core-core repulsion = 20808.256391 eV Total energy + Delta-G solvation = -3075.036482 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57877 -39.17587 -36.97432 -35.39288 -34.13238 -32.07797 -31.73295 -28.63685 -27.97395 -27.59091 -27.38784 -25.39510 -23.61118 -23.35038 -21.96233 -21.14384 -20.28903 -18.88308 -17.70583 -16.79212 -16.50106 -16.41764 -15.80181 -15.67606 -15.63173 -15.29887 -15.15946 -14.77894 -14.23975 -14.15272 -13.80055 -13.74411 -13.48944 -13.30313 -13.21749 -12.99261 -12.96682 -12.86794 -12.53904 -12.47995 -12.09173 -11.95500 -11.85823 -11.80579 -11.73129 -11.70471 -11.46908 -11.26160 -11.15888 -10.55747 -10.52302 -9.75949 -9.62427 -9.20827 -8.65819 -6.34449 0.47888 0.56033 1.50939 1.60549 1.77970 2.56641 2.75492 3.18239 3.18670 3.84734 3.86743 3.95542 4.06506 4.09831 4.19743 4.24560 4.30075 4.32550 4.39157 4.45829 4.51952 4.66397 4.66974 4.73602 4.79109 4.81021 4.84203 4.89439 4.93375 4.96960 5.06278 5.12045 5.16058 5.17962 5.20460 5.30193 5.31160 5.36513 5.47067 5.50914 5.60241 5.62341 5.65623 5.67135 5.74871 6.02958 6.14173 6.14730 6.21071 6.24386 6.61883 7.46442 8.74623 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.004705 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.086185 B = 5949.726056 C = 7417.901600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 C -0.145 4.145 4 C 0.053 3.947 5 N -0.520 5.520 6 C 0.092 3.908 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.134 4.134 10 C -0.130 4.130 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.073 3.927 14 C -0.062 4.062 15 H 0.054 0.946 16 C -0.106 4.106 17 C 0.018 3.982 18 C -0.601 4.601 19 H 0.051 0.949 20 C -0.042 4.042 21 N -0.942 5.942 22 Si 1.117 2.883 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.284 1.284 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.036 0.964 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.015 0.985 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.027 0.973 47 H -0.021 1.021 48 H -0.018 1.018 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 1.554 -22.259 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.075 4.075 5 N -0.243 5.243 6 C -0.035 4.035 7 C -0.081 4.081 8 C -0.151 4.151 9 C -0.152 4.152 10 C -0.148 4.148 11 C -0.145 4.145 12 C -0.123 4.123 13 C -0.055 4.055 14 C -0.080 4.080 15 H 0.072 0.928 16 C -0.163 4.163 17 C -0.019 4.019 18 C -0.639 4.639 19 H 0.069 0.931 20 C -0.239 4.239 21 N -0.580 5.580 22 Si 0.939 3.061 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.209 1.209 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.033 0.967 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.046 0.954 47 H -0.002 1.002 48 H 0.001 0.999 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.069 1.649 -20.820 20.886 hybrid contribution 1.660 -0.532 -0.696 1.877 sum 1.729 1.117 -21.517 21.615 Atomic orbital electron populations 1.21685 0.94810 1.01907 1.00731 1.21054 0.96519 0.95719 0.96730 1.21804 1.00965 0.95363 1.02121 1.22320 0.97361 0.88205 0.99581 1.61945 1.55832 1.01845 1.04702 1.21119 0.93384 0.92746 0.96249 1.19832 0.97538 0.94031 0.96683 1.21213 1.00701 0.93410 0.99807 1.21345 0.96840 0.98512 0.98466 1.21424 0.97645 0.98993 0.96744 1.21450 1.00040 0.92588 1.00429 1.21172 0.94961 0.98936 0.97255 1.22026 0.96225 0.98599 0.88614 1.20882 0.95685 0.98587 0.92882 0.92812 1.21413 0.95411 0.99338 1.00132 1.19172 0.94288 0.94554 0.93906 1.22419 1.25424 1.21049 0.95036 0.93084 1.27388 0.99144 0.96902 1.00428 1.70890 1.25438 1.23251 1.38401 0.82940 0.74626 0.74945 0.73633 1.19799 1.19383 1.20933 0.92156 0.92459 0.94416 0.90381 0.92512 0.91230 0.93429 0.91972 0.94967 0.88145 0.94550 0.87125 0.85281 0.84307 0.84015 0.84897 0.96699 0.91783 0.94778 0.91204 0.95395 1.00243 0.99922 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.06 71.98 0.65 -2.23 16 2 C -0.08 -1.65 2.93 -10.79 -0.03 -1.68 16 3 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 4 C 0.05 1.37 4.24 86.30 0.37 1.74 16 5 N -0.52 -14.56 3.20 -900.81 -2.88 -17.44 16 6 C 0.09 2.19 4.96 85.56 0.42 2.62 16 7 C -0.08 -1.99 5.02 -19.87 -0.10 -2.09 16 8 C -0.13 -3.46 8.45 22.27 0.19 -3.27 16 9 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 10 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 11 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 12 C -0.10 -2.31 9.73 22.27 0.22 -2.09 16 13 C 0.07 2.62 4.17 86.30 0.36 2.98 16 14 C -0.06 -2.62 2.28 -10.80 -0.02 -2.65 16 15 H 0.05 2.33 6.10 -2.39 -0.01 2.31 16 16 C -0.11 -4.28 8.89 71.98 0.64 -3.64 16 17 C 0.02 0.99 3.76 29.85 0.11 1.10 16 18 C -0.60 -35.08 8.41 25.60 0.22 -34.87 16 19 H 0.05 2.91 7.06 -2.91 -0.02 2.89 16 20 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 21 N -0.94 -60.11 13.65 21.45 0.29 -59.82 16 22 Si 1.12 51.71 29.90 68.60 2.05 53.76 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.37 7.35 -2.39 -0.02 1.36 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.39 6.48 -2.39 -0.02 1.38 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.91 5.86 -2.39 -0.01 1.90 16 34 H 0.03 0.81 8.05 -2.39 -0.02 0.79 16 35 H 0.10 1.97 6.22 -2.39 -0.01 1.95 16 36 H 0.04 0.89 7.90 -2.39 -0.02 0.87 16 37 H 0.11 2.90 8.02 -2.91 -0.02 2.88 16 38 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 43 H 0.06 2.38 6.41 -2.39 -0.02 2.37 16 44 H 0.03 1.48 6.95 -2.39 -0.02 1.46 16 45 H 0.07 2.47 7.41 -2.38 -0.02 2.45 16 46 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 47 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 48 H -0.02 -1.02 8.00 -2.39 -0.02 -1.04 16 49 H 0.25 16.43 7.22 -92.70 -0.67 15.76 16 Total: -1.00 -66.84 381.01 5.25 -61.59 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.98 Total: 17.68 kcal Atomic # 6 Polarization: -60.59 SS G_CDS: 4.81 Total: -55.77 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.59 Total: -77.26 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.76 kcal Total: -66.84 5.25 -61.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461888387.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.800 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds