Wall clock time and date at job start Tue Mar 31 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 C 1.53003 * 109.47241 * 120.00049 * 2 1 3 5 5 N 1.46890 * 109.47254 * 175.32188 * 4 2 1 6 6 C 1.46908 * 111.00277 * 275.05044 * 5 4 2 7 7 C 1.50695 * 109.46886 * 76.67465 * 6 5 4 8 8 C 1.38234 * 119.99797 * 254.60095 * 7 6 5 9 9 C 1.38240 * 120.00174 * 179.77045 * 8 7 6 10 10 C 1.38231 * 119.99472 * 0.48010 * 9 8 7 11 11 C 1.38232 * 120.00299 * 359.79655 * 10 9 8 12 12 C 1.38228 * 120.00397 * 74.87726 * 7 6 5 13 13 C 1.46904 * 110.99924 * 151.09837 * 5 4 2 14 14 C 1.52997 * 109.47016 * 287.46272 * 13 5 4 15 15 H 1.09008 * 109.46413 * 54.09073 * 14 13 5 16 16 C 1.52999 * 109.47690 * 294.09334 * 14 13 5 17 17 C 1.53002 * 109.47263 * 174.08823 * 14 13 5 18 18 C 1.50704 * 109.47188 * 185.00551 * 17 14 13 19 19 H 1.08002 * 119.99613 * 0.02562 * 18 17 14 20 20 C 1.37868 * 119.99835 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99988 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47077 * 90.00489 * 22 20 18 24 24 H 1.48507 * 109.47137 * 209.99958 * 22 20 18 25 25 H 1.48491 * 109.47215 * 330.00079 * 22 20 18 26 26 H 1.08994 * 109.46828 * 299.99807 * 1 2 3 27 27 H 1.09001 * 109.46882 * 59.99808 * 1 2 3 28 28 H 1.08997 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47393 * 239.99925 * 2 1 3 30 30 H 1.08993 * 109.46964 * 305.74301 * 3 2 1 31 31 H 1.09000 * 109.46877 * 65.74834 * 3 2 1 32 32 H 1.09000 * 109.46934 * 185.74244 * 3 2 1 33 33 H 1.09003 * 109.47047 * 55.31944 * 4 2 1 34 34 H 1.08997 * 109.47249 * 295.32652 * 4 2 1 35 35 H 1.08994 * 109.47084 * 196.67825 * 6 5 4 36 36 H 1.09005 * 109.46630 * 316.67448 * 6 5 4 37 37 H 1.08003 * 120.00342 * 359.97438 * 8 7 6 38 38 H 1.07999 * 120.00373 * 180.25308 * 9 8 7 39 39 H 1.08007 * 120.00262 * 179.76864 * 10 9 8 40 40 H 1.08008 * 120.00082 * 179.97438 * 11 10 9 41 41 H 1.07997 * 119.99828 * 359.97438 * 12 7 6 42 42 H 1.08996 * 109.47172 * 47.46919 * 13 5 4 43 43 H 1.09003 * 109.46883 * 167.46960 * 13 5 4 44 44 H 1.08996 * 109.47502 * 179.97438 * 16 14 13 45 45 H 1.08999 * 109.46527 * 299.99786 * 16 14 13 46 46 H 1.09003 * 109.47126 * 59.99715 * 16 14 13 47 47 H 1.08999 * 109.46773 * 305.00653 * 17 14 13 48 48 H 1.09000 * 109.46566 * 65.00471 * 17 14 13 49 49 H 0.97000 * 119.99877 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5046 -0.8199 1.1941 6 6 3.9244 -1.9954 0.4195 7 6 3.7621 -1.7118 -1.0515 8 6 2.7183 -2.2837 -1.7546 9 6 2.5665 -2.0198 -3.1031 10 6 3.4644 -1.1919 -3.7505 11 6 4.5115 -0.6245 -3.0487 12 6 4.6602 -0.8843 -1.6992 13 6 4.0817 -0.8459 2.5448 14 6 3.9770 0.5461 3.1710 15 1 2.9414 0.8842 3.1336 16 6 4.8609 1.5232 2.3933 17 6 4.4417 0.4864 4.6276 18 6 4.2235 1.8273 5.2799 19 1 3.7957 2.6406 4.7124 20 6 4.5699 2.0157 6.6009 21 7 4.3791 3.1858 7.1703 22 14 5.3091 0.6088 7.5825 23 1 6.7879 0.6356 7.4493 24 1 4.9384 0.7549 9.0131 25 1 4.7888 -0.6824 7.0657 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.5952 1.9851 -0.8341 31 1 1.7632 1.9257 0.9370 32 1 3.1252 1.4442 -0.1028 33 1 1.6099 -1.7219 1.2922 34 1 1.7468 -0.1614 2.1373 35 1 4.9699 -2.2172 0.6336 36 1 3.3078 -2.8511 0.6949 37 1 2.0194 -2.9342 -1.2497 38 1 1.7487 -2.4634 -3.6515 39 1 3.3480 -0.9886 -4.8049 40 1 5.2132 0.0221 -3.5548 41 1 5.4780 -0.4407 -1.1508 42 1 3.5368 -1.5627 3.1590 43 1 5.1297 -1.1401 2.4865 44 1 4.7859 2.5150 2.8392 45 1 5.8964 1.1850 2.4308 46 1 4.5298 1.5658 1.3557 47 1 3.8706 -0.2740 5.1602 48 1 5.5016 0.2344 4.6606 49 1 4.6232 3.3184 8.0997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461888414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:25 Heat of formation + Delta-G solvation = 4.880013 kcal Electronic energy + Delta-G solvation = -24039.680496 eV Core-core repulsion = 20965.713816 eV Total energy + Delta-G solvation = -3073.966680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78562 -37.91298 -35.24685 -34.01109 -32.24845 -31.11432 -30.91887 -27.61844 -26.90974 -26.51509 -26.05024 -23.60594 -22.56532 -21.70225 -20.81831 -19.89631 -18.80810 -16.87827 -16.67800 -15.87279 -15.32440 -15.27618 -14.68207 -14.31483 -14.13995 -13.96635 -13.68809 -13.44776 -13.17875 -12.90505 -12.84231 -12.54525 -12.32892 -12.08357 -11.93627 -11.58896 -11.53749 -11.41061 -11.12354 -11.00842 -10.92086 -10.75082 -10.63880 -10.49338 -10.43498 -10.31622 -9.71251 -9.64573 -9.34867 -9.02907 -8.89752 -8.61360 -8.48993 -8.04173 -5.99291 -3.95806 1.30862 1.38258 3.32684 3.40125 3.43482 3.68411 4.23003 4.48919 4.76945 4.82208 4.95245 5.03348 5.09947 5.15723 5.29013 5.34208 5.35983 5.47309 5.50305 5.55909 5.62285 5.72090 5.78545 5.87083 5.90212 5.96842 6.01268 6.07580 6.08845 6.12921 6.18041 6.30972 6.33758 6.40570 6.44739 6.48334 6.57385 6.63658 6.67558 6.76440 6.88504 6.96575 7.12017 7.19815 7.31834 7.33356 7.44404 7.55006 7.86259 8.60938 9.07075 9.63879 11.14247 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.003780 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.825295 B = 7405.115158 C = 7701.665165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.134 4.134 4 C 0.059 3.941 5 N -0.525 5.525 6 C 0.089 3.911 7 C -0.063 4.063 8 C -0.114 4.114 9 C -0.125 4.125 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.094 4.094 13 C 0.058 3.942 14 C -0.068 4.068 15 H 0.062 0.938 16 C -0.125 4.125 17 C -0.010 4.010 18 C -0.510 4.510 19 H 0.073 0.927 20 C 0.064 3.936 21 N -0.906 5.906 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.028 0.972 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.036 0.964 46 H 0.048 0.952 47 H 0.011 0.989 48 H 0.010 0.990 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -11.378 -20.556 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.191 4.191 4 C -0.069 4.069 5 N -0.248 5.248 6 C -0.039 4.039 7 C -0.064 4.064 8 C -0.133 4.133 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.112 4.112 13 C -0.069 4.069 14 C -0.087 4.087 15 H 0.080 0.920 16 C -0.182 4.182 17 C -0.048 4.048 18 C -0.548 4.548 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.705 3.295 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.192 1.192 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.029 0.971 48 H 0.028 0.972 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.302 -10.871 -20.593 23.519 hybrid contribution 0.041 -1.344 1.128 1.755 sum -3.261 -12.215 -19.465 23.210 Atomic orbital electron populations 1.21821 0.96136 1.00906 1.01553 1.21358 0.94152 0.97507 0.98935 1.21699 1.02022 0.94891 1.00511 1.22297 0.87025 0.98605 0.98979 1.61922 1.09077 1.38450 1.15330 1.21154 1.01073 0.91712 0.89945 1.19786 0.94723 0.96679 0.95167 1.20993 0.97669 1.00230 0.94373 1.21043 0.99375 0.99192 0.94690 1.21080 0.95506 0.98179 0.99668 1.21144 0.98247 0.99990 0.94623 1.21008 0.99210 0.96993 0.94017 1.22400 0.98659 0.98849 0.87029 1.20993 0.99898 0.92104 0.95720 0.91988 1.21624 0.98044 0.99789 0.98736 1.19628 0.95623 0.97752 0.91774 1.21129 1.41191 0.96399 0.96049 0.90845 1.25026 0.95483 0.95343 0.97761 1.69918 1.48969 1.22771 1.12875 0.86815 0.79783 0.83632 0.79235 1.20406 1.21555 1.19176 0.92791 0.93013 0.93455 0.89868 0.94340 0.93055 0.91485 0.95186 0.90479 0.90182 0.94209 0.86655 0.86548 0.86607 0.86376 0.85884 0.95339 0.91440 0.92442 0.94534 0.93334 0.97095 0.97181 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16 2 C -0.10 -1.24 2.85 -90.62 -0.26 -1.50 16 3 C -0.13 -1.81 9.01 37.16 0.33 -1.48 16 4 C 0.06 0.79 4.23 -3.83 -0.02 0.77 16 5 N -0.52 -7.12 3.36 -236.07 -0.79 -7.91 16 6 C 0.09 1.04 5.16 -4.97 -0.03 1.01 16 7 C -0.06 -0.70 3.75 -104.63 -0.39 -1.09 16 8 C -0.11 -1.16 7.52 -39.58 -0.30 -1.46 16 9 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 11 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 12 C -0.09 -1.04 9.74 -39.59 -0.39 -1.43 16 13 C 0.06 0.92 4.30 -3.82 -0.02 0.90 16 14 C -0.07 -1.32 2.34 -90.62 -0.21 -1.54 16 15 H 0.06 1.27 6.51 -51.92 -0.34 0.93 16 16 C -0.12 -2.35 8.90 37.16 0.33 -2.02 16 17 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 18 C -0.51 -14.39 8.96 -34.44 -0.31 -14.70 16 19 H 0.07 2.24 7.30 -52.49 -0.38 1.85 16 20 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.91 -28.10 13.96 55.43 0.77 -27.32 16 22 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.02 3.84 -51.93 -0.20 0.82 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 33 H 0.03 0.38 7.54 -51.93 -0.39 -0.01 16 34 H 0.08 1.17 6.21 -51.93 -0.32 0.85 16 35 H 0.08 0.91 7.62 -51.93 -0.40 0.51 16 36 H 0.04 0.44 7.43 -51.93 -0.39 0.06 16 37 H 0.12 1.07 8.00 -52.48 -0.42 0.65 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.03 0.46 8.04 -51.93 -0.42 0.04 16 43 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 44 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.82 6.38 -51.93 -0.33 0.49 16 47 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 48 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -29.85 374.75 -10.18 -40.03 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.84 Total: -0.53 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -2.29 Total: -27.14 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.02 Total: -35.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.85 -10.18 -40.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461888414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.908 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds