Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 C 1.53003 * 109.47241 * 120.00049 * 2 1 3 5 5 N 1.46890 * 109.47254 * 175.32188 * 4 2 1 6 6 C 1.46908 * 111.00277 * 275.05044 * 5 4 2 7 7 C 1.50695 * 109.46886 * 76.67465 * 6 5 4 8 8 C 1.38234 * 119.99797 * 254.60095 * 7 6 5 9 9 C 1.38240 * 120.00174 * 179.77045 * 8 7 6 10 10 C 1.38231 * 119.99472 * 0.48010 * 9 8 7 11 11 C 1.38232 * 120.00299 * 359.79655 * 10 9 8 12 12 C 1.38228 * 120.00397 * 74.87726 * 7 6 5 13 13 C 1.46904 * 110.99924 * 151.09837 * 5 4 2 14 14 C 1.52997 * 109.47016 * 287.46272 * 13 5 4 15 15 H 1.09008 * 109.46413 * 54.09073 * 14 13 5 16 16 C 1.52999 * 109.47690 * 294.09334 * 14 13 5 17 17 C 1.53002 * 109.47263 * 174.08823 * 14 13 5 18 18 C 1.50704 * 109.47188 * 185.00551 * 17 14 13 19 19 H 1.08002 * 119.99613 * 0.02562 * 18 17 14 20 20 C 1.37868 * 119.99835 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99988 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47077 * 90.00489 * 22 20 18 24 24 H 1.48507 * 109.47137 * 209.99958 * 22 20 18 25 25 H 1.48491 * 109.47215 * 330.00079 * 22 20 18 26 26 H 1.08994 * 109.46828 * 299.99807 * 1 2 3 27 27 H 1.09001 * 109.46882 * 59.99808 * 1 2 3 28 28 H 1.08997 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47393 * 239.99925 * 2 1 3 30 30 H 1.08993 * 109.46964 * 305.74301 * 3 2 1 31 31 H 1.09000 * 109.46877 * 65.74834 * 3 2 1 32 32 H 1.09000 * 109.46934 * 185.74244 * 3 2 1 33 33 H 1.09003 * 109.47047 * 55.31944 * 4 2 1 34 34 H 1.08997 * 109.47249 * 295.32652 * 4 2 1 35 35 H 1.08994 * 109.47084 * 196.67825 * 6 5 4 36 36 H 1.09005 * 109.46630 * 316.67448 * 6 5 4 37 37 H 1.08003 * 120.00342 * 359.97438 * 8 7 6 38 38 H 1.07999 * 120.00373 * 180.25308 * 9 8 7 39 39 H 1.08007 * 120.00262 * 179.76864 * 10 9 8 40 40 H 1.08008 * 120.00082 * 179.97438 * 11 10 9 41 41 H 1.07997 * 119.99828 * 359.97438 * 12 7 6 42 42 H 1.08996 * 109.47172 * 47.46919 * 13 5 4 43 43 H 1.09003 * 109.46883 * 167.46960 * 13 5 4 44 44 H 1.08996 * 109.47502 * 179.97438 * 16 14 13 45 45 H 1.08999 * 109.46527 * 299.99786 * 16 14 13 46 46 H 1.09003 * 109.47126 * 59.99715 * 16 14 13 47 47 H 1.08999 * 109.46773 * 305.00653 * 17 14 13 48 48 H 1.09000 * 109.46566 * 65.00471 * 17 14 13 49 49 H 0.97000 * 119.99877 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5046 -0.8199 1.1941 6 6 3.9244 -1.9954 0.4195 7 6 3.7621 -1.7118 -1.0515 8 6 2.7183 -2.2837 -1.7546 9 6 2.5665 -2.0198 -3.1031 10 6 3.4644 -1.1919 -3.7505 11 6 4.5115 -0.6245 -3.0487 12 6 4.6602 -0.8843 -1.6992 13 6 4.0817 -0.8459 2.5448 14 6 3.9770 0.5461 3.1710 15 1 2.9414 0.8842 3.1336 16 6 4.8609 1.5232 2.3933 17 6 4.4417 0.4864 4.6276 18 6 4.2235 1.8273 5.2799 19 1 3.7957 2.6406 4.7124 20 6 4.5699 2.0157 6.6009 21 7 4.3791 3.1858 7.1703 22 14 5.3091 0.6088 7.5825 23 1 6.7879 0.6356 7.4493 24 1 4.9384 0.7549 9.0131 25 1 4.7888 -0.6824 7.0657 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.5952 1.9851 -0.8341 31 1 1.7632 1.9257 0.9370 32 1 3.1252 1.4442 -0.1028 33 1 1.6099 -1.7219 1.2922 34 1 1.7468 -0.1614 2.1373 35 1 4.9699 -2.2172 0.6336 36 1 3.3078 -2.8511 0.6949 37 1 2.0194 -2.9342 -1.2497 38 1 1.7487 -2.4634 -3.6515 39 1 3.3480 -0.9886 -4.8049 40 1 5.2132 0.0221 -3.5548 41 1 5.4780 -0.4407 -1.1508 42 1 3.5368 -1.5627 3.1590 43 1 5.1297 -1.1401 2.4865 44 1 4.7859 2.5150 2.8392 45 1 5.8964 1.1850 2.4308 46 1 4.5298 1.5658 1.3557 47 1 3.8706 -0.2740 5.1602 48 1 5.5016 0.2344 4.6606 49 1 4.6232 3.3184 8.0997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461888414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = -9.276802 kcal Electronic energy + Delta-G solvation = -24040.294381 eV Core-core repulsion = 20965.713816 eV Total energy + Delta-G solvation = -3074.580565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66383 -38.97161 -36.70242 -35.24033 -34.15614 -32.18689 -31.65806 -29.50299 -27.93286 -27.48831 -27.36202 -25.13892 -23.37329 -23.08978 -21.72312 -21.02147 -20.32410 -18.90777 -17.55462 -16.96988 -16.52110 -16.18004 -16.01000 -15.66657 -15.33750 -15.17563 -15.10788 -14.67599 -14.22795 -14.17421 -13.87317 -13.73248 -13.60484 -13.33025 -13.15772 -13.03619 -12.82519 -12.68643 -12.46163 -12.43278 -12.22453 -11.89476 -11.79321 -11.74076 -11.64372 -11.61371 -11.40412 -11.25857 -11.04701 -10.95692 -10.72529 -9.64825 -9.41669 -9.13057 -8.25083 -6.27119 0.55127 0.63642 1.35737 1.37384 1.49090 2.38108 2.83068 3.10189 3.25184 3.91740 3.97901 4.05412 4.15590 4.18909 4.27553 4.32036 4.38799 4.41571 4.49735 4.55753 4.63636 4.67163 4.74786 4.83975 4.85391 4.87532 4.88837 4.93904 4.99612 5.05847 5.10927 5.14046 5.18368 5.23566 5.28314 5.32573 5.40777 5.44381 5.56562 5.60082 5.65412 5.68527 5.74086 5.75379 5.76494 5.84982 6.20036 6.24958 6.31498 6.38003 6.80659 7.36228 8.91915 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.003780 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.825295 B = 7405.115158 C = 7701.665165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.129 4.129 4 C 0.061 3.939 5 N -0.527 5.527 6 C 0.091 3.909 7 C -0.073 4.073 8 C -0.120 4.120 9 C -0.127 4.127 10 C -0.129 4.129 11 C -0.130 4.130 12 C -0.109 4.109 13 C 0.069 3.931 14 C -0.062 4.062 15 H 0.045 0.955 16 C -0.113 4.113 17 C -0.006 4.006 18 C -0.515 4.515 19 H 0.032 0.968 20 C 0.000 4.000 21 N -0.955 5.955 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.287 1.287 25 H -0.247 1.247 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.030 0.970 43 H 0.078 0.922 44 H 0.021 0.979 45 H 0.043 0.957 46 H 0.066 0.934 47 H 0.013 0.987 48 H 0.017 0.983 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -14.136 -22.260 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.187 4.187 4 C -0.067 4.067 5 N -0.250 5.250 6 C -0.036 4.036 7 C -0.074 4.074 8 C -0.138 4.138 9 C -0.145 4.145 10 C -0.147 4.147 11 C -0.148 4.148 12 C -0.127 4.127 13 C -0.058 4.058 14 C -0.081 4.081 15 H 0.063 0.937 16 C -0.171 4.171 17 C -0.044 4.044 18 C -0.553 4.553 19 H 0.050 0.950 20 C -0.196 4.196 21 N -0.597 5.597 22 Si 0.772 3.228 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.171 1.171 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.048 0.952 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.031 0.969 48 H 0.035 0.965 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.238 -13.641 -22.323 26.361 hybrid contribution -0.027 -0.391 1.554 1.602 sum -3.265 -14.032 -20.770 25.277 Atomic orbital electron populations 1.21799 0.95022 1.01812 1.01534 1.21322 0.95027 0.96313 0.98649 1.21642 1.01280 0.95987 0.99761 1.22273 0.87015 0.98957 0.98453 1.61846 1.09152 1.40030 1.14022 1.21173 1.01436 0.90939 0.90081 1.19747 0.95425 0.97452 0.94760 1.21152 0.97506 1.00280 0.94877 1.21339 0.99824 0.98833 0.94540 1.21387 0.94979 0.97595 1.00750 1.21364 0.98866 1.00237 0.94366 1.21077 0.99397 0.97554 0.94698 1.22133 0.99607 0.95903 0.88171 1.20835 0.98696 0.94764 0.93792 0.93701 1.21497 0.98501 0.97698 0.99354 1.19574 0.96047 0.94820 0.93985 1.21436 1.40222 0.97524 0.96148 0.95010 1.26004 0.96168 0.98256 0.99132 1.70081 1.50764 1.25377 1.13445 0.85686 0.79251 0.80521 0.77333 1.19251 1.21280 1.17062 0.93787 0.92089 0.92085 0.89062 0.93327 0.95142 0.92683 0.93978 0.92901 0.89782 0.93283 0.85673 0.84479 0.84569 0.85154 0.86549 0.95213 0.90340 0.95979 0.93767 0.91551 0.96853 0.96452 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 2 C -0.09 -2.21 2.85 -10.79 -0.03 -2.24 16 3 C -0.13 -3.47 9.01 71.98 0.65 -2.83 16 4 C 0.06 1.56 4.23 86.31 0.36 1.93 16 5 N -0.53 -13.61 3.36 -900.80 -3.03 -16.64 16 6 C 0.09 1.93 5.16 85.55 0.44 2.37 16 7 C -0.07 -1.48 3.75 -19.87 -0.07 -1.55 16 8 C -0.12 -2.12 7.52 22.27 0.17 -1.95 16 9 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 10 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 11 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 12 C -0.11 -2.25 9.74 22.27 0.22 -2.03 16 13 C 0.07 2.11 4.30 86.30 0.37 2.48 16 14 C -0.06 -2.42 2.34 -10.79 -0.03 -2.44 16 15 H 0.04 1.90 6.51 -2.38 -0.02 1.88 16 16 C -0.11 -4.35 8.90 71.98 0.64 -3.71 16 17 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 18 C -0.52 -30.04 8.96 25.60 0.23 -29.81 16 19 H 0.03 2.06 7.30 -2.91 -0.02 2.03 16 20 C 0.00 0.01 5.47 84.65 0.46 0.48 16 21 N -0.96 -61.13 13.96 21.44 0.30 -60.83 16 22 Si 0.95 45.02 27.47 68.60 1.88 46.90 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.03 3.84 -2.39 -0.01 2.02 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 1.59 6.51 -2.39 -0.02 1.57 16 33 H 0.04 0.98 7.54 -2.39 -0.02 0.96 16 34 H 0.05 1.62 6.21 -2.39 -0.01 1.61 16 35 H 0.08 1.72 7.62 -2.39 -0.02 1.70 16 36 H 0.05 0.96 7.43 -2.38 -0.02 0.94 16 37 H 0.13 1.93 8.00 -2.91 -0.02 1.90 16 38 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.03 0.90 8.04 -2.39 -0.02 0.88 16 43 H 0.08 2.23 7.66 -2.39 -0.02 2.21 16 44 H 0.02 0.96 6.95 -2.39 -0.02 0.95 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 2.28 6.38 -2.39 -0.02 2.26 16 47 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 48 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 49 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -65.81 374.75 4.83 -60.98 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.83 Total: 17.12 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 4.85 Total: -47.54 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -2.73 Total: -77.47 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -65.81 4.83 -60.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461888414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.708 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds