Wall clock time and date at job start Tue Mar 31 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47497 * 2 1 4 4 N 1.46896 * 109.47211 * 183.02378 * 3 2 1 5 5 C 1.46895 * 111.00341 * 63.42766 * 4 3 2 6 6 C 1.50708 * 109.46988 * 66.04625 * 5 4 3 7 7 C 1.38231 * 120.00113 * 90.00447 * 6 5 4 8 8 C 1.38229 * 119.99880 * 179.72957 * 7 6 5 9 9 C 1.38235 * 120.00353 * 0.24861 * 8 7 6 10 10 C 1.50702 * 120.00392 * 180.02562 * 9 8 7 11 11 C 1.38236 * 119.99806 * 0.02562 * 9 8 7 12 12 C 1.38233 * 120.00130 * 359.95572 * 11 9 8 13 13 C 1.46903 * 111.00115 * 299.47065 * 4 3 2 14 14 C 1.52994 * 109.47347 * 288.32248 * 13 4 3 15 15 H 1.09001 * 109.47297 * 57.07329 * 14 13 4 16 16 C 1.52993 * 109.47189 * 297.07381 * 14 13 4 17 17 C 1.53000 * 109.47140 * 177.07303 * 14 13 4 18 18 C 1.50700 * 109.47215 * 184.99770 * 17 14 13 19 19 H 1.08004 * 119.99942 * 0.02562 * 18 17 14 20 20 C 1.37870 * 120.00324 * 179.97438 * 18 17 14 21 21 N 1.31509 * 120.00421 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99882 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47393 * 89.99467 * 22 20 18 24 24 H 1.48500 * 109.47365 * 210.00085 * 22 20 18 25 25 H 1.48507 * 109.46934 * 329.99755 * 22 20 18 26 26 H 1.09001 * 109.47311 * 300.00723 * 1 2 3 27 27 H 1.09001 * 109.46917 * 59.99841 * 1 2 3 28 28 H 1.08995 * 109.47539 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47311 * 239.99277 * 2 1 3 30 30 H 1.09005 * 109.47200 * 119.99470 * 2 1 3 31 31 H 1.09002 * 109.47156 * 63.01809 * 3 2 1 32 32 H 1.09000 * 109.46529 * 303.02122 * 3 2 1 33 33 H 1.09001 * 109.47109 * 306.05107 * 5 4 3 34 34 H 1.08999 * 109.47871 * 186.04510 * 5 4 3 35 35 H 1.08004 * 119.99980 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.99697 * 180.27943 * 8 7 6 37 37 H 1.09000 * 109.47269 * 89.99647 * 10 9 8 38 38 H 1.08999 * 109.46892 * 210.00245 * 10 9 8 39 39 H 1.09008 * 109.46666 * 329.99737 * 10 9 8 40 40 H 1.08004 * 120.00074 * 179.97438 * 11 9 8 41 41 H 1.08005 * 120.00386 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.46564 * 48.32460 * 13 4 3 43 43 H 1.09004 * 109.47338 * 168.31495 * 13 4 3 44 44 H 1.09006 * 109.47452 * 59.99657 * 16 14 13 45 45 H 1.09002 * 109.47719 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.46958 * 300.00155 * 16 14 13 47 47 H 1.09001 * 109.47086 * 305.00103 * 17 14 13 48 48 H 1.08997 * 109.46906 * 64.99827 * 17 14 13 49 49 H 0.97003 * 120.00509 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5072 1.4431 -0.0731 5 6 3.9717 0.8515 -1.3348 6 6 3.5551 1.7312 -2.4854 7 6 4.3911 2.7426 -2.9202 8 6 4.0114 3.5458 -3.9791 9 6 2.7935 3.3410 -4.6001 10 6 2.3798 4.2163 -5.7550 11 6 1.9550 2.3331 -4.1617 12 6 2.3348 1.5296 -3.1030 13 6 4.0921 0.7477 1.0812 14 6 3.9134 1.6037 2.3366 15 1 2.8544 1.8152 2.4845 16 6 4.6776 2.9186 2.1702 17 6 4.4570 0.8480 3.5508 18 6 4.1709 1.6366 4.8027 19 1 3.6527 2.5821 4.7388 20 6 4.5696 1.1508 6.0298 21 7 4.3195 1.8387 7.1224 22 14 5.4652 -0.4849 6.1406 23 1 6.9286 -0.2562 6.0336 24 1 5.1588 -1.1299 7.4426 25 1 5.0201 -1.3689 5.0334 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7216 1.9405 0.9158 32 1 1.6331 1.9717 -0.8617 33 1 3.5312 -0.1381 -1.4560 34 1 5.0582 0.7659 -1.3178 35 1 5.3426 2.9027 -2.4350 36 1 4.6666 4.3331 -4.3217 37 1 2.7245 3.7725 -6.6890 38 1 1.2935 4.3040 -5.7735 39 1 2.8223 5.2056 -5.6377 40 1 1.0033 2.1733 -4.6466 41 1 1.6799 0.7419 -2.7607 42 1 3.5910 -0.2103 1.2203 43 1 5.1544 0.5796 0.9041 44 1 4.2904 3.4571 1.3051 45 1 4.5507 3.5284 3.0648 46 1 5.7366 2.7072 2.0223 47 1 3.9748 -0.1273 3.6175 48 1 5.5334 0.7145 3.4436 49 1 4.6003 1.4970 7.9857 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462025798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:21 Heat of formation + Delta-G solvation = -13.879832 kcal Electronic energy + Delta-G solvation = -23377.209785 eV Core-core repulsion = 20302.429617 eV Total energy + Delta-G solvation = -3074.780168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73604 -39.25224 -36.56456 -34.39629 -34.30210 -32.85783 -31.73332 -29.78961 -28.87871 -27.59904 -26.32675 -24.74187 -23.73012 -23.50027 -22.17564 -21.05562 -20.16061 -18.87081 -17.10873 -16.97931 -16.74108 -16.30061 -15.95921 -15.81059 -15.51057 -15.12794 -14.99921 -14.62611 -14.46363 -14.20887 -14.17600 -13.65709 -13.47984 -13.24979 -13.05187 -12.85846 -12.81652 -12.70174 -12.59246 -12.54592 -12.39882 -12.22090 -12.12250 -11.85043 -11.75424 -11.69183 -11.57131 -11.18854 -11.12641 -10.97662 -10.72801 -9.73135 -9.40306 -9.00582 -8.25330 -6.27469 0.46787 0.58436 1.35749 1.37307 1.49079 2.37998 2.77426 3.09898 3.28713 3.86363 3.94329 3.98540 4.07771 4.14226 4.18351 4.22591 4.30665 4.38500 4.42731 4.51709 4.57912 4.64443 4.69412 4.75072 4.78347 4.87080 4.89227 4.92493 4.93488 5.00639 5.02963 5.05834 5.10569 5.18997 5.26970 5.28082 5.34231 5.38541 5.43274 5.46589 5.56760 5.59328 5.71304 5.75125 5.77493 5.80778 6.16264 6.21894 6.26784 6.37463 6.80216 7.35901 8.91664 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.003356 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.706477 B = 8342.146569 C = 8844.273225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.160 4.160 3 C 0.054 3.946 4 N -0.531 5.531 5 C 0.091 3.909 6 C -0.087 4.087 7 C -0.109 4.109 8 C -0.133 4.133 9 C -0.098 4.098 10 C -0.112 4.112 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.065 3.935 14 C -0.063 4.063 15 H 0.045 0.955 16 C -0.113 4.113 17 C -0.005 4.005 18 C -0.516 4.516 19 H 0.032 0.968 20 C 0.001 3.999 21 N -0.955 5.955 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.247 1.247 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.023 0.977 46 H 0.044 0.956 47 H 0.014 0.986 48 H 0.017 0.983 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 -2.120 -27.627 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.199 4.199 3 C -0.074 4.074 4 N -0.253 5.253 5 C -0.036 4.036 6 C -0.088 4.088 7 C -0.127 4.127 8 C -0.150 4.150 9 C -0.099 4.099 10 C -0.168 4.168 11 C -0.149 4.149 12 C -0.134 4.134 13 C -0.062 4.062 14 C -0.082 4.082 15 H 0.063 0.937 16 C -0.170 4.170 17 C -0.043 4.043 18 C -0.554 4.554 19 H 0.050 0.950 20 C -0.195 4.195 21 N -0.597 5.597 22 Si 0.772 3.228 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.170 1.170 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.032 0.968 48 H 0.035 0.965 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.791 -1.628 -27.438 27.746 hybrid contribution 0.091 -1.158 1.089 1.592 sum -3.700 -2.786 -26.349 26.753 Atomic orbital electron populations 1.21643 0.94506 1.02024 1.01962 1.22129 0.97524 0.98443 1.01773 1.22240 0.87166 0.95896 1.02104 1.62167 1.07702 1.54332 1.01125 1.21098 1.00621 0.94909 0.87000 1.19775 0.95139 0.97344 0.96518 1.21172 1.00082 0.94879 0.96609 1.21255 0.96897 1.00284 0.96613 1.20243 0.94466 0.97029 0.98126 1.20818 1.02268 0.98429 0.95331 1.21240 1.00370 0.95872 0.97386 1.21205 0.95834 1.00095 0.96310 1.22161 0.99478 0.94915 0.89685 1.20824 0.98766 0.95705 0.92934 0.93683 1.21455 0.99135 0.96815 0.99589 1.19555 0.96000 0.95455 0.93291 1.21441 1.36270 1.06062 0.91662 0.94972 1.26001 0.96837 1.01371 0.95314 1.70076 1.49652 1.41031 0.98900 0.85691 0.79275 0.79942 0.77927 1.19258 1.21230 1.17016 0.93522 0.91630 0.92130 0.90971 0.93023 0.92491 0.90037 0.93085 0.89940 0.85945 0.84941 0.90365 0.90859 0.91081 0.84614 0.85597 0.94292 0.90733 0.92026 0.95775 0.93670 0.96758 0.96480 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.91 71.98 0.71 -2.12 16 2 C -0.16 -3.63 5.17 30.59 0.16 -3.47 16 3 C 0.05 1.39 4.83 86.30 0.42 1.81 16 4 N -0.53 -14.31 4.02 -900.79 -3.62 -17.94 16 5 C 0.09 2.02 4.93 85.56 0.42 2.44 16 6 C -0.09 -1.88 4.90 -19.86 -0.10 -1.98 16 7 C -0.11 -2.33 9.70 22.27 0.22 -2.11 16 8 C -0.13 -2.51 9.70 22.27 0.22 -2.30 16 9 C -0.10 -1.72 5.88 -19.87 -0.12 -1.83 16 10 C -0.11 -1.32 10.01 71.24 0.71 -0.60 16 11 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 12 C -0.12 -2.25 7.90 22.27 0.18 -2.07 16 13 C 0.07 2.02 4.22 86.30 0.36 2.39 16 14 C -0.06 -2.51 2.33 -10.80 -0.03 -2.54 16 15 H 0.04 1.92 6.64 -2.39 -0.02 1.90 16 16 C -0.11 -4.42 8.87 71.98 0.64 -3.78 16 17 C -0.01 -0.24 3.52 29.85 0.10 -0.14 16 18 C -0.52 -30.21 8.96 25.60 0.23 -29.98 16 19 H 0.03 2.08 7.30 -2.91 -0.02 2.06 16 20 C 0.00 0.04 5.47 84.65 0.46 0.50 16 21 N -0.96 -61.20 13.96 21.44 0.30 -60.90 16 22 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 25 H -0.25 -10.85 6.54 99.48 0.65 -10.19 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.45 5.72 -2.39 -0.01 1.43 16 30 H 0.05 1.37 6.34 -2.38 -0.02 1.35 16 31 H 0.06 1.74 6.62 -2.39 -0.02 1.72 16 32 H 0.08 1.98 5.91 -2.39 -0.01 1.96 16 33 H 0.05 1.06 6.00 -2.39 -0.01 1.04 16 34 H 0.08 1.78 7.81 -2.39 -0.02 1.76 16 35 H 0.12 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 39 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.13 2.17 7.35 -2.91 -0.02 2.15 16 42 H 0.04 1.20 5.84 -2.39 -0.01 1.18 16 43 H 0.07 2.20 7.82 -2.39 -0.02 2.18 16 44 H 0.06 2.20 7.69 -2.38 -0.02 2.18 16 45 H 0.02 1.07 6.95 -2.39 -0.02 1.05 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 48 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 49 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -66.67 374.31 4.20 -62.46 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.84 Total: 17.29 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 4.81 Total: -47.88 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -3.32 Total: -78.84 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -66.67 4.20 -62.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462025798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.582 kcal (2) G-P(sol) polarization free energy of solvation -66.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds