Wall clock time and date at job start Tue Mar 31 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50708 * 109.46961 * 2 1 4 4 C 1.38250 * 119.99855 * 270.02167 * 3 2 1 5 5 C 1.38223 * 120.00013 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.99423 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00365 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00302 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.47052 * 257.11716 * 8 7 6 10 10 C 1.46900 * 111.00127 * 154.27764 * 9 8 7 11 11 C 1.50695 * 109.47411 * 207.27426 * 10 9 8 12 12 H 1.08002 * 119.99841 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00230 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99937 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00202 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47020 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46848 * 120.00009 * 15 13 11 18 18 H 1.48502 * 109.46987 * 240.00264 * 15 13 11 19 19 C 1.46899 * 111.00134 * 278.23585 * 9 8 7 20 20 C 1.53005 * 109.46873 * 311.24357 * 19 9 8 21 21 C 1.52989 * 109.47372 * 89.80819 * 20 19 9 22 22 C 1.53006 * 109.46818 * 209.81268 * 20 19 9 23 23 C 1.53005 * 109.46767 * 329.81119 * 20 19 9 24 24 C 1.38204 * 119.99810 * 90.00357 * 3 2 1 25 25 H 1.09002 * 109.47170 * 59.99538 * 1 2 3 26 26 H 1.08994 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46752 * 299.99537 * 1 2 3 28 28 H 1.09001 * 109.46752 * 240.00463 * 2 1 3 29 29 H 1.08996 * 109.47569 * 120.00301 * 2 1 3 30 30 H 1.07998 * 120.00455 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00519 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.99381 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47355 * 17.11179 * 8 7 6 34 34 H 1.08996 * 109.47514 * 137.11608 * 8 7 6 35 35 H 1.08999 * 109.47138 * 327.27484 * 10 9 8 36 36 H 1.08999 * 109.47039 * 87.27327 * 10 9 8 37 37 H 0.96999 * 120.00093 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47379 * 71.23801 * 19 9 8 39 39 H 1.08997 * 109.47257 * 191.24424 * 19 9 8 40 40 H 1.08999 * 109.47187 * 52.98683 * 21 20 19 41 41 H 1.09001 * 109.47383 * 172.98054 * 21 20 19 42 42 H 1.09000 * 109.47681 * 292.98551 * 21 20 19 43 43 H 1.08995 * 109.46977 * 60.00310 * 22 20 19 44 44 H 1.09000 * 109.46438 * 179.97438 * 22 20 19 45 45 H 1.08999 * 109.46883 * 299.99517 * 22 20 19 46 46 H 1.08992 * 109.47535 * 37.30615 * 23 20 19 47 47 H 1.09001 * 109.47179 * 157.31060 * 23 20 19 48 48 H 1.09007 * 109.46829 * 277.30489 * 23 20 19 49 49 H 1.08006 * 120.00255 * 359.71995 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0727 -1.1973 5 6 2.7225 3.3761 -1.1973 6 6 2.9533 4.0277 0.0001 7 6 2.7244 3.3756 1.1970 8 6 2.9755 4.0860 2.5021 9 7 4.2418 3.6159 3.0798 10 6 4.8293 4.6349 3.9598 11 6 6.3262 4.4648 3.9960 12 1 6.7943 3.6786 3.4223 13 6 7.0982 5.3134 4.7607 14 7 6.5281 6.2711 5.4589 15 14 8.9537 5.1021 4.8061 16 1 9.3431 3.9600 3.9407 17 1 9.6052 6.3417 4.3120 18 1 9.3877 4.8371 6.2014 19 6 4.0550 2.3467 3.7953 20 6 2.8520 2.4624 4.7336 21 6 1.5833 2.0389 3.9908 22 6 3.0613 1.5525 5.9457 23 6 2.7086 3.9118 5.2025 24 6 2.2627 2.0723 1.1969 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0816 1.5639 -2.1326 31 1 2.9018 3.8855 -2.1326 32 1 3.3125 5.0462 0.0001 33 1 3.0331 5.1601 2.3260 34 1 2.1600 3.8744 3.1937 35 1 4.5855 5.6272 3.5802 36 1 4.4263 4.5218 4.9662 37 1 7.0712 6.8680 5.9972 38 1 3.8792 1.5466 3.0762 39 1 4.9492 2.1225 4.3769 40 1 1.7323 1.0533 3.5499 41 1 0.7481 2.0014 4.6903 42 1 1.3654 2.7601 3.2031 43 1 3.9651 1.8543 6.4748 44 1 2.2044 1.6353 6.6143 45 1 3.1634 0.5200 5.6116 46 1 2.9607 4.5853 4.3835 47 1 1.6808 4.0917 5.5176 48 1 3.3822 4.0908 6.0406 49 1 2.0785 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473178766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:38 Heat of formation + Delta-G solvation = 71.649042 kcal Electronic energy + Delta-G solvation = -24561.864544 eV Core-core repulsion = 21490.793186 eV Total energy + Delta-G solvation = -3071.071357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29939 -38.50868 -34.44030 -33.70752 -32.46958 -31.21481 -29.28900 -27.78665 -27.46964 -26.69195 -25.84045 -23.81174 -23.58750 -21.61686 -20.62540 -19.76642 -18.45313 -16.49828 -16.16107 -15.67814 -15.09974 -15.05047 -14.66895 -14.19794 -14.06333 -13.77001 -13.60005 -13.31770 -13.06896 -12.95820 -12.73702 -12.22670 -12.05016 -11.77735 -11.66664 -11.41736 -11.25619 -11.15788 -11.12072 -11.03044 -10.85717 -10.75540 -10.60762 -10.53343 -10.34447 -10.29005 -9.89482 -9.68631 -9.64061 -9.06374 -8.45138 -8.34560 -8.22640 -6.98775 -5.95156 -3.94820 1.70452 1.74109 3.33840 3.41608 3.47342 4.06080 4.48985 4.85382 4.93934 5.07819 5.18913 5.20315 5.24135 5.29776 5.35389 5.38050 5.44177 5.48137 5.54907 5.67745 5.76810 5.79044 5.82674 5.88995 5.96173 5.97413 6.01469 6.02108 6.12803 6.13385 6.18696 6.29008 6.32761 6.41680 6.46188 6.52069 6.60384 6.71629 6.79044 6.83013 6.87048 6.92873 7.08336 7.27616 7.37497 7.48861 7.91178 8.18949 8.28592 8.63300 9.12840 9.67969 11.13993 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.004932 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.166465 B = 5675.566281 C = 6568.716821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.132 4.132 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.050 4.050 8 C 0.052 3.948 9 N -0.523 5.523 10 C 0.160 3.840 11 C -0.497 4.497 12 H 0.060 0.940 13 C 0.053 3.947 14 N -0.902 5.902 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.069 3.931 20 C -0.101 4.101 21 C -0.162 4.162 22 C -0.135 4.135 23 C -0.169 4.169 24 C -0.136 4.136 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.038 0.962 37 H 0.258 0.742 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -9.786 -7.384 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.150 4.150 5 C -0.139 4.139 6 C -0.131 4.131 7 C -0.051 4.051 8 C -0.075 4.075 9 N -0.245 5.245 10 C 0.036 3.964 11 C -0.536 4.536 12 H 0.079 0.921 13 C -0.147 4.147 14 N -0.543 5.543 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.060 4.060 20 C -0.103 4.103 21 C -0.218 4.218 22 C -0.192 4.192 23 C -0.225 4.225 24 C -0.153 4.153 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.055 0.945 48 H 0.085 0.915 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.370 -9.701 -7.648 17.482 hybrid contribution 0.664 0.204 0.642 0.946 sum -11.706 -9.497 -7.006 16.623 Atomic orbital electron populations 1.21741 0.95099 1.01268 1.02135 1.20498 0.95849 0.93223 1.02448 1.19817 0.99892 0.95810 0.93397 1.20867 1.01934 0.95168 0.97063 1.21030 1.00169 0.94985 0.97726 1.21076 0.99806 1.00229 0.92033 1.20028 0.95580 0.94153 0.95363 1.21928 0.94485 0.98283 0.92808 1.62212 1.21011 1.04870 1.36420 1.20627 0.94795 0.88774 0.92216 1.21294 0.91582 1.14599 1.26081 0.92131 1.24942 0.98484 0.95434 0.95820 1.69955 1.35216 1.18626 1.30468 0.86526 0.85891 0.77968 0.77545 1.19758 1.21196 1.21253 1.22299 0.96272 0.93144 0.94257 1.21197 0.96667 0.96082 0.96384 1.22782 0.97369 1.00994 1.00694 1.21854 1.01440 0.98744 0.97205 1.22948 0.99898 0.96251 1.03419 1.21778 1.00011 0.94956 0.98585 0.92742 0.92762 0.92555 0.91475 0.91289 0.87085 0.86769 0.86414 0.91173 0.90464 0.95994 0.94424 0.93191 0.92346 0.90332 0.92491 0.93335 0.90247 0.92242 0.93500 0.93237 0.88991 0.94543 0.91452 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.08 -0.87 6.06 -27.88 -0.17 -1.04 16 3 C -0.09 -1.19 5.13 -104.63 -0.54 -1.72 16 4 C -0.13 -1.73 9.70 -39.58 -0.38 -2.12 16 5 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 6 C -0.11 -1.78 9.67 -39.58 -0.38 -2.16 16 7 C -0.05 -0.83 5.30 -104.63 -0.55 -1.38 16 8 C 0.05 0.92 3.72 -4.98 -0.02 0.90 16 9 N -0.52 -10.88 4.46 -237.52 -1.06 -11.95 16 10 C 0.16 3.96 3.41 -4.98 -0.02 3.95 16 11 C -0.50 -13.86 8.94 -34.44 -0.31 -14.16 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.07 1.28 4.85 -3.82 -0.02 1.26 16 20 C -0.10 -1.60 0.77 -154.51 -0.12 -1.72 16 21 C -0.16 -2.15 6.40 37.15 0.24 -1.91 16 22 C -0.13 -1.95 8.19 37.16 0.30 -1.64 16 23 C -0.17 -2.97 6.20 37.16 0.23 -2.74 16 24 C -0.14 -2.00 7.32 -39.58 -0.29 -2.29 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.12 1.80 8.02 -52.49 -0.42 1.38 16 33 H 0.07 1.30 7.22 -51.93 -0.37 0.92 16 34 H 0.08 1.27 2.36 -51.93 -0.12 1.15 16 35 H 0.02 0.59 7.38 -51.93 -0.38 0.21 16 36 H 0.04 0.95 3.83 -51.93 -0.20 0.75 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.06 1.01 6.07 -51.93 -0.32 0.70 16 39 H 0.08 1.62 7.36 -51.93 -0.38 1.24 16 40 H 0.06 0.70 6.39 -51.93 -0.33 0.36 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.09 3.61 -51.93 -0.19 0.91 16 43 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.77 2.69 -51.93 -0.14 1.63 16 47 H 0.04 0.56 7.94 -51.93 -0.41 0.15 16 48 H 0.07 1.33 6.74 -51.93 -0.35 0.98 16 49 H 0.14 1.95 2.65 -52.48 -0.14 1.81 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -29.24 357.28 -10.06 -39.30 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.95 Total: 4.54 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -2.15 Total: -28.41 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.32 Total: -37.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.24 -10.06 -39.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473178766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.950 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds