Wall clock time and date at job start Tue Mar 31 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50708 * 109.46961 * 2 1 4 4 C 1.38250 * 119.99855 * 270.02167 * 3 2 1 5 5 C 1.38223 * 120.00013 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.99423 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00365 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00302 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.47052 * 257.11716 * 8 7 6 10 10 C 1.46900 * 111.00127 * 154.27764 * 9 8 7 11 11 C 1.50695 * 109.47411 * 207.27426 * 10 9 8 12 12 H 1.08002 * 119.99841 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00230 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99937 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00202 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47020 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46848 * 120.00009 * 15 13 11 18 18 H 1.48502 * 109.46987 * 240.00264 * 15 13 11 19 19 C 1.46899 * 111.00134 * 278.23585 * 9 8 7 20 20 C 1.53005 * 109.46873 * 311.24357 * 19 9 8 21 21 C 1.52989 * 109.47372 * 89.80819 * 20 19 9 22 22 C 1.53006 * 109.46818 * 209.81268 * 20 19 9 23 23 C 1.53005 * 109.46767 * 329.81119 * 20 19 9 24 24 C 1.38204 * 119.99810 * 90.00357 * 3 2 1 25 25 H 1.09002 * 109.47170 * 59.99538 * 1 2 3 26 26 H 1.08994 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46752 * 299.99537 * 1 2 3 28 28 H 1.09001 * 109.46752 * 240.00463 * 2 1 3 29 29 H 1.08996 * 109.47569 * 120.00301 * 2 1 3 30 30 H 1.07998 * 120.00455 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00519 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.99381 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47355 * 17.11179 * 8 7 6 34 34 H 1.08996 * 109.47514 * 137.11608 * 8 7 6 35 35 H 1.08999 * 109.47138 * 327.27484 * 10 9 8 36 36 H 1.08999 * 109.47039 * 87.27327 * 10 9 8 37 37 H 0.96999 * 120.00093 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47379 * 71.23801 * 19 9 8 39 39 H 1.08997 * 109.47257 * 191.24424 * 19 9 8 40 40 H 1.08999 * 109.47187 * 52.98683 * 21 20 19 41 41 H 1.09001 * 109.47383 * 172.98054 * 21 20 19 42 42 H 1.09000 * 109.47681 * 292.98551 * 21 20 19 43 43 H 1.08995 * 109.46977 * 60.00310 * 22 20 19 44 44 H 1.09000 * 109.46438 * 179.97438 * 22 20 19 45 45 H 1.08999 * 109.46883 * 299.99517 * 22 20 19 46 46 H 1.08992 * 109.47535 * 37.30615 * 23 20 19 47 47 H 1.09001 * 109.47179 * 157.31060 * 23 20 19 48 48 H 1.09007 * 109.46829 * 277.30489 * 23 20 19 49 49 H 1.08006 * 120.00255 * 359.71995 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0727 -1.1973 5 6 2.7225 3.3761 -1.1973 6 6 2.9533 4.0277 0.0001 7 6 2.7244 3.3756 1.1970 8 6 2.9755 4.0860 2.5021 9 7 4.2418 3.6159 3.0798 10 6 4.8293 4.6349 3.9598 11 6 6.3262 4.4648 3.9960 12 1 6.7943 3.6786 3.4223 13 6 7.0982 5.3134 4.7607 14 7 6.5281 6.2711 5.4589 15 14 8.9537 5.1021 4.8061 16 1 9.3431 3.9600 3.9407 17 1 9.6052 6.3417 4.3120 18 1 9.3877 4.8371 6.2014 19 6 4.0550 2.3467 3.7953 20 6 2.8520 2.4624 4.7336 21 6 1.5833 2.0389 3.9908 22 6 3.0613 1.5525 5.9457 23 6 2.7086 3.9118 5.2025 24 6 2.2627 2.0723 1.1969 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0816 1.5639 -2.1326 31 1 2.9018 3.8855 -2.1326 32 1 3.3125 5.0462 0.0001 33 1 3.0331 5.1601 2.3260 34 1 2.1600 3.8744 3.1937 35 1 4.5855 5.6272 3.5802 36 1 4.4263 4.5218 4.9662 37 1 7.0712 6.8680 5.9972 38 1 3.8792 1.5466 3.0762 39 1 4.9492 2.1225 4.3769 40 1 1.7323 1.0533 3.5499 41 1 0.7481 2.0014 4.6903 42 1 1.3654 2.7601 3.2031 43 1 3.9651 1.8543 6.4748 44 1 2.2044 1.6353 6.6143 45 1 3.1634 0.5200 5.6116 46 1 2.9607 4.5853 4.3835 47 1 1.6808 4.0917 5.5176 48 1 3.3822 4.0908 6.0406 49 1 2.0785 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473178766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:37 Heat of formation + Delta-G solvation = 56.837060 kcal Electronic energy + Delta-G solvation = -24562.506840 eV Core-core repulsion = 21490.793186 eV Total energy + Delta-G solvation = -3071.713653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67390 -39.69516 -35.72769 -35.13063 -34.17693 -32.59293 -30.28097 -29.41059 -28.86440 -28.18805 -27.16825 -25.37765 -24.63819 -22.93561 -22.09752 -20.97341 -19.77094 -18.52816 -17.33565 -16.92860 -16.81119 -16.39877 -16.09606 -15.56631 -15.47773 -15.07547 -14.74336 -14.40895 -14.32609 -14.18139 -13.94763 -13.76894 -13.23689 -13.03909 -12.94202 -12.83533 -12.65443 -12.60367 -12.47941 -12.42333 -12.30545 -12.16516 -12.04364 -11.83149 -11.77593 -11.57578 -11.41816 -11.36605 -11.09347 -10.90389 -10.47872 -9.55846 -9.39269 -8.66290 -8.10907 -6.20955 0.57714 0.62435 1.38018 1.39359 1.52309 2.41939 2.91644 3.16969 3.58962 3.87531 3.91745 3.95440 4.02640 4.05568 4.11459 4.33030 4.38790 4.41022 4.56230 4.57934 4.60006 4.67621 4.69913 4.72558 4.77991 4.81125 4.87019 4.93782 4.99681 5.09636 5.11376 5.16027 5.16733 5.21368 5.27864 5.31280 5.32190 5.38671 5.46071 5.47410 5.52262 5.56634 5.68326 5.75023 5.84366 5.90998 6.19227 6.27861 6.53981 6.73505 6.94673 7.46529 8.95082 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.004932 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.166465 B = 5675.566281 C = 6568.716821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.089 4.089 4 C -0.132 4.132 5 C -0.123 4.123 6 C -0.137 4.137 7 C -0.071 4.071 8 C 0.059 3.941 9 N -0.536 5.536 10 C 0.177 3.823 11 C -0.515 4.515 12 H 0.048 0.952 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.958 3.042 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.277 1.277 19 C 0.072 3.928 20 C -0.096 4.096 21 C -0.155 4.155 22 C -0.131 4.131 23 C -0.166 4.166 24 C -0.142 4.142 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.094 0.906 35 H -0.011 1.011 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.036 0.964 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 -12.356 -8.443 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.150 4.150 5 C -0.141 4.141 6 C -0.156 4.156 7 C -0.071 4.071 8 C -0.067 4.067 9 N -0.259 5.259 10 C 0.052 3.948 11 C -0.553 4.553 12 H 0.067 0.933 13 C -0.193 4.193 14 N -0.574 5.574 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.203 1.203 19 C -0.056 4.056 20 C -0.098 4.098 21 C -0.211 4.211 22 C -0.189 4.189 23 C -0.222 4.222 24 C -0.159 4.159 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.007 0.993 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.579 -12.283 -8.716 20.279 hybrid contribution 0.993 0.996 0.909 1.674 sum -12.586 -11.287 -7.807 18.622 Atomic orbital electron populations 1.21721 0.93920 1.02393 1.01933 1.20568 0.96764 0.91236 1.03377 1.20196 0.98687 0.97188 0.92832 1.21246 1.00659 0.94785 0.98296 1.21292 0.99506 0.95557 0.97707 1.21173 1.01136 1.00287 0.93009 1.19937 0.97519 0.95236 0.94445 1.21867 0.93516 0.97259 0.94106 1.62092 1.23199 1.04687 1.35884 1.20287 0.93666 0.88363 0.92491 1.21598 0.93418 1.14344 1.25978 0.93322 1.25737 1.03103 0.95061 0.95389 1.70066 1.36923 1.19341 1.31080 0.85506 0.80309 0.77981 0.77849 1.19414 1.20642 1.20316 1.22270 0.96420 0.92225 0.94719 1.21123 0.96853 0.95141 0.96681 1.22680 0.96223 1.01572 1.00655 1.21812 1.01128 0.99319 0.96601 1.22828 1.00428 0.97423 1.01537 1.21888 1.00068 0.94193 0.99800 0.92696 0.90998 0.93064 0.90117 0.90868 0.84289 0.84672 0.87461 0.93369 0.88856 0.99333 0.94980 0.92963 0.90751 0.93248 0.90693 0.91264 0.90890 0.94576 0.91661 0.91249 0.91107 0.92152 0.94468 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.90 71.98 0.71 -1.39 16 2 C -0.08 -1.44 6.06 29.85 0.18 -1.26 16 3 C -0.09 -2.14 5.13 -19.87 -0.10 -2.24 16 4 C -0.13 -3.10 9.70 22.27 0.22 -2.88 16 5 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 6 C -0.14 -4.40 9.67 22.27 0.22 -4.18 16 7 C -0.07 -2.33 5.30 -19.87 -0.11 -2.44 16 8 C 0.06 2.18 3.72 85.55 0.32 2.50 16 9 N -0.54 -23.31 4.46 -905.38 -4.04 -27.36 16 10 C 0.18 9.33 3.41 85.56 0.29 9.62 16 11 C -0.51 -29.98 8.94 25.60 0.23 -29.76 16 12 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 13 C 0.00 0.26 5.46 84.65 0.46 0.72 16 14 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 15 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 C 0.07 2.70 4.85 86.30 0.42 3.12 16 20 C -0.10 -2.97 0.77 -52.18 -0.04 -3.01 16 21 C -0.16 -3.72 6.40 71.98 0.46 -3.25 16 22 C -0.13 -3.61 8.19 71.98 0.59 -3.02 16 23 C -0.17 -5.97 6.20 71.98 0.45 -5.52 16 24 C -0.14 -3.96 7.32 22.27 0.16 -3.80 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 29 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 30 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.11 3.51 8.02 -2.91 -0.02 3.49 16 33 H 0.05 1.94 7.22 -2.39 -0.02 1.92 16 34 H 0.09 3.11 2.36 -2.39 -0.01 3.11 16 35 H -0.01 -0.66 7.38 -2.39 -0.02 -0.68 16 36 H 0.03 1.74 3.83 -2.39 -0.01 1.74 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.07 2.52 6.07 -2.39 -0.01 2.51 16 39 H 0.05 2.11 7.36 -2.39 -0.02 2.09 16 40 H 0.07 1.56 6.39 -2.39 -0.02 1.54 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.87 3.61 -2.39 -0.01 1.87 16 43 H 0.04 1.15 8.09 -2.39 -0.02 1.13 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 2.87 2.69 -2.39 -0.01 2.86 16 47 H 0.06 1.84 7.94 -2.39 -0.02 1.82 16 48 H 0.04 1.54 6.74 -2.38 -0.02 1.52 16 49 H 0.15 3.78 2.65 -2.91 -0.01 3.77 16 Total: -1.00 -65.48 357.28 3.88 -61.60 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.93 Total: 23.96 kcal Atomic # 6 Polarization: -54.47 SS G_CDS: 4.68 Total: -49.79 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -3.76 Total: -83.51 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.48 3.88 -61.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473178766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.436 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds