Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 H 1.09000 * 109.46752 * 302.91948 * 3 2 1 5 5 C 1.50697 * 109.46748 * 182.91949 * 3 2 1 6 6 C 1.38239 * 120.00218 * 306.44810 * 5 3 2 7 7 C 1.38231 * 120.00026 * 179.81461 * 6 5 3 8 8 C 1.38233 * 120.00297 * 0.39748 * 7 6 5 9 9 C 1.38237 * 119.99713 * 359.85798 * 8 7 6 10 10 C 1.38231 * 119.99942 * 126.73094 * 5 3 2 11 11 N 1.46895 * 109.47151 * 62.91987 * 3 2 1 12 12 C 1.46905 * 111.00230 * 62.07476 * 11 3 2 13 13 C 1.52997 * 109.47269 * 199.94191 * 12 11 3 14 14 C 1.46896 * 110.99987 * 186.03267 * 11 3 2 15 15 C 1.53002 * 109.47288 * 75.04312 * 14 11 3 16 16 H 1.09004 * 109.46924 * 304.38552 * 15 14 11 17 17 C 1.52995 * 109.47013 * 64.38816 * 15 14 11 18 18 C 1.52996 * 109.47078 * 184.38958 * 15 14 11 19 19 C 1.50702 * 109.47293 * 174.99982 * 18 15 14 20 20 H 1.08004 * 119.99893 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00019 * 179.97438 * 19 18 15 22 22 N 1.31505 * 120.00304 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99620 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47065 * 90.00125 * 23 21 19 25 25 H 1.48502 * 109.46804 * 210.00144 * 23 21 19 26 26 H 1.48496 * 109.47296 * 329.99820 * 23 21 19 27 27 H 1.08998 * 109.47281 * 185.03993 * 1 2 3 28 28 H 1.09003 * 109.47249 * 305.03871 * 1 2 3 29 29 H 1.09005 * 109.47233 * 65.03597 * 1 2 3 30 30 H 1.08998 * 109.47187 * 240.00074 * 2 1 3 31 31 H 1.08997 * 109.46699 * 120.00038 * 2 1 3 32 32 H 1.08006 * 119.99641 * 0.02562 * 6 5 3 33 33 H 1.08002 * 119.99844 * 180.23082 * 7 6 5 34 34 H 1.07994 * 120.00623 * 179.83539 * 8 7 6 35 35 H 1.08003 * 119.99918 * 179.97438 * 9 8 7 36 36 H 1.08002 * 120.00341 * 359.96712 * 10 5 3 37 37 H 1.08993 * 109.46843 * 319.94457 * 12 11 3 38 38 H 1.08999 * 109.46575 * 79.94272 * 12 11 3 39 39 H 1.09004 * 109.47714 * 304.42178 * 13 12 11 40 40 H 1.09002 * 109.47237 * 64.42014 * 13 12 11 41 41 H 1.08996 * 109.47381 * 184.41797 * 13 12 11 42 42 H 1.08996 * 109.46947 * 315.04041 * 14 11 3 43 43 H 1.09003 * 109.47383 * 195.03950 * 14 11 3 44 44 H 1.08998 * 109.47536 * 55.33048 * 17 15 14 45 45 H 1.09001 * 109.47233 * 295.32579 * 17 15 14 46 46 H 1.09006 * 109.46745 * 175.33417 * 17 15 14 47 47 H 1.09008 * 109.46993 * 294.99536 * 18 15 14 48 48 H 1.08997 * 109.47687 * 54.99644 * 18 15 14 49 49 H 0.97010 * 120.00276 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6345 1.9712 -0.8627 5 6 3.5452 1.4431 -0.0724 6 6 4.2816 0.7158 0.8441 7 6 5.6622 0.7133 0.7753 8 6 6.3068 1.4445 -0.2048 9 6 5.5706 2.1759 -1.1180 10 6 4.1898 2.1755 -1.0516 11 7 1.6088 2.1143 1.2331 12 6 2.1777 1.4571 2.4174 13 6 1.3551 1.8300 3.6522 14 6 1.9570 3.5412 1.2046 15 6 0.9984 4.2815 0.2698 16 1 1.0218 3.8175 -0.7163 17 6 -0.4218 4.2092 0.8341 18 6 1.4275 5.7456 0.1546 19 6 0.5595 6.4452 -0.8594 20 1 -0.2199 5.9000 -1.3709 21 6 0.7605 7.7813 -1.1341 22 7 1.7092 8.4453 -0.5109 23 14 -0.3150 8.6483 -2.3916 24 1 -1.5050 9.2221 -1.7135 25 1 0.4596 9.7378 -3.0382 26 1 -0.7545 7.6742 -3.4227 27 1 -0.3634 -1.0237 0.0903 28 1 -0.3634 0.5900 0.8414 29 1 -0.3634 0.4337 -0.9317 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.7780 0.1469 1.6118 33 1 6.2373 0.1421 1.4891 34 1 7.3855 1.4446 -0.2569 35 1 6.0743 2.7476 -1.8835 36 1 3.6147 2.7469 -1.7652 37 1 2.1555 0.3762 2.2788 38 1 3.2082 1.7847 2.5547 39 1 1.3120 2.9152 3.7461 40 1 0.3448 1.4339 3.5491 41 1 1.8222 1.4067 4.5414 42 1 2.9790 3.6586 0.8444 43 1 1.8762 3.9551 2.2098 44 1 -0.4285 4.5978 1.8524 45 1 -0.7586 3.1725 0.8386 46 1 -1.0903 4.8056 0.2131 47 1 1.3194 6.2332 1.1236 48 1 2.4691 5.7951 -0.1628 49 1 1.8509 9.3853 -0.7045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474361933.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = 9.290875 kcal Electronic energy + Delta-G solvation = -24360.317333 eV Core-core repulsion = 21286.541922 eV Total energy + Delta-G solvation = -3073.775410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18977 -37.61278 -34.98856 -33.21454 -32.11056 -31.09764 -30.71944 -29.51693 -26.86406 -25.99273 -24.84324 -23.46086 -22.38759 -21.90264 -21.34324 -19.83115 -18.61197 -16.60428 -16.37876 -15.86031 -15.49246 -15.09648 -14.64612 -14.52168 -13.98674 -13.72842 -13.67920 -13.36649 -13.28226 -12.64571 -12.54486 -12.43137 -12.13530 -11.86686 -11.62648 -11.55984 -11.53508 -11.36327 -11.11595 -10.95348 -10.81076 -10.76274 -10.65258 -10.57234 -10.40444 -10.19380 -10.11399 -9.51705 -9.06370 -8.90773 -8.79484 -8.63281 -8.29118 -7.91393 -5.93986 -3.94743 1.42558 1.49383 3.34838 3.41155 3.44312 3.84189 4.22784 4.51374 4.73875 4.89942 5.03829 5.11859 5.15672 5.24060 5.27540 5.41878 5.45860 5.52456 5.58961 5.66503 5.68661 5.73753 5.84529 5.91263 6.00589 6.02926 6.06915 6.11959 6.13248 6.17727 6.27073 6.30556 6.37389 6.47143 6.52885 6.56347 6.60340 6.63236 6.74351 6.80770 7.08455 7.09462 7.22288 7.29085 7.47635 7.52984 7.75345 7.91863 8.07013 8.51349 9.11908 9.68402 11.17522 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004831 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.427250 B = 5794.600316 C = 6638.629800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C 0.119 3.881 4 H 0.095 0.905 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.127 4.127 8 C -0.125 4.125 9 C -0.120 4.120 10 C -0.103 4.103 11 N -0.514 5.514 12 C 0.038 3.962 13 C -0.146 4.146 14 C 0.057 3.943 15 C -0.075 4.075 16 H 0.052 0.948 17 C -0.121 4.121 18 C 0.028 3.972 19 C -0.509 4.509 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.887 3.113 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.274 1.274 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.035 0.965 45 H 0.041 0.959 46 H 0.053 0.947 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -18.339 3.757 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C 0.010 3.990 4 H 0.113 0.887 5 C -0.109 4.109 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.121 4.121 11 N -0.236 5.236 12 C -0.089 4.089 13 C -0.204 4.204 14 C -0.070 4.070 15 C -0.094 4.094 16 H 0.071 0.929 17 C -0.179 4.179 18 C -0.010 4.010 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.199 1.199 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.073 -18.197 3.817 19.034 hybrid contribution 0.563 0.846 -0.730 1.251 sum 4.636 -17.351 3.087 18.223 Atomic orbital electron populations 1.21675 0.94923 1.00613 1.02978 1.21614 0.96875 0.94923 1.01393 1.20866 0.87677 0.95572 0.94855 0.88739 1.20705 0.97508 0.97038 0.95639 1.21278 0.93935 0.99586 0.98905 1.21082 0.94619 1.00040 0.98786 1.21101 0.99555 0.97876 0.95818 1.21171 0.94235 0.99147 0.99207 1.21221 0.94580 0.98071 0.98248 1.62432 1.57574 1.03153 1.00448 1.22419 0.96572 0.98801 0.91148 1.21780 1.00405 1.02100 0.96087 1.22377 0.97915 0.85976 1.00767 1.21135 0.94151 0.97725 0.96382 0.92924 1.21575 0.97065 0.99518 0.99692 1.19107 0.96198 0.88794 0.96873 1.21234 1.16666 0.94632 1.22254 0.92624 1.25008 0.95417 0.97708 0.96371 1.69968 1.31929 1.09243 1.42569 0.86667 0.80560 0.79408 0.81805 1.20747 1.21374 1.19929 0.93831 0.90974 0.92996 0.92108 0.92056 0.85834 0.86582 0.86560 0.86205 0.85759 0.90966 0.94469 0.92364 0.92242 0.93141 0.94771 0.91521 0.94535 0.93953 0.92821 0.96803 0.97073 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.85 37.16 0.37 -1.26 16 2 C -0.11 -1.25 4.95 -26.73 -0.13 -1.38 16 3 C 0.12 1.60 2.04 -68.87 -0.14 1.46 16 4 H 0.09 1.43 6.36 -51.93 -0.33 1.10 16 5 C -0.11 -1.45 3.65 -104.63 -0.38 -1.83 16 6 C -0.12 -1.45 7.10 -39.58 -0.28 -1.73 16 7 C -0.13 -1.48 10.05 -39.59 -0.40 -1.87 16 8 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 9 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 10 C -0.10 -1.47 9.23 -39.58 -0.37 -1.83 16 11 N -0.51 -7.30 3.14 -228.05 -0.72 -8.02 16 12 C 0.04 0.47 3.72 -3.82 -0.01 0.46 16 13 C -0.15 -1.72 10.07 37.16 0.37 -1.35 16 14 C 0.06 0.99 4.08 -3.83 -0.02 0.98 16 15 C -0.08 -1.53 2.38 -90.62 -0.22 -1.75 16 16 H 0.05 1.09 6.67 -51.93 -0.35 0.75 16 17 C -0.12 -2.35 8.90 37.16 0.33 -2.02 16 18 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 19 C -0.51 -14.29 8.34 -34.44 -0.29 -14.57 16 20 H 0.06 1.53 7.08 -52.48 -0.37 1.15 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 23 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.90 7.55 -51.93 -0.39 0.50 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 5.30 -51.93 -0.28 0.37 16 32 H 0.12 1.34 4.88 -52.48 -0.26 1.08 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 36 H 0.12 1.82 7.96 -52.49 -0.42 1.41 16 37 H 0.07 0.79 4.49 -51.93 -0.23 0.55 16 38 H 0.04 0.49 6.30 -51.93 -0.33 0.16 16 39 H 0.06 0.77 6.68 -51.93 -0.35 0.43 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.03 0.64 6.57 -51.93 -0.34 0.30 16 43 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 46 H 0.05 1.12 6.83 -51.93 -0.35 0.77 16 47 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -29.63 370.27 -10.12 -39.75 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.52 Total: 0.79 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -2.18 Total: -28.46 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.02 Total: -34.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.63 -10.12 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474361933.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.037 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds