Wall clock time and date at job start Tue Mar 31 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 H 1.09000 * 109.46752 * 302.91948 * 3 2 1 5 5 C 1.50697 * 109.46748 * 182.91949 * 3 2 1 6 6 C 1.38239 * 120.00218 * 306.44810 * 5 3 2 7 7 C 1.38231 * 120.00026 * 179.81461 * 6 5 3 8 8 C 1.38233 * 120.00297 * 0.39748 * 7 6 5 9 9 C 1.38237 * 119.99713 * 359.85798 * 8 7 6 10 10 C 1.38231 * 119.99942 * 126.73094 * 5 3 2 11 11 N 1.46895 * 109.47151 * 62.91987 * 3 2 1 12 12 C 1.46905 * 111.00230 * 62.07476 * 11 3 2 13 13 C 1.52997 * 109.47269 * 199.94191 * 12 11 3 14 14 C 1.46896 * 110.99987 * 186.03267 * 11 3 2 15 15 C 1.53002 * 109.47288 * 75.04312 * 14 11 3 16 16 H 1.09004 * 109.46924 * 304.38552 * 15 14 11 17 17 C 1.52995 * 109.47013 * 64.38816 * 15 14 11 18 18 C 1.52996 * 109.47078 * 184.38958 * 15 14 11 19 19 C 1.50702 * 109.47293 * 174.99982 * 18 15 14 20 20 H 1.08004 * 119.99893 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00019 * 179.97438 * 19 18 15 22 22 N 1.31505 * 120.00304 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99620 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47065 * 90.00125 * 23 21 19 25 25 H 1.48502 * 109.46804 * 210.00144 * 23 21 19 26 26 H 1.48496 * 109.47296 * 329.99820 * 23 21 19 27 27 H 1.08998 * 109.47281 * 185.03993 * 1 2 3 28 28 H 1.09003 * 109.47249 * 305.03871 * 1 2 3 29 29 H 1.09005 * 109.47233 * 65.03597 * 1 2 3 30 30 H 1.08998 * 109.47187 * 240.00074 * 2 1 3 31 31 H 1.08997 * 109.46699 * 120.00038 * 2 1 3 32 32 H 1.08006 * 119.99641 * 0.02562 * 6 5 3 33 33 H 1.08002 * 119.99844 * 180.23082 * 7 6 5 34 34 H 1.07994 * 120.00623 * 179.83539 * 8 7 6 35 35 H 1.08003 * 119.99918 * 179.97438 * 9 8 7 36 36 H 1.08002 * 120.00341 * 359.96712 * 10 5 3 37 37 H 1.08993 * 109.46843 * 319.94457 * 12 11 3 38 38 H 1.08999 * 109.46575 * 79.94272 * 12 11 3 39 39 H 1.09004 * 109.47714 * 304.42178 * 13 12 11 40 40 H 1.09002 * 109.47237 * 64.42014 * 13 12 11 41 41 H 1.08996 * 109.47381 * 184.41797 * 13 12 11 42 42 H 1.08996 * 109.46947 * 315.04041 * 14 11 3 43 43 H 1.09003 * 109.47383 * 195.03950 * 14 11 3 44 44 H 1.08998 * 109.47536 * 55.33048 * 17 15 14 45 45 H 1.09001 * 109.47233 * 295.32579 * 17 15 14 46 46 H 1.09006 * 109.46745 * 175.33417 * 17 15 14 47 47 H 1.09008 * 109.46993 * 294.99536 * 18 15 14 48 48 H 1.08997 * 109.47687 * 54.99644 * 18 15 14 49 49 H 0.97010 * 120.00276 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6345 1.9712 -0.8627 5 6 3.5452 1.4431 -0.0724 6 6 4.2816 0.7158 0.8441 7 6 5.6622 0.7133 0.7753 8 6 6.3068 1.4445 -0.2048 9 6 5.5706 2.1759 -1.1180 10 6 4.1898 2.1755 -1.0516 11 7 1.6088 2.1143 1.2331 12 6 2.1777 1.4571 2.4174 13 6 1.3551 1.8300 3.6522 14 6 1.9570 3.5412 1.2046 15 6 0.9984 4.2815 0.2698 16 1 1.0218 3.8175 -0.7163 17 6 -0.4218 4.2092 0.8341 18 6 1.4275 5.7456 0.1546 19 6 0.5595 6.4452 -0.8594 20 1 -0.2199 5.9000 -1.3709 21 6 0.7605 7.7813 -1.1341 22 7 1.7092 8.4453 -0.5109 23 14 -0.3150 8.6483 -2.3916 24 1 -1.5050 9.2221 -1.7135 25 1 0.4596 9.7378 -3.0382 26 1 -0.7545 7.6742 -3.4227 27 1 -0.3634 -1.0237 0.0903 28 1 -0.3634 0.5900 0.8414 29 1 -0.3634 0.4337 -0.9317 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.7780 0.1469 1.6118 33 1 6.2373 0.1421 1.4891 34 1 7.3855 1.4446 -0.2569 35 1 6.0743 2.7476 -1.8835 36 1 3.6147 2.7469 -1.7652 37 1 2.1555 0.3762 2.2788 38 1 3.2082 1.7847 2.5547 39 1 1.3120 2.9152 3.7461 40 1 0.3448 1.4339 3.5491 41 1 1.8222 1.4067 4.5414 42 1 2.9790 3.6586 0.8444 43 1 1.8762 3.9551 2.2098 44 1 -0.4285 4.5978 1.8524 45 1 -0.7586 3.1725 0.8386 46 1 -1.0903 4.8056 0.2131 47 1 1.3194 6.2332 1.1236 48 1 2.4691 5.7951 -0.1628 49 1 1.8509 9.3853 -0.7045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474361933.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:28 Heat of formation + Delta-G solvation = -4.424572 kcal Electronic energy + Delta-G solvation = -24360.912079 eV Core-core repulsion = 21286.541922 eV Total energy + Delta-G solvation = -3074.370157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26057 -38.75366 -36.66347 -34.56726 -33.86368 -32.11353 -31.69335 -30.72127 -28.80990 -27.31617 -26.10077 -24.96081 -23.78712 -22.86288 -22.37891 -21.23352 -20.01934 -18.51900 -17.53415 -17.00835 -16.81741 -16.38692 -16.24328 -15.64439 -15.37177 -15.15056 -14.64876 -14.55757 -14.34681 -14.26655 -13.97290 -13.60746 -13.43190 -13.24860 -12.99940 -12.81206 -12.75937 -12.64024 -12.57876 -12.47044 -12.22223 -12.20621 -11.98653 -11.86263 -11.75713 -11.59218 -11.35941 -11.26331 -11.00683 -10.81113 -10.53145 -9.79639 -9.62896 -9.11698 -8.17164 -6.26192 0.44175 0.50062 1.38911 1.40059 1.50892 2.41471 2.83010 3.08497 3.16144 3.72187 3.91940 4.03929 4.13090 4.18542 4.23186 4.29378 4.34953 4.40228 4.56405 4.58211 4.60628 4.64353 4.71048 4.77358 4.79898 4.90905 4.92512 4.98329 5.07039 5.10585 5.12859 5.15413 5.19595 5.25884 5.30144 5.37125 5.45448 5.48768 5.53287 5.56615 5.58171 5.62080 5.67012 5.70406 5.83154 5.89946 6.12650 6.19537 6.31191 6.35181 6.89690 7.41955 8.94991 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004831 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.427250 B = 5794.600316 C = 6638.629800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C 0.119 3.881 4 H 0.069 0.931 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.126 4.126 8 C -0.128 4.128 9 C -0.134 4.134 10 C -0.130 4.130 11 N -0.509 5.509 12 C 0.039 3.961 13 C -0.143 4.143 14 C 0.074 3.926 15 C -0.064 4.064 16 H 0.047 0.953 17 C -0.109 4.109 18 C 0.036 3.964 19 C -0.525 4.525 20 H 0.060 0.940 21 C -0.002 4.002 22 N -0.936 5.936 23 Si 0.959 3.041 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.067 0.933 46 H 0.034 0.966 47 H -0.014 1.014 48 H -0.021 1.021 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -20.615 4.353 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C 0.011 3.989 4 H 0.087 0.913 5 C -0.118 4.118 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.146 4.146 9 C -0.152 4.152 10 C -0.149 4.149 11 N -0.231 5.231 12 C -0.088 4.088 13 C -0.201 4.201 14 C -0.054 4.054 15 C -0.083 4.083 16 H 0.065 0.935 17 C -0.166 4.166 18 C -0.001 4.001 19 C -0.563 4.563 20 H 0.078 0.922 21 C -0.199 4.199 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.188 1.188 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.005 0.995 48 H -0.002 1.002 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.777 -20.494 4.413 21.302 hybrid contribution 0.720 1.534 -0.901 1.919 sum 4.497 -18.960 3.512 19.800 Atomic orbital electron populations 1.21643 0.94739 1.01535 1.01962 1.21573 0.96896 0.93085 1.02421 1.20844 0.87937 0.96681 0.93455 0.91278 1.20722 0.97492 0.97542 0.96055 1.21499 0.94452 0.99243 0.98690 1.21477 0.94611 0.99503 0.98816 1.21431 1.00852 0.97116 0.95239 1.21366 0.93895 0.99807 1.00116 1.21250 0.95400 0.99204 0.99049 1.62386 1.57766 1.01206 1.01782 1.22514 0.96214 0.99818 0.90269 1.21768 1.00788 1.00851 0.96665 1.22000 0.95899 0.88250 0.99253 1.20910 0.95678 0.94507 0.97169 0.93507 1.21448 0.95563 1.00689 0.98950 1.18972 0.94233 0.92153 0.94784 1.21606 1.16884 0.95202 1.22601 0.92215 1.25934 0.96791 0.98631 0.98502 1.70109 1.33689 1.09657 1.44247 0.85538 0.78682 0.78196 0.79209 1.19790 1.20941 1.18781 0.91896 0.92004 0.94012 0.91531 0.90451 0.83961 0.83600 0.84123 0.85589 0.87754 0.88600 0.95039 0.94425 0.91872 0.90923 0.96649 0.92008 0.94634 0.91433 0.94644 0.99531 1.00241 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.85 71.98 0.71 -2.18 16 2 C -0.10 -2.10 4.95 30.60 0.15 -1.95 16 3 C 0.12 3.17 2.04 44.17 0.09 3.26 16 4 H 0.07 2.18 6.36 -2.39 -0.02 2.17 16 5 C -0.12 -3.13 3.65 -19.87 -0.07 -3.20 16 6 C -0.12 -2.70 7.10 22.27 0.16 -2.55 16 7 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 8 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 9 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 10 C -0.13 -3.91 9.23 22.27 0.21 -3.70 16 11 N -0.51 -14.15 3.14 -875.40 -2.75 -16.90 16 12 C 0.04 0.88 3.72 86.30 0.32 1.20 16 13 C -0.14 -3.06 10.07 71.98 0.72 -2.34 16 14 C 0.07 2.67 4.08 86.30 0.35 3.02 16 15 C -0.06 -2.70 2.38 -10.80 -0.03 -2.73 16 16 H 0.05 2.04 6.67 -2.38 -0.02 2.02 16 17 C -0.11 -4.26 8.90 71.98 0.64 -3.62 16 18 C 0.04 1.97 4.45 29.85 0.13 2.10 16 19 C -0.52 -30.35 8.34 25.60 0.21 -30.14 16 20 H 0.06 3.33 7.08 -2.91 -0.02 3.31 16 21 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 22 N -0.94 -58.41 13.29 21.44 0.28 -58.13 16 23 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.40 7.55 -2.39 -0.02 1.38 16 29 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.35 5.30 -2.39 -0.01 1.33 16 32 H 0.14 2.58 4.88 -2.91 -0.01 2.57 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.10 3.41 7.96 -2.91 -0.02 3.38 16 37 H 0.10 1.74 4.49 -2.39 -0.01 1.72 16 38 H 0.03 0.77 6.30 -2.39 -0.02 0.75 16 39 H 0.04 0.96 6.68 -2.38 -0.02 0.94 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.02 0.61 6.57 -2.39 -0.02 0.59 16 43 H 0.06 2.28 6.47 -2.39 -0.02 2.27 16 44 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 45 H 0.07 2.28 7.87 -2.39 -0.02 2.26 16 46 H 0.03 1.49 6.83 -2.38 -0.02 1.47 16 47 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 48 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 49 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -65.86 370.27 5.19 -60.66 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.90 Total: 17.80 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 4.73 Total: -50.77 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -2.46 Total: -75.02 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -65.86 5.19 -60.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474361933.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.239 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds