Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46584 * 2 1 4 4 H 1.09004 * 109.47528 * 55.55196 * 3 2 1 5 5 C 1.50700 * 109.46498 * 175.54644 * 3 2 1 6 6 C 1.38239 * 120.00214 * 87.78143 * 5 3 2 7 7 C 1.38233 * 120.00058 * 179.78876 * 6 5 3 8 8 C 1.38235 * 120.00166 * 0.42949 * 7 6 5 9 9 C 1.38238 * 120.00098 * 359.82167 * 8 7 6 10 10 C 1.38238 * 120.00071 * 268.04479 * 5 3 2 11 11 N 1.46894 * 109.47154 * 295.54569 * 3 2 1 12 12 C 1.46895 * 111.00130 * 90.47826 * 11 3 2 13 13 C 1.52991 * 109.47412 * 72.42889 * 12 11 3 14 14 C 1.46904 * 111.00145 * 326.51962 * 11 3 2 15 15 C 1.52999 * 109.47264 * 199.06816 * 14 11 3 16 16 H 1.09003 * 109.46906 * 304.99778 * 15 14 11 17 17 C 1.52998 * 109.47354 * 64.99923 * 15 14 11 18 18 C 1.52996 * 109.46924 * 185.00045 * 15 14 11 19 19 C 1.50699 * 109.47076 * 174.99570 * 18 15 14 20 20 H 1.07999 * 119.99934 * 0.02562 * 19 18 15 21 21 C 1.37879 * 120.00057 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99945 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47315 * 60.00094 * 23 21 19 25 25 H 1.48505 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47659 * 300.00148 * 23 21 19 27 27 H 1.08996 * 109.47206 * 67.95925 * 1 2 3 28 28 H 1.09003 * 109.46902 * 187.96015 * 1 2 3 29 29 H 1.09002 * 109.47334 * 307.95565 * 1 2 3 30 30 H 1.08997 * 109.47322 * 239.99924 * 2 1 3 31 31 H 1.09000 * 109.46727 * 119.99752 * 2 1 3 32 32 H 1.08000 * 119.99523 * 359.97438 * 6 5 3 33 33 H 1.07997 * 120.00052 * 180.27250 * 7 6 5 34 34 H 1.08001 * 120.00439 * 179.83641 * 8 7 6 35 35 H 1.07992 * 120.00481 * 179.97438 * 9 8 7 36 36 H 1.08001 * 120.00221 * 359.97438 * 10 5 3 37 37 H 1.09002 * 109.47155 * 192.43358 * 12 11 3 38 38 H 1.09004 * 109.47229 * 312.42578 * 12 11 3 39 39 H 1.09002 * 109.47416 * 294.59768 * 13 12 11 40 40 H 1.09001 * 109.47469 * 54.59635 * 13 12 11 41 41 H 1.09005 * 109.47239 * 174.60050 * 13 12 11 42 42 H 1.09003 * 109.46557 * 79.06487 * 14 11 3 43 43 H 1.08996 * 109.47046 * 319.06751 * 14 11 3 44 44 H 1.09001 * 109.46743 * 59.99907 * 17 15 14 45 45 H 1.08994 * 109.47136 * 180.02562 * 17 15 14 46 46 H 1.08999 * 109.47118 * 300.00144 * 17 15 14 47 47 H 1.08998 * 109.47404 * 295.00259 * 18 15 14 48 48 H 1.09008 * 109.47292 * 54.99865 * 18 15 14 49 49 H 0.96997 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6130 1.9789 0.8475 5 6 3.5429 1.4440 0.1103 6 6 4.3198 1.3673 -1.0305 7 6 5.6985 1.3730 -0.9296 8 6 6.3002 1.4464 0.3128 9 6 5.5234 1.5178 1.4540 10 6 4.1447 1.5164 1.3527 11 7 1.6400 2.1032 -1.2495 12 6 0.3353 2.7620 -1.1026 13 6 0.4890 4.0088 -0.2295 14 6 1.6259 1.1505 -2.3677 15 6 1.6797 1.9165 -3.6911 16 1 0.8647 2.6395 -3.7258 17 6 3.0176 2.6503 -3.8016 18 6 1.5394 0.9336 -4.8551 19 6 1.4690 1.6978 -6.1521 20 1 1.5196 2.7766 -6.1466 21 6 1.3409 1.0197 -7.3458 22 7 1.2797 -0.2940 -7.3524 23 14 1.2543 1.9670 -8.9534 24 1 2.4949 2.7648 -9.1254 25 1 1.1192 1.0130 -10.0835 26 1 0.0805 2.8763 -8.9296 27 1 -0.3633 0.3856 -0.9525 28 1 -0.3633 -1.0178 0.1423 29 1 -0.3634 0.6321 0.8103 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8496 1.3060 -2.0008 33 1 6.3054 1.3176 -1.8211 34 1 7.3774 1.4482 0.3918 35 1 5.9935 1.5747 2.4246 36 1 3.5378 1.5724 2.2443 37 1 -0.0389 3.0501 -2.0849 38 1 -0.3682 2.0742 -0.6333 39 1 0.7708 3.7125 0.7809 40 1 1.2624 4.6527 -0.6482 41 1 -0.4569 4.5498 -0.1988 42 1 0.7122 0.5574 -2.3280 43 1 2.4906 0.4911 -2.2941 44 1 3.8325 1.9273 -3.7668 45 1 3.0557 3.1963 -4.7441 46 1 3.1175 3.3505 -2.9722 47 1 2.4010 0.2662 -4.8730 48 1 0.6288 0.3480 -4.7286 49 1 1.1892 -0.7710 -8.1922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474361939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = 18.067664 kcal Electronic energy + Delta-G solvation = -24336.215017 eV Core-core repulsion = 21262.820197 eV Total energy + Delta-G solvation = -3073.394820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09558 -38.00416 -35.01961 -32.92660 -32.15653 -31.10742 -30.73148 -29.50900 -27.01038 -26.28217 -24.83394 -23.18262 -22.31152 -21.94199 -21.53555 -19.63336 -18.88877 -16.84059 -16.38234 -15.71428 -15.45406 -14.86630 -14.83120 -14.39037 -14.16520 -13.99679 -13.44913 -13.21346 -13.10625 -12.83602 -12.54729 -12.43958 -12.31017 -11.88709 -11.83703 -11.53083 -11.42365 -11.35631 -11.26370 -11.07227 -10.87685 -10.74554 -10.62316 -10.53326 -10.41346 -10.25423 -10.08112 -9.45263 -9.09037 -8.92485 -8.73262 -8.51740 -8.30378 -7.83786 -5.95523 -3.96364 1.51805 1.60036 3.35664 3.40085 3.42688 3.91222 4.19463 4.50191 4.77808 4.97848 5.05928 5.10623 5.17776 5.23959 5.28695 5.36477 5.40588 5.43992 5.54643 5.62531 5.67637 5.70693 5.75587 5.83152 5.92040 5.96209 6.03316 6.11572 6.15146 6.16889 6.22161 6.28956 6.33146 6.37095 6.40287 6.60488 6.62170 6.73122 6.75468 6.82690 7.05150 7.17133 7.22653 7.26123 7.48797 7.50507 7.71988 7.87958 8.04841 8.49367 9.09858 9.66929 11.15918 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.004446 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.763584 B = 6295.876729 C = 7033.059576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C 0.120 3.880 4 H 0.083 0.917 5 C -0.063 4.063 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.129 4.129 9 C -0.127 4.127 10 C -0.122 4.122 11 N -0.523 5.523 12 C 0.035 3.965 13 C -0.144 4.144 14 C 0.047 3.953 15 C -0.080 4.080 16 H 0.056 0.944 17 C -0.125 4.125 18 C 0.028 3.972 19 C -0.511 4.511 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.148 3.138 18.757 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.190 4.190 3 C 0.011 3.989 4 H 0.101 0.899 5 C -0.064 4.064 6 C -0.124 4.124 7 C -0.140 4.140 8 C -0.147 4.147 9 C -0.145 4.145 10 C -0.141 4.141 11 N -0.246 5.246 12 C -0.092 4.092 13 C -0.202 4.202 14 C -0.079 4.079 15 C -0.099 4.099 16 H 0.074 0.926 17 C -0.182 4.182 18 C -0.010 4.010 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.465 3.356 18.528 19.145 hybrid contribution -0.558 -0.218 -0.764 0.971 sum 2.907 3.138 17.764 18.271 Atomic orbital electron populations 1.22073 0.95708 1.01617 1.02198 1.22247 0.96174 0.97450 1.03092 1.20660 0.91249 0.93280 0.93734 0.89917 1.19803 0.94938 0.98661 0.93006 1.21740 0.93372 0.97137 1.00157 1.21234 0.95233 1.00160 0.97389 1.21091 0.99411 1.01353 0.92894 1.20988 0.93806 1.01620 0.98130 1.20912 0.94689 1.01717 0.96781 1.62209 1.28509 1.30897 1.02995 1.22369 0.90248 0.95637 1.00960 1.21770 1.01403 0.97856 0.99142 1.22647 1.00444 0.93994 0.90834 1.21224 0.97505 0.98113 0.93020 0.92601 1.21666 0.96564 0.99436 1.00566 1.19118 0.96771 0.93788 0.91297 1.21193 1.49431 0.93067 0.91274 0.92670 1.25003 0.95594 0.94789 0.99061 1.69953 1.50828 1.06390 1.26519 0.86719 0.78579 0.79683 0.83369 1.20295 1.21414 1.20348 0.91468 0.92750 0.92894 0.90533 0.91867 0.83533 0.86314 0.86742 0.86725 0.86799 0.90234 0.93779 0.93471 0.91915 0.92864 0.94320 0.90838 0.94305 0.92795 0.93615 0.96729 0.97032 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.17 37.16 0.30 -1.50 16 2 C -0.15 -1.83 4.87 -26.73 -0.13 -1.96 16 3 C 0.12 1.50 2.03 -68.87 -0.14 1.36 16 4 H 0.08 0.97 6.22 -51.93 -0.32 0.65 16 5 C -0.06 -0.85 5.01 -104.62 -0.52 -1.37 16 6 C -0.11 -1.55 8.83 -39.58 -0.35 -1.90 16 7 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 8 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 9 C -0.13 -1.44 10.05 -39.58 -0.40 -1.83 16 10 C -0.12 -1.45 9.69 -39.58 -0.38 -1.83 16 11 N -0.52 -7.39 3.28 -228.05 -0.75 -8.14 16 12 C 0.04 0.46 5.06 -3.83 -0.02 0.44 16 13 C -0.14 -1.64 9.91 37.15 0.37 -1.27 16 14 C 0.05 0.79 2.14 -3.82 -0.01 0.78 16 15 C -0.08 -1.59 2.38 -90.62 -0.22 -1.81 16 16 H 0.06 1.15 6.61 -51.93 -0.34 0.80 16 17 C -0.13 -2.39 7.94 37.16 0.29 -2.10 16 18 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 19 C -0.51 -14.19 8.41 -34.44 -0.29 -14.48 16 20 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 23 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.07 0.86 4.46 -51.93 -0.23 0.63 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.54 7.78 -51.93 -0.40 0.13 16 30 H 0.08 1.06 5.92 -51.93 -0.31 0.75 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.15 2.34 2.33 -52.49 -0.12 2.22 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16 38 H 0.04 0.54 4.63 -51.93 -0.24 0.30 16 39 H 0.05 0.50 6.76 -51.93 -0.35 0.15 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.66 5.57 -51.93 -0.29 0.37 16 43 H 0.07 1.25 4.54 -51.93 -0.24 1.02 16 44 H 0.04 0.73 6.88 -51.93 -0.36 0.37 16 45 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 46 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -29.20 361.18 -10.13 -39.33 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.04 Total: 2.15 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -2.51 Total: -29.35 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.01 Total: -34.26 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.20 -10.13 -39.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474361939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.401 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds