Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46584 * 2 1 4 4 H 1.09004 * 109.47528 * 55.55196 * 3 2 1 5 5 C 1.50700 * 109.46498 * 175.54644 * 3 2 1 6 6 C 1.38239 * 120.00214 * 87.78143 * 5 3 2 7 7 C 1.38233 * 120.00058 * 179.78876 * 6 5 3 8 8 C 1.38235 * 120.00166 * 0.42949 * 7 6 5 9 9 C 1.38238 * 120.00098 * 359.82167 * 8 7 6 10 10 C 1.38238 * 120.00071 * 268.04479 * 5 3 2 11 11 N 1.46894 * 109.47154 * 295.54569 * 3 2 1 12 12 C 1.46895 * 111.00130 * 90.47826 * 11 3 2 13 13 C 1.52991 * 109.47412 * 72.42889 * 12 11 3 14 14 C 1.46904 * 111.00145 * 326.51962 * 11 3 2 15 15 C 1.52999 * 109.47264 * 199.06816 * 14 11 3 16 16 H 1.09003 * 109.46906 * 304.99778 * 15 14 11 17 17 C 1.52998 * 109.47354 * 64.99923 * 15 14 11 18 18 C 1.52996 * 109.46924 * 185.00045 * 15 14 11 19 19 C 1.50699 * 109.47076 * 174.99570 * 18 15 14 20 20 H 1.07999 * 119.99934 * 0.02562 * 19 18 15 21 21 C 1.37879 * 120.00057 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99945 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47315 * 60.00094 * 23 21 19 25 25 H 1.48505 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47659 * 300.00148 * 23 21 19 27 27 H 1.08996 * 109.47206 * 67.95925 * 1 2 3 28 28 H 1.09003 * 109.46902 * 187.96015 * 1 2 3 29 29 H 1.09002 * 109.47334 * 307.95565 * 1 2 3 30 30 H 1.08997 * 109.47322 * 239.99924 * 2 1 3 31 31 H 1.09000 * 109.46727 * 119.99752 * 2 1 3 32 32 H 1.08000 * 119.99523 * 359.97438 * 6 5 3 33 33 H 1.07997 * 120.00052 * 180.27250 * 7 6 5 34 34 H 1.08001 * 120.00439 * 179.83641 * 8 7 6 35 35 H 1.07992 * 120.00481 * 179.97438 * 9 8 7 36 36 H 1.08001 * 120.00221 * 359.97438 * 10 5 3 37 37 H 1.09002 * 109.47155 * 192.43358 * 12 11 3 38 38 H 1.09004 * 109.47229 * 312.42578 * 12 11 3 39 39 H 1.09002 * 109.47416 * 294.59768 * 13 12 11 40 40 H 1.09001 * 109.47469 * 54.59635 * 13 12 11 41 41 H 1.09005 * 109.47239 * 174.60050 * 13 12 11 42 42 H 1.09003 * 109.46557 * 79.06487 * 14 11 3 43 43 H 1.08996 * 109.47046 * 319.06751 * 14 11 3 44 44 H 1.09001 * 109.46743 * 59.99907 * 17 15 14 45 45 H 1.08994 * 109.47136 * 180.02562 * 17 15 14 46 46 H 1.08999 * 109.47118 * 300.00144 * 17 15 14 47 47 H 1.08998 * 109.47404 * 295.00259 * 18 15 14 48 48 H 1.09008 * 109.47292 * 54.99865 * 18 15 14 49 49 H 0.96997 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6130 1.9789 0.8475 5 6 3.5429 1.4440 0.1103 6 6 4.3198 1.3673 -1.0305 7 6 5.6985 1.3730 -0.9296 8 6 6.3002 1.4464 0.3128 9 6 5.5234 1.5178 1.4540 10 6 4.1447 1.5164 1.3527 11 7 1.6400 2.1032 -1.2495 12 6 0.3353 2.7620 -1.1026 13 6 0.4890 4.0088 -0.2295 14 6 1.6259 1.1505 -2.3677 15 6 1.6797 1.9165 -3.6911 16 1 0.8647 2.6395 -3.7258 17 6 3.0176 2.6503 -3.8016 18 6 1.5394 0.9336 -4.8551 19 6 1.4690 1.6978 -6.1521 20 1 1.5196 2.7766 -6.1466 21 6 1.3409 1.0197 -7.3458 22 7 1.2797 -0.2940 -7.3524 23 14 1.2543 1.9670 -8.9534 24 1 2.4949 2.7648 -9.1254 25 1 1.1192 1.0130 -10.0835 26 1 0.0805 2.8763 -8.9296 27 1 -0.3633 0.3856 -0.9525 28 1 -0.3633 -1.0178 0.1423 29 1 -0.3634 0.6321 0.8103 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8496 1.3060 -2.0008 33 1 6.3054 1.3176 -1.8211 34 1 7.3774 1.4482 0.3918 35 1 5.9935 1.5747 2.4246 36 1 3.5378 1.5724 2.2443 37 1 -0.0389 3.0501 -2.0849 38 1 -0.3682 2.0742 -0.6333 39 1 0.7708 3.7125 0.7809 40 1 1.2624 4.6527 -0.6482 41 1 -0.4569 4.5498 -0.1988 42 1 0.7122 0.5574 -2.3280 43 1 2.4906 0.4911 -2.2941 44 1 3.8325 1.9273 -3.7668 45 1 3.0557 3.1963 -4.7441 46 1 3.1175 3.3505 -2.9722 47 1 2.4010 0.2662 -4.8730 48 1 0.6288 0.3480 -4.7286 49 1 1.1892 -0.7710 -8.1922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474361939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = 4.507268 kcal Electronic energy + Delta-G solvation = -24336.803040 eV Core-core repulsion = 21262.820197 eV Total energy + Delta-G solvation = -3073.982843 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16828 -39.04944 -36.70752 -34.41278 -33.72727 -32.05930 -31.73238 -30.70206 -28.85124 -27.55563 -26.19442 -24.78770 -23.44167 -22.98520 -22.57389 -20.90553 -20.30997 -18.47035 -17.82427 -16.89613 -16.70001 -16.32949 -16.05871 -15.86503 -15.22613 -15.08073 -14.62454 -14.38024 -14.31124 -14.20781 -14.08888 -13.74818 -13.37272 -13.30865 -13.07367 -12.84069 -12.70866 -12.64015 -12.53375 -12.44657 -12.28884 -12.20709 -12.07236 -11.97357 -11.70825 -11.56951 -11.46245 -11.17167 -10.96061 -10.75118 -10.51269 -9.68554 -9.47743 -8.98408 -8.16250 -6.25029 0.57431 0.64575 1.39732 1.42224 1.49860 2.42303 2.90327 3.12966 3.17101 3.79963 3.98479 4.05503 4.09464 4.21935 4.28075 4.31213 4.33992 4.38564 4.48819 4.52185 4.58472 4.66067 4.73913 4.76360 4.79957 4.84343 4.92029 4.94299 4.99288 5.05230 5.08941 5.19795 5.21490 5.23871 5.27322 5.33412 5.38105 5.45364 5.49315 5.52018 5.58763 5.69081 5.78263 5.79232 5.87932 5.91627 6.20806 6.25380 6.35208 6.40595 6.90498 7.42991 8.95467 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.004446 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.763584 B = 6295.876729 C = 7033.059576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.124 3.876 4 H 0.102 0.898 5 C -0.075 4.075 6 C -0.131 4.131 7 C -0.139 4.139 8 C -0.132 4.132 9 C -0.126 4.126 10 C -0.123 4.123 11 N -0.525 5.525 12 C 0.032 3.968 13 C -0.136 4.136 14 C 0.066 3.934 15 C -0.070 4.070 16 H 0.050 0.950 17 C -0.110 4.110 18 C 0.036 3.964 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.000 4.000 22 N -0.934 5.934 23 Si 0.958 3.042 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.268 1.268 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.031 0.969 43 H 0.067 0.933 44 H 0.035 0.965 45 H 0.034 0.966 46 H 0.062 0.938 47 H -0.012 1.012 48 H -0.016 1.016 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 4.462 20.977 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.016 3.984 4 H 0.120 0.880 5 C -0.076 4.076 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.150 4.150 9 C -0.143 4.143 10 C -0.141 4.141 11 N -0.248 5.248 12 C -0.095 4.095 13 C -0.194 4.194 14 C -0.061 4.061 15 C -0.088 4.088 16 H 0.069 0.931 17 C -0.167 4.167 18 C -0.002 4.002 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.782 3.218 24 H -0.194 1.194 25 H -0.210 1.210 26 H -0.193 1.193 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.006 0.994 48 H 0.003 0.997 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.713 4.695 20.761 21.607 hybrid contribution -0.605 -0.663 -1.396 1.660 sum 3.108 4.031 19.365 20.023 Atomic orbital electron populations 1.22032 0.95037 1.02343 1.01826 1.22194 0.96687 0.97124 1.02604 1.20709 0.91177 0.93476 0.93068 0.88036 1.19921 0.95086 0.99186 0.93358 1.21662 0.94188 0.99187 0.99855 1.21368 0.94960 1.00946 0.98472 1.21382 1.00750 1.00505 0.92387 1.21378 0.93715 1.00070 0.99185 1.21212 0.95367 1.00713 0.96853 1.62126 1.29295 1.30245 1.03128 1.22432 0.89873 0.96692 1.00492 1.21706 1.01876 0.96620 0.99154 1.22276 0.99804 0.93680 0.90339 1.21012 0.97810 0.96987 0.93039 0.93112 1.21509 0.95861 0.99254 1.00111 1.18980 0.94121 0.94012 0.93054 1.21585 1.49055 0.93435 0.92470 0.92357 1.25903 0.95147 0.95701 1.02943 1.70091 1.51814 1.08091 1.27518 0.85615 0.79074 0.78388 0.78674 1.19363 1.20984 1.19292 0.93324 0.92170 0.91011 0.92968 0.90384 0.85742 0.86353 0.84574 0.83787 0.84298 0.92307 0.92583 0.92071 0.93152 0.91343 0.95096 0.91477 0.94557 0.94659 0.91896 0.99403 0.99734 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.17 71.99 0.59 -2.74 16 2 C -0.15 -3.43 4.87 30.60 0.15 -3.28 16 3 C 0.12 2.93 2.03 44.17 0.09 3.02 16 4 H 0.10 2.04 6.22 -2.39 -0.01 2.03 16 5 C -0.07 -1.89 5.01 -19.86 -0.10 -1.99 16 6 C -0.13 -3.84 8.83 22.27 0.20 -3.64 16 7 C -0.14 -3.69 10.05 22.27 0.22 -3.46 16 8 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 9 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 10 C -0.12 -2.55 9.69 22.27 0.22 -2.33 16 11 N -0.52 -14.67 3.28 -875.40 -2.87 -17.54 16 12 C 0.03 0.82 5.06 86.30 0.44 1.26 16 13 C -0.14 -2.80 9.91 71.98 0.71 -2.09 16 14 C 0.07 2.29 2.14 86.30 0.18 2.48 16 15 C -0.07 -2.90 2.38 -10.80 -0.03 -2.92 16 16 H 0.05 2.16 6.61 -2.39 -0.02 2.14 16 17 C -0.11 -4.35 7.94 71.98 0.57 -3.78 16 18 C 0.04 1.91 4.45 29.85 0.13 2.04 16 19 C -0.53 -30.19 8.41 25.60 0.22 -29.98 16 20 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 21 C 0.00 0.02 5.46 84.66 0.46 0.48 16 22 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 23 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H 0.05 1.23 4.46 -2.39 -0.01 1.22 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.26 7.78 -2.39 -0.02 1.24 16 30 H 0.05 1.47 5.92 -2.39 -0.01 1.46 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.12 4.14 2.33 -2.91 -0.01 4.14 16 33 H 0.12 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.06 1.73 6.43 -2.39 -0.02 1.71 16 38 H 0.06 1.29 4.63 -2.38 -0.01 1.28 16 39 H 0.06 1.09 6.76 -2.39 -0.02 1.07 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.03 1.11 5.57 -2.39 -0.01 1.10 16 43 H 0.07 2.43 4.54 -2.39 -0.01 2.42 16 44 H 0.04 1.42 6.88 -2.39 -0.02 1.41 16 45 H 0.03 1.49 6.95 -2.39 -0.02 1.47 16 46 H 0.06 2.24 7.75 -2.39 -0.02 2.23 16 47 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 48 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 49 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -64.51 361.18 4.86 -59.66 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.92 Total: 19.94 kcal Atomic # 6 Polarization: -56.28 SS G_CDS: 4.50 Total: -51.78 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.59 Total: -74.85 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.51 4.86 -59.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474361939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.163 kcal (2) G-P(sol) polarization free energy of solvation -64.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds