Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 H 1.08997 * 109.47391 * 66.81504 * 3 2 1 5 5 C 1.50699 * 109.46915 * 186.81636 * 3 2 1 6 6 C 1.38234 * 120.00071 * 236.53000 * 5 3 2 7 7 C 1.38239 * 120.00330 * 180.02562 * 6 5 3 8 8 C 1.38231 * 119.99929 * 359.95721 * 7 6 5 9 9 C 1.38240 * 119.99888 * 359.97438 * 8 7 6 10 10 C 1.38236 * 120.00174 * 0.07487 * 9 8 7 11 11 N 1.46897 * 109.46899 * 306.81443 * 3 2 1 12 12 C 1.46902 * 110.99987 * 193.82529 * 11 3 2 13 13 C 1.53005 * 109.47025 * 286.71821 * 12 11 3 14 14 C 1.46901 * 111.00185 * 317.77385 * 11 3 2 15 15 C 1.53006 * 109.47209 * 166.50763 * 14 11 3 16 16 H 1.09006 * 109.46670 * 55.06181 * 15 14 11 17 17 C 1.53000 * 109.47114 * 295.06421 * 15 14 11 18 18 C 1.52999 * 109.47263 * 175.06301 * 15 14 11 19 19 C 1.50695 * 109.46957 * 185.00124 * 18 15 14 20 20 H 1.08002 * 120.00469 * 359.97438 * 19 18 15 21 21 C 1.37880 * 119.99638 * 180.02562 * 19 18 15 22 22 N 1.31515 * 120.00486 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46973 * 90.00145 * 23 21 19 25 25 H 1.48497 * 109.47130 * 209.99901 * 23 21 19 26 26 H 1.48504 * 109.47320 * 330.00066 * 23 21 19 27 27 H 1.08996 * 109.47479 * 308.23692 * 1 2 3 28 28 H 1.09000 * 109.47022 * 68.23962 * 1 2 3 29 29 H 1.09004 * 109.47229 * 188.23511 * 1 2 3 30 30 H 1.09006 * 109.47246 * 239.99649 * 2 1 3 31 31 H 1.09001 * 109.47144 * 119.99566 * 2 1 3 32 32 H 1.08006 * 119.99948 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.00068 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.99796 * 179.72359 * 8 7 6 35 35 H 1.07997 * 119.99999 * 179.97438 * 9 8 7 36 36 H 1.07997 * 120.00239 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47622 * 46.71522 * 12 11 3 38 38 H 1.09003 * 109.47317 * 166.72005 * 12 11 3 39 39 H 1.09001 * 109.46900 * 65.20492 * 13 12 11 40 40 H 1.09000 * 109.47241 * 185.20547 * 13 12 11 41 41 H 1.09007 * 109.47057 * 305.20790 * 13 12 11 42 42 H 1.08994 * 109.47647 * 286.51068 * 14 11 3 43 43 H 1.08997 * 109.46982 * 46.51470 * 14 11 3 44 44 H 1.09008 * 109.46781 * 60.00024 * 17 15 14 45 45 H 1.09004 * 109.47227 * 179.97438 * 17 15 14 46 46 H 1.08995 * 109.47218 * 300.00197 * 17 15 14 47 47 H 1.09000 * 109.47137 * 305.00116 * 18 15 14 48 48 H 1.09004 * 109.46754 * 65.00278 * 18 15 14 49 49 H 0.96990 * 120.00317 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7797 1.9200 0.9446 5 6 3.5375 1.4458 -0.1686 6 6 4.3376 2.0675 0.7717 7 6 5.7113 2.0710 0.6168 8 6 6.2849 1.4520 -0.4780 9 6 5.4849 0.8291 -1.4177 10 6 4.1112 0.8264 -1.2633 11 7 1.4207 2.1808 -1.1088 12 6 2.1155 3.4530 -1.3472 13 6 1.7727 4.4387 -0.2283 14 6 1.3841 1.3643 -2.3295 15 6 0.4496 2.0157 -3.3509 16 1 0.7639 3.0446 -3.5265 17 6 -0.9823 2.0048 -2.8119 18 6 0.5058 1.2340 -4.6649 19 6 -0.3181 1.9443 -5.7077 20 1 -0.8310 2.8615 -5.4581 21 6 -0.4181 1.4229 -6.9801 22 7 0.2052 0.3053 -7.2837 23 14 -1.4400 2.3030 -8.2726 24 1 -0.5848 3.2714 -9.0048 25 1 -1.9924 1.3094 -9.2280 26 1 -2.5553 3.0281 -7.6125 27 1 -0.3634 0.6360 0.8071 28 1 -0.3633 0.3810 -0.9544 29 1 -0.3634 -1.0171 0.1472 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8894 2.5512 1.6271 33 1 6.3363 2.5571 1.3513 34 1 7.3578 1.4586 -0.6014 35 1 5.9330 0.3458 -2.2732 36 1 3.4862 0.3401 -1.9976 37 1 3.1918 3.2818 -1.3634 38 1 1.7988 3.8660 -2.3049 39 1 2.1711 4.0688 0.7164 40 1 2.2127 5.4104 -0.4527 41 1 0.6900 4.5391 -0.1516 42 1 2.3875 1.2926 -2.7490 43 1 1.0190 0.3661 -2.0880 44 1 -1.0223 2.5619 -1.8757 45 1 -1.6479 2.4693 -3.5394 46 1 -1.2965 0.9761 -2.6362 47 1 1.5398 1.1659 -5.0032 48 1 0.1079 0.2313 -4.5084 49 1 0.1346 -0.0617 -8.1787 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474361940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = 15.079071 kcal Electronic energy + Delta-G solvation = -24381.800998 eV Core-core repulsion = 21308.276582 eV Total energy + Delta-G solvation = -3073.524415 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.33238 -37.78262 -34.84620 -33.32726 -32.19661 -30.97440 -30.76635 -29.42986 -27.02305 -26.18111 -24.67356 -23.06154 -22.54895 -21.91836 -21.83452 -19.48188 -18.78359 -16.82982 -16.29012 -15.78580 -15.43915 -15.20019 -14.77952 -14.43507 -14.36479 -13.97620 -13.60549 -13.21028 -12.95093 -12.72267 -12.62312 -12.39888 -12.17035 -11.85079 -11.77480 -11.69120 -11.37145 -11.27165 -11.05039 -11.03831 -10.90251 -10.70749 -10.66803 -10.50717 -10.32428 -10.20066 -10.12069 -9.44367 -9.08393 -8.92489 -8.89473 -8.67724 -8.29938 -7.88073 -5.95142 -3.95787 1.34497 1.40497 3.34432 3.40865 3.44284 3.76168 4.26909 4.50810 4.70908 4.84481 4.98582 5.08781 5.12769 5.24836 5.32702 5.40940 5.46485 5.50262 5.54100 5.61347 5.70438 5.78805 5.82131 5.91439 5.96424 6.02417 6.04644 6.10320 6.15340 6.22254 6.27170 6.33880 6.40218 6.44559 6.46646 6.52703 6.56979 6.66584 6.70581 6.76121 7.00676 7.08191 7.21611 7.27450 7.48928 7.53213 7.73051 7.89558 8.05517 8.50274 9.10663 9.67511 11.16376 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.004236 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.842003 B = 6608.385249 C = 7026.988303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.121 3.879 4 H 0.084 0.916 5 C -0.100 4.100 6 C -0.114 4.114 7 C -0.123 4.123 8 C -0.127 4.127 9 C -0.118 4.118 10 C -0.116 4.116 11 N -0.514 5.514 12 C 0.041 3.959 13 C -0.141 4.141 14 C 0.038 3.962 15 C -0.079 4.079 16 H 0.054 0.946 17 C -0.123 4.123 18 C 0.028 3.972 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.039 0.961 47 H 0.011 0.989 48 H 0.015 0.985 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 2.205 17.700 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.013 3.987 4 H 0.102 0.898 5 C -0.102 4.102 6 C -0.133 4.133 7 C -0.142 4.142 8 C -0.145 4.145 9 C -0.136 4.136 10 C -0.134 4.134 11 N -0.236 5.236 12 C -0.087 4.087 13 C -0.198 4.198 14 C -0.089 4.089 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.180 4.180 18 C -0.010 4.010 19 C -0.549 4.549 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.636 2.195 17.688 19.391 hybrid contribution 0.521 0.256 -1.108 1.251 sum 8.157 2.451 16.580 18.640 Atomic orbital electron populations 1.21889 0.94593 1.00604 1.03980 1.21719 0.97210 0.94794 1.01932 1.20884 0.86532 0.94941 0.96373 0.89762 1.20686 0.97381 0.97259 0.94902 1.21036 0.93542 0.99742 0.98977 1.21087 0.94978 1.00009 0.98082 1.21110 0.99581 0.98802 0.95014 1.21195 0.93902 0.99484 0.99031 1.21425 0.95094 0.99239 0.97669 1.62507 1.50902 1.04003 1.06198 1.22191 0.96538 0.90354 0.99598 1.21705 1.02053 0.97918 0.98156 1.22780 0.98923 0.97752 0.89453 1.21217 0.94107 0.99361 0.95107 0.92769 1.21614 0.96856 1.00205 0.99314 1.19114 0.96711 0.95179 0.89951 1.21237 1.29642 1.08670 0.95320 0.92638 1.25005 0.95913 0.95019 0.98536 1.69961 1.43492 1.19970 1.20294 0.86661 0.80635 0.79409 0.81697 1.20817 1.21338 1.19893 0.92927 0.90104 0.93665 0.91443 0.92114 0.86463 0.86507 0.86502 0.86168 0.85151 0.94378 0.90320 0.93510 0.93065 0.92002 0.94730 0.89936 0.93783 0.92949 0.94201 0.97112 0.96685 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.23 37.16 0.34 -1.58 16 2 C -0.12 -1.45 4.77 -26.73 -0.13 -1.58 16 3 C 0.12 1.51 2.13 -68.87 -0.15 1.36 16 4 H 0.08 1.00 7.23 -51.93 -0.38 0.62 16 5 C -0.10 -1.25 2.85 -104.62 -0.30 -1.55 16 6 C -0.11 -1.29 9.57 -39.58 -0.38 -1.66 16 7 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 8 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 9 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 10 C -0.12 -1.56 7.68 -39.58 -0.30 -1.86 16 11 N -0.51 -7.30 3.46 -228.03 -0.79 -8.09 16 12 C 0.04 0.58 5.28 -3.82 -0.02 0.56 16 13 C -0.14 -1.67 9.90 37.16 0.37 -1.30 16 14 C 0.04 0.63 2.32 -3.82 -0.01 0.62 16 15 C -0.08 -1.59 2.33 -90.62 -0.21 -1.80 16 16 H 0.05 1.13 6.27 -51.93 -0.33 0.81 16 17 C -0.12 -2.34 8.04 37.16 0.30 -2.04 16 18 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 19 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 20 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 23 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.08 1.17 4.00 -51.93 -0.21 0.97 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.89 5.45 -51.93 -0.28 0.61 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.13 7.95 -52.48 -0.42 0.71 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.88 4.84 -52.49 -0.25 1.62 16 37 H 0.04 0.56 5.89 -51.93 -0.31 0.25 16 38 H 0.08 1.25 6.06 -51.93 -0.31 0.93 16 39 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.03 0.61 5.34 -51.93 -0.28 0.33 16 43 H 0.08 1.38 4.19 -51.93 -0.22 1.16 16 44 H 0.04 0.75 7.75 -51.92 -0.40 0.35 16 45 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 46 H 0.04 0.74 7.14 -51.93 -0.37 0.37 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -29.24 363.09 -10.02 -39.26 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.23 Total: 1.48 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -2.19 Total: -28.65 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.05 Total: -34.31 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.24 -10.02 -39.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474361940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.335 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds