Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 H 1.08997 * 109.47391 * 66.81504 * 3 2 1 5 5 C 1.50699 * 109.46915 * 186.81636 * 3 2 1 6 6 C 1.38234 * 120.00071 * 236.53000 * 5 3 2 7 7 C 1.38239 * 120.00330 * 180.02562 * 6 5 3 8 8 C 1.38231 * 119.99929 * 359.95721 * 7 6 5 9 9 C 1.38240 * 119.99888 * 359.97438 * 8 7 6 10 10 C 1.38236 * 120.00174 * 0.07487 * 9 8 7 11 11 N 1.46897 * 109.46899 * 306.81443 * 3 2 1 12 12 C 1.46902 * 110.99987 * 193.82529 * 11 3 2 13 13 C 1.53005 * 109.47025 * 286.71821 * 12 11 3 14 14 C 1.46901 * 111.00185 * 317.77385 * 11 3 2 15 15 C 1.53006 * 109.47209 * 166.50763 * 14 11 3 16 16 H 1.09006 * 109.46670 * 55.06181 * 15 14 11 17 17 C 1.53000 * 109.47114 * 295.06421 * 15 14 11 18 18 C 1.52999 * 109.47263 * 175.06301 * 15 14 11 19 19 C 1.50695 * 109.46957 * 185.00124 * 18 15 14 20 20 H 1.08002 * 120.00469 * 359.97438 * 19 18 15 21 21 C 1.37880 * 119.99638 * 180.02562 * 19 18 15 22 22 N 1.31515 * 120.00486 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46973 * 90.00145 * 23 21 19 25 25 H 1.48497 * 109.47130 * 209.99901 * 23 21 19 26 26 H 1.48504 * 109.47320 * 330.00066 * 23 21 19 27 27 H 1.08996 * 109.47479 * 308.23692 * 1 2 3 28 28 H 1.09000 * 109.47022 * 68.23962 * 1 2 3 29 29 H 1.09004 * 109.47229 * 188.23511 * 1 2 3 30 30 H 1.09006 * 109.47246 * 239.99649 * 2 1 3 31 31 H 1.09001 * 109.47144 * 119.99566 * 2 1 3 32 32 H 1.08006 * 119.99948 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.00068 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.99796 * 179.72359 * 8 7 6 35 35 H 1.07997 * 119.99999 * 179.97438 * 9 8 7 36 36 H 1.07997 * 120.00239 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47622 * 46.71522 * 12 11 3 38 38 H 1.09003 * 109.47317 * 166.72005 * 12 11 3 39 39 H 1.09001 * 109.46900 * 65.20492 * 13 12 11 40 40 H 1.09000 * 109.47241 * 185.20547 * 13 12 11 41 41 H 1.09007 * 109.47057 * 305.20790 * 13 12 11 42 42 H 1.08994 * 109.47647 * 286.51068 * 14 11 3 43 43 H 1.08997 * 109.46982 * 46.51470 * 14 11 3 44 44 H 1.09008 * 109.46781 * 60.00024 * 17 15 14 45 45 H 1.09004 * 109.47227 * 179.97438 * 17 15 14 46 46 H 1.08995 * 109.47218 * 300.00197 * 17 15 14 47 47 H 1.09000 * 109.47137 * 305.00116 * 18 15 14 48 48 H 1.09004 * 109.46754 * 65.00278 * 18 15 14 49 49 H 0.96990 * 120.00317 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7797 1.9200 0.9446 5 6 3.5375 1.4458 -0.1686 6 6 4.3376 2.0675 0.7717 7 6 5.7113 2.0710 0.6168 8 6 6.2849 1.4520 -0.4780 9 6 5.4849 0.8291 -1.4177 10 6 4.1112 0.8264 -1.2633 11 7 1.4207 2.1808 -1.1088 12 6 2.1155 3.4530 -1.3472 13 6 1.7727 4.4387 -0.2283 14 6 1.3841 1.3643 -2.3295 15 6 0.4496 2.0157 -3.3509 16 1 0.7639 3.0446 -3.5265 17 6 -0.9823 2.0048 -2.8119 18 6 0.5058 1.2340 -4.6649 19 6 -0.3181 1.9443 -5.7077 20 1 -0.8310 2.8615 -5.4581 21 6 -0.4181 1.4229 -6.9801 22 7 0.2052 0.3053 -7.2837 23 14 -1.4400 2.3030 -8.2726 24 1 -0.5848 3.2714 -9.0048 25 1 -1.9924 1.3094 -9.2280 26 1 -2.5553 3.0281 -7.6125 27 1 -0.3634 0.6360 0.8071 28 1 -0.3633 0.3810 -0.9544 29 1 -0.3634 -1.0171 0.1472 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8894 2.5512 1.6271 33 1 6.3363 2.5571 1.3513 34 1 7.3578 1.4586 -0.6014 35 1 5.9330 0.3458 -2.2732 36 1 3.4862 0.3401 -1.9976 37 1 3.1918 3.2818 -1.3634 38 1 1.7988 3.8660 -2.3049 39 1 2.1711 4.0688 0.7164 40 1 2.2127 5.4104 -0.4527 41 1 0.6900 4.5391 -0.1516 42 1 2.3875 1.2926 -2.7490 43 1 1.0190 0.3661 -2.0880 44 1 -1.0223 2.5619 -1.8757 45 1 -1.6479 2.4693 -3.5394 46 1 -1.2965 0.9761 -2.6362 47 1 1.5398 1.1659 -5.0032 48 1 0.1079 0.2313 -4.5084 49 1 0.1346 -0.0617 -8.1787 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474361940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = 1.357951 kcal Electronic energy + Delta-G solvation = -24382.395990 eV Core-core repulsion = 21308.276582 eV Total energy + Delta-G solvation = -3074.119408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37199 -38.87614 -36.52206 -34.50235 -34.10099 -31.94316 -31.71279 -30.62970 -28.86787 -27.49265 -26.07116 -24.62419 -23.57639 -23.13048 -22.81204 -20.84947 -20.09944 -18.49047 -17.71107 -17.02969 -16.61661 -16.31348 -16.17832 -16.01894 -15.49635 -15.10590 -14.65659 -14.54201 -14.31816 -14.14869 -13.88987 -13.63994 -13.35308 -13.21319 -13.18812 -12.82339 -12.72195 -12.64232 -12.51700 -12.34950 -12.26265 -12.13907 -12.04971 -11.82093 -11.75352 -11.66002 -11.36437 -11.17939 -10.92880 -10.79684 -10.51897 -9.81270 -9.60430 -9.08245 -8.16706 -6.25518 0.44294 0.50248 1.39468 1.40289 1.51437 2.42046 2.82836 3.14418 3.16702 3.77163 3.88659 4.04821 4.13027 4.15603 4.25657 4.29048 4.35905 4.40425 4.55210 4.57796 4.61645 4.63965 4.67942 4.77451 4.82934 4.91472 4.94059 4.99339 5.02404 5.10241 5.13532 5.17349 5.19871 5.23868 5.29543 5.35395 5.44807 5.50024 5.51156 5.57895 5.59289 5.62966 5.68365 5.71418 5.85579 5.91431 6.12915 6.20708 6.32544 6.35982 6.90334 7.42616 8.95278 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.004236 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.842003 B = 6608.385249 C = 7026.988303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.124 3.876 4 H 0.103 0.897 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.122 4.122 8 C -0.129 4.129 9 C -0.135 4.135 10 C -0.137 4.137 11 N -0.509 5.509 12 C 0.042 3.958 13 C -0.132 4.132 14 C 0.055 3.945 15 C -0.070 4.070 16 H 0.046 0.954 17 C -0.110 4.110 18 C 0.036 3.964 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.000 4.000 22 N -0.935 5.935 23 Si 0.958 3.042 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.263 1.263 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.032 0.968 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.032 0.968 46 H 0.038 0.962 47 H -0.020 1.020 48 H -0.010 1.010 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 3.728 19.915 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.121 0.879 5 C -0.110 4.110 6 C -0.134 4.134 7 C -0.140 4.140 8 C -0.147 4.147 9 C -0.153 4.153 10 C -0.155 4.155 11 N -0.231 5.231 12 C -0.086 4.086 13 C -0.189 4.189 14 C -0.072 4.072 15 C -0.089 4.089 16 H 0.064 0.936 17 C -0.167 4.167 18 C -0.002 4.002 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.187 1.187 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.051 0.949 46 H 0.058 0.942 47 H -0.002 1.002 48 H 0.008 0.992 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.766 3.727 19.920 21.703 hybrid contribution 0.563 -0.251 -1.771 1.875 sum 8.329 3.476 18.149 20.269 Atomic orbital electron populations 1.21835 0.94650 1.01193 1.03043 1.21697 0.97054 0.94795 1.01895 1.20941 0.86659 0.94859 0.95896 0.87894 1.20659 0.97370 0.97832 0.95102 1.21310 0.93878 0.99107 0.99064 1.21460 0.95149 0.99186 0.98191 1.21411 1.00656 0.98002 0.94627 1.21357 0.93775 1.00281 0.99902 1.21364 0.95570 1.00458 0.98142 1.62483 1.51524 1.03896 1.05228 1.22180 0.96099 0.90646 0.99639 1.21638 1.02020 0.97625 0.97657 1.22440 0.97123 0.97768 0.89915 1.21016 0.96026 0.98141 0.93684 0.93556 1.21481 0.95212 1.00347 0.99640 1.18979 0.94208 0.94516 0.92455 1.21622 1.29775 1.08869 0.96213 0.92330 1.25916 0.97122 0.95755 1.00967 1.70098 1.44950 1.21568 1.20966 0.85549 0.79140 0.78290 0.78708 1.20031 1.20854 1.18742 0.91755 0.92383 0.92978 0.93218 0.90425 0.84220 0.83639 0.84318 0.86005 0.87384 0.94955 0.92674 0.91932 0.92019 0.92246 0.96150 0.89964 0.91408 0.94851 0.94247 1.00170 0.99184 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.23 71.98 0.66 -2.92 16 2 C -0.12 -2.75 4.77 30.59 0.15 -2.60 16 3 C 0.12 2.91 2.13 44.17 0.09 3.00 16 4 H 0.10 2.08 7.23 -2.39 -0.02 2.07 16 5 C -0.11 -2.57 2.85 -19.87 -0.06 -2.62 16 6 C -0.12 -2.26 9.57 22.27 0.21 -2.04 16 7 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 8 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 9 C -0.14 -3.34 10.05 22.27 0.22 -3.11 16 10 C -0.14 -3.76 7.68 22.27 0.17 -3.59 16 11 N -0.51 -14.21 3.46 -875.37 -3.03 -17.24 16 12 C 0.04 1.16 5.28 86.30 0.46 1.62 16 13 C -0.13 -2.80 9.90 71.98 0.71 -2.09 16 14 C 0.05 1.92 2.32 86.31 0.20 2.12 16 15 C -0.07 -2.92 2.33 -10.79 -0.03 -2.95 16 16 H 0.05 2.01 6.27 -2.38 -0.01 1.99 16 17 C -0.11 -4.22 8.04 71.98 0.58 -3.64 16 18 C 0.04 1.93 4.45 29.85 0.13 2.06 16 19 C -0.53 -30.30 8.41 25.60 0.22 -30.09 16 20 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 21 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 22 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 23 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 27 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.06 1.66 4.00 -2.39 -0.01 1.65 16 29 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.05 1.35 5.45 -2.38 -0.01 1.33 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.14 2.09 7.95 -2.91 -0.02 2.07 16 33 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.11 3.38 4.84 -2.91 -0.01 3.36 16 37 H 0.03 0.93 5.89 -2.39 -0.01 0.92 16 38 H 0.05 1.77 6.06 -2.39 -0.01 1.76 16 39 H 0.06 1.14 7.36 -2.39 -0.02 1.12 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.02 0.77 5.34 -2.39 -0.01 0.76 16 43 H 0.08 2.88 4.19 -2.39 -0.01 2.87 16 44 H 0.07 2.27 7.75 -2.38 -0.02 2.25 16 45 H 0.03 1.38 6.95 -2.39 -0.02 1.36 16 46 H 0.04 1.49 7.14 -2.39 -0.02 1.48 16 47 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 48 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 49 H 0.26 15.23 8.31 -92.72 -0.77 14.46 16 Total: -1.00 -64.57 363.09 4.82 -59.74 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.91 Total: 18.69 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 4.64 Total: -50.79 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -2.75 Total: -74.81 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.57 4.82 -59.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474361940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.103 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds