Wall clock time and date at job start Tue Mar 31 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 120.00339 * 2 1 4 4 C 1.38214 * 120.00182 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00116 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00027 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47155 * 77.91121 * 6 5 4 8 8 C 1.46894 * 111.00379 * 154.13465 * 7 6 5 9 9 C 1.50698 * 109.47603 * 207.38706 * 8 7 6 10 10 H 1.08009 * 119.99511 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00547 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99632 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00177 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47364 * 59.99648 * 13 11 9 15 15 H 1.48503 * 109.46934 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47256 * 299.99651 * 13 11 9 17 17 C 1.46905 * 110.99631 * 278.08923 * 7 6 5 18 18 C 1.53000 * 109.46760 * 311.29924 * 17 7 6 19 19 C 1.53004 * 109.46858 * 89.76919 * 18 17 7 20 20 C 1.53006 * 109.47275 * 209.76212 * 18 17 7 21 21 C 1.52994 * 109.47537 * 329.76576 * 18 17 7 22 22 C 1.38219 * 119.99924 * 359.97438 * 5 4 3 23 23 C 1.38223 * 119.99954 * 179.72770 * 2 1 3 24 24 C 1.50701 * 119.99654 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.46978 * 89.99935 * 1 2 3 26 26 H 1.09004 * 109.46791 * 329.99756 * 1 2 3 27 27 H 1.08998 * 109.46732 * 210.00147 * 1 2 3 28 28 H 1.08007 * 119.99757 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.99494 * 180.02562 * 4 3 2 30 30 H 1.09008 * 109.46810 * 197.90865 * 6 5 4 31 31 H 1.08996 * 109.46994 * 317.90437 * 6 5 4 32 32 H 1.09005 * 109.46842 * 327.38523 * 8 7 6 33 33 H 1.08998 * 109.47269 * 87.38496 * 8 7 6 34 34 H 0.97003 * 119.99559 * 180.02562 * 12 11 9 35 35 H 1.08993 * 109.47427 * 71.30282 * 17 7 6 36 36 H 1.09000 * 109.47190 * 191.30705 * 17 7 6 37 37 H 1.09003 * 109.47380 * 53.15541 * 19 18 17 38 38 H 1.09002 * 109.47145 * 173.15994 * 19 18 17 39 39 H 1.09002 * 109.46775 * 293.16031 * 19 18 17 40 40 H 1.09006 * 109.46489 * 60.00400 * 20 18 17 41 41 H 1.08997 * 109.47037 * 180.02562 * 20 18 17 42 42 H 1.08997 * 109.47018 * 300.01032 * 20 18 17 43 43 H 1.09004 * 109.47372 * 37.24710 * 21 18 17 44 44 H 1.09003 * 109.47306 * 157.23883 * 21 18 17 45 45 H 1.08999 * 109.47193 * 277.24479 * 21 18 17 46 46 H 1.07996 * 119.99676 * 180.02562 * 22 5 4 47 47 H 1.08998 * 109.47419 * 90.00132 * 24 23 2 48 48 H 1.09003 * 109.46950 * 209.99843 * 24 23 2 49 49 H 1.08998 * 109.47332 * 329.99762 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0001 0.0005 6 6 5.7788 -0.0001 0.0017 7 7 6.2674 0.2894 1.3564 8 6 7.6061 -0.2779 1.5657 9 6 7.8031 -0.5739 3.0301 10 1 7.0128 -0.3613 3.7350 11 6 8.9924 -1.1150 3.4703 12 7 9.9548 -1.3733 2.6120 13 14 9.2367 -1.4811 5.2857 14 1 8.2107 -2.4553 5.7367 15 1 10.5901 -2.0547 5.4971 16 1 9.1035 -0.2249 6.0664 17 6 6.2607 1.7344 1.6209 18 6 6.9294 2.4688 0.4571 19 6 5.8762 2.8236 -0.5946 20 6 7.5867 3.7505 0.9731 21 6 7.9938 1.5670 -0.1710 22 6 3.5806 -1.1971 0.0005 23 6 2.1981 -1.1970 0.0057 24 6 1.4445 -2.5021 0.0125 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.6584 2.1326 0.0004 29 1 4.1204 2.1325 0.0010 30 1 6.1423 -0.9779 -0.3145 31 1 6.1426 0.7628 -0.6866 32 1 7.7037 -1.1999 0.9924 33 1 8.3595 0.4370 1.2350 34 1 10.7914 -1.7543 2.9216 35 1 5.2323 2.0799 1.7257 36 1 6.8080 1.9379 2.5413 37 1 5.0565 3.3634 -0.1203 38 1 6.3275 3.4507 -1.3635 39 1 5.4944 1.9094 -1.0491 40 1 8.3370 3.4978 1.7224 41 1 8.0627 4.2740 0.1439 42 1 6.8284 4.3930 1.4206 43 1 7.6428 0.5351 -0.1692 44 1 8.1806 1.8854 -1.1966 45 1 8.9163 1.6381 0.4052 46 1 4.1207 -2.1323 0.0010 47 1 1.2625 -2.8219 -1.0135 48 1 2.0338 -3.2592 0.5298 49 1 0.4924 -2.3692 0.5260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559553556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:21 Heat of formation + Delta-G solvation = 73.724760 kcal Electronic energy + Delta-G solvation = -24425.700096 eV Core-core repulsion = 21354.718749 eV Total energy + Delta-G solvation = -3070.981348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29148 -38.69732 -34.15430 -33.52695 -32.20736 -31.74930 -28.70117 -27.96747 -27.56000 -26.46246 -26.14244 -24.98686 -23.14799 -21.76002 -20.63122 -19.52378 -18.47347 -16.44621 -15.82910 -15.58646 -15.07149 -14.79772 -14.67129 -14.21709 -14.03301 -14.01301 -13.42976 -13.17744 -12.93740 -12.77110 -12.58981 -12.48188 -12.15349 -11.87861 -11.75362 -11.55029 -11.35737 -11.20819 -11.08930 -10.99348 -10.87939 -10.77906 -10.60105 -10.53974 -10.34992 -10.29254 -9.87775 -9.67227 -9.62809 -9.07923 -8.38564 -8.32610 -8.06372 -6.97777 -5.94256 -3.94041 1.68850 1.74578 3.37234 3.40971 3.44780 4.03178 4.49369 4.98479 5.02624 5.07205 5.19862 5.21093 5.22801 5.24351 5.38847 5.42981 5.46864 5.52935 5.59986 5.71326 5.73130 5.82833 5.84134 5.87808 5.95324 5.97360 5.98782 6.03591 6.08232 6.14566 6.19766 6.29824 6.36116 6.43410 6.51059 6.54917 6.60797 6.72711 6.78480 6.84668 6.91376 6.92633 7.09551 7.28446 7.39723 7.49634 7.91451 8.20006 8.29642 8.64269 9.12856 9.68515 11.14795 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.005161 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.543708 B = 5423.888543 C = 6721.669011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.122 4.122 4 C -0.141 4.141 5 C -0.054 4.054 6 C 0.053 3.947 7 N -0.523 5.523 8 C 0.161 3.839 9 C -0.498 4.498 10 H 0.059 0.941 11 C 0.054 3.946 12 N -0.902 5.902 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.069 3.931 18 C -0.102 4.102 19 C -0.163 4.163 20 C -0.135 4.135 21 C -0.168 4.168 22 C -0.104 4.104 23 C -0.091 4.091 24 C -0.114 4.114 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.022 0.978 33 H 0.038 0.962 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.118 0.882 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 5.644 -8.294 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.159 4.159 5 C -0.054 4.054 6 C -0.074 4.074 7 N -0.245 5.245 8 C 0.037 3.963 9 C -0.537 4.537 10 H 0.077 0.923 11 C -0.146 4.146 12 N -0.543 5.543 13 Si 0.722 3.278 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.060 4.060 18 C -0.104 4.104 19 C -0.219 4.219 20 C -0.192 4.192 21 C -0.225 4.225 22 C -0.123 4.123 23 C -0.091 4.091 24 C -0.171 4.171 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.158 0.842 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.847 5.312 -7.947 16.826 hybrid contribution 0.823 0.127 0.556 1.001 sum -13.025 5.439 -7.391 15.933 Atomic orbital electron populations 1.20792 0.92052 1.02339 1.01672 1.19625 0.95364 0.92908 1.02480 1.20924 0.94381 0.96840 1.01820 1.21870 0.94136 0.99379 1.00487 1.19999 0.96173 0.92639 0.96634 1.21917 0.90231 1.02022 0.93258 1.62208 1.29277 1.10961 1.22074 1.20609 0.83526 0.94908 0.97268 1.21217 0.99218 1.40176 0.93066 0.92261 1.24937 0.96027 0.96158 0.97511 1.69940 1.05477 1.44983 1.33880 0.86631 0.76945 0.78578 0.85647 1.20362 1.21506 1.20410 1.22298 0.98969 0.87752 0.96966 1.21198 0.95877 0.96249 0.97027 1.22795 0.98530 1.01841 0.98733 1.21853 1.00207 0.96602 1.00569 1.22941 0.99112 1.01770 0.98662 1.20944 0.93052 0.98006 1.00299 1.19662 0.93734 0.94513 1.01204 1.20817 0.99911 0.94566 1.01779 0.91805 0.92117 0.91546 0.86933 0.84166 0.91239 0.90466 0.96021 0.94463 0.93083 0.92323 0.90348 0.92460 0.93344 0.90173 0.92252 0.93507 0.93244 0.88996 0.94549 0.91478 0.86387 0.91684 0.91682 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.61 36.01 0.35 -0.78 16 2 C -0.10 -1.39 5.88 -104.62 -0.62 -2.00 16 3 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 4 C -0.14 -2.12 7.68 -39.59 -0.30 -2.42 16 5 C -0.05 -0.89 5.30 -104.62 -0.55 -1.45 16 6 C 0.05 0.94 3.71 -4.98 -0.02 0.93 16 7 N -0.52 -10.96 4.46 -237.52 -1.06 -12.02 16 8 C 0.16 4.00 3.40 -4.98 -0.02 3.99 16 9 C -0.50 -13.93 8.95 -34.44 -0.31 -14.24 16 10 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 11 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.07 1.29 4.85 -3.82 -0.02 1.27 16 18 C -0.10 -1.62 0.77 -154.51 -0.12 -1.74 16 19 C -0.16 -2.18 6.38 37.16 0.24 -1.94 16 20 C -0.13 -1.96 8.19 37.16 0.30 -1.66 16 21 C -0.17 -2.98 6.20 37.15 0.23 -2.75 16 22 C -0.10 -1.68 9.33 -39.58 -0.37 -2.05 16 23 C -0.09 -1.29 5.88 -104.62 -0.62 -1.91 16 24 C -0.11 -1.28 9.60 36.01 0.35 -0.94 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.07 0.61 5.94 -51.93 -0.31 0.31 16 28 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 29 H 0.14 1.95 2.67 -52.49 -0.14 1.81 16 30 H 0.07 1.30 7.23 -51.92 -0.38 0.92 16 31 H 0.08 1.28 2.35 -51.93 -0.12 1.16 16 32 H 0.02 0.59 7.37 -51.93 -0.38 0.21 16 33 H 0.04 0.95 3.85 -51.93 -0.20 0.75 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.06 1.03 6.12 -51.93 -0.32 0.71 16 36 H 0.08 1.63 7.37 -51.93 -0.38 1.25 16 37 H 0.06 0.71 6.42 -51.93 -0.33 0.37 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.11 3.58 -51.93 -0.19 0.93 16 40 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.78 2.69 -51.93 -0.14 1.64 16 44 H 0.04 0.56 7.94 -51.93 -0.41 0.15 16 45 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 46 H 0.12 1.87 8.02 -52.49 -0.42 1.44 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 49 H 0.07 0.65 5.94 -51.93 -0.31 0.34 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -29.50 352.89 -9.71 -39.20 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.72 Total: 4.67 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -1.96 Total: -28.31 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.32 Total: -37.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.50 -9.71 -39.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559553556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.928 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds