Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 120.00339 * 2 1 4 4 C 1.38214 * 120.00182 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00116 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00027 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47155 * 77.91121 * 6 5 4 8 8 C 1.46894 * 111.00379 * 154.13465 * 7 6 5 9 9 C 1.50698 * 109.47603 * 207.38706 * 8 7 6 10 10 H 1.08009 * 119.99511 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00547 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99632 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00177 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47364 * 59.99648 * 13 11 9 15 15 H 1.48503 * 109.46934 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47256 * 299.99651 * 13 11 9 17 17 C 1.46905 * 110.99631 * 278.08923 * 7 6 5 18 18 C 1.53000 * 109.46760 * 311.29924 * 17 7 6 19 19 C 1.53004 * 109.46858 * 89.76919 * 18 17 7 20 20 C 1.53006 * 109.47275 * 209.76212 * 18 17 7 21 21 C 1.52994 * 109.47537 * 329.76576 * 18 17 7 22 22 C 1.38219 * 119.99924 * 359.97438 * 5 4 3 23 23 C 1.38223 * 119.99954 * 179.72770 * 2 1 3 24 24 C 1.50701 * 119.99654 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.46978 * 89.99935 * 1 2 3 26 26 H 1.09004 * 109.46791 * 329.99756 * 1 2 3 27 27 H 1.08998 * 109.46732 * 210.00147 * 1 2 3 28 28 H 1.08007 * 119.99757 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.99494 * 180.02562 * 4 3 2 30 30 H 1.09008 * 109.46810 * 197.90865 * 6 5 4 31 31 H 1.08996 * 109.46994 * 317.90437 * 6 5 4 32 32 H 1.09005 * 109.46842 * 327.38523 * 8 7 6 33 33 H 1.08998 * 109.47269 * 87.38496 * 8 7 6 34 34 H 0.97003 * 119.99559 * 180.02562 * 12 11 9 35 35 H 1.08993 * 109.47427 * 71.30282 * 17 7 6 36 36 H 1.09000 * 109.47190 * 191.30705 * 17 7 6 37 37 H 1.09003 * 109.47380 * 53.15541 * 19 18 17 38 38 H 1.09002 * 109.47145 * 173.15994 * 19 18 17 39 39 H 1.09002 * 109.46775 * 293.16031 * 19 18 17 40 40 H 1.09006 * 109.46489 * 60.00400 * 20 18 17 41 41 H 1.08997 * 109.47037 * 180.02562 * 20 18 17 42 42 H 1.08997 * 109.47018 * 300.01032 * 20 18 17 43 43 H 1.09004 * 109.47372 * 37.24710 * 21 18 17 44 44 H 1.09003 * 109.47306 * 157.23883 * 21 18 17 45 45 H 1.08999 * 109.47193 * 277.24479 * 21 18 17 46 46 H 1.07996 * 119.99676 * 180.02562 * 22 5 4 47 47 H 1.08998 * 109.47419 * 90.00132 * 24 23 2 48 48 H 1.09003 * 109.46950 * 209.99843 * 24 23 2 49 49 H 1.08998 * 109.47332 * 329.99762 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0001 0.0005 6 6 5.7788 -0.0001 0.0017 7 7 6.2674 0.2894 1.3564 8 6 7.6061 -0.2779 1.5657 9 6 7.8031 -0.5739 3.0301 10 1 7.0128 -0.3613 3.7350 11 6 8.9924 -1.1150 3.4703 12 7 9.9548 -1.3733 2.6120 13 14 9.2367 -1.4811 5.2857 14 1 8.2107 -2.4553 5.7367 15 1 10.5901 -2.0547 5.4971 16 1 9.1035 -0.2249 6.0664 17 6 6.2607 1.7344 1.6209 18 6 6.9294 2.4688 0.4571 19 6 5.8762 2.8236 -0.5946 20 6 7.5867 3.7505 0.9731 21 6 7.9938 1.5670 -0.1710 22 6 3.5806 -1.1971 0.0005 23 6 2.1981 -1.1970 0.0057 24 6 1.4445 -2.5021 0.0125 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.6584 2.1326 0.0004 29 1 4.1204 2.1325 0.0010 30 1 6.1423 -0.9779 -0.3145 31 1 6.1426 0.7628 -0.6866 32 1 7.7037 -1.1999 0.9924 33 1 8.3595 0.4370 1.2350 34 1 10.7914 -1.7543 2.9216 35 1 5.2323 2.0799 1.7257 36 1 6.8080 1.9379 2.5413 37 1 5.0565 3.3634 -0.1203 38 1 6.3275 3.4507 -1.3635 39 1 5.4944 1.9094 -1.0491 40 1 8.3370 3.4978 1.7224 41 1 8.0627 4.2740 0.1439 42 1 6.8284 4.3930 1.4206 43 1 7.6428 0.5351 -0.1692 44 1 8.1806 1.8854 -1.1966 45 1 8.9163 1.6381 0.4052 46 1 4.1207 -2.1323 0.0010 47 1 1.2625 -2.8219 -1.0135 48 1 2.0338 -3.2592 0.5298 49 1 0.4924 -2.3692 0.5260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559553556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = 58.358493 kcal Electronic energy + Delta-G solvation = -24426.366428 eV Core-core repulsion = 21354.718749 eV Total energy + Delta-G solvation = -3071.647679 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67045 -39.89049 -35.65177 -34.99903 -33.89286 -32.90237 -30.07095 -29.41995 -28.73547 -28.14015 -27.26399 -26.28427 -24.80606 -22.86546 -22.29616 -20.74346 -19.81332 -18.50998 -17.08847 -16.91511 -16.60504 -16.32804 -16.04149 -15.62380 -15.46589 -15.00743 -14.85238 -14.53277 -14.28998 -13.95915 -13.68407 -13.53608 -13.45805 -13.10076 -13.03600 -12.85002 -12.83101 -12.63019 -12.55961 -12.38257 -12.37638 -12.27250 -12.12647 -11.92984 -11.86322 -11.60716 -11.44633 -11.40893 -11.10056 -10.90178 -10.47287 -9.51399 -9.20251 -8.65959 -8.10667 -6.20993 0.55875 0.61198 1.38751 1.41202 1.49074 2.41799 2.87809 3.16931 3.58932 3.88828 3.91366 3.95430 4.03097 4.08607 4.16268 4.26447 4.30402 4.45932 4.51216 4.58231 4.62494 4.70386 4.71401 4.76623 4.81388 4.83558 4.91364 4.93559 4.96390 5.02065 5.08430 5.10931 5.11578 5.17561 5.21451 5.30162 5.32007 5.37578 5.46560 5.48694 5.52620 5.55463 5.67724 5.76301 5.85024 5.91421 6.19205 6.29857 6.54099 6.73569 6.93980 7.46297 8.94889 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.005161 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.543708 B = 5423.888543 C = 6721.669011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.124 4.124 4 C -0.146 4.146 5 C -0.075 4.075 6 C 0.060 3.940 7 N -0.536 5.536 8 C 0.178 3.822 9 C -0.517 4.517 10 H 0.048 0.952 11 C 0.005 3.995 12 N -0.933 5.933 13 Si 0.958 3.042 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.072 3.928 18 C -0.097 4.097 19 C -0.156 4.156 20 C -0.131 4.131 21 C -0.165 4.165 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.113 4.113 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.142 0.858 29 H 0.152 0.848 30 H 0.046 0.954 31 H 0.095 0.905 32 H -0.012 1.012 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 7.370 -8.533 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.164 4.164 5 C -0.076 4.076 6 C -0.066 4.066 7 N -0.259 5.259 8 C 0.053 3.947 9 C -0.555 4.555 10 H 0.066 0.934 11 C -0.193 4.193 12 N -0.574 5.574 13 Si 0.784 3.216 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.057 4.057 18 C -0.099 4.099 19 C -0.212 4.212 20 C -0.188 4.188 21 C -0.222 4.222 22 C -0.148 4.148 23 C -0.100 4.100 24 C -0.169 4.169 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.006 0.994 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.122 0.878 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.455 7.046 -8.193 19.686 hybrid contribution 1.567 -0.425 0.585 1.726 sum -14.888 6.621 -7.608 17.982 Atomic orbital electron populations 1.20857 0.89331 1.03479 1.02996 1.20087 0.97396 0.92336 1.00704 1.21298 0.93915 0.98290 1.00665 1.22001 0.95024 0.98885 1.00464 1.19901 0.94970 0.93831 0.98913 1.21848 0.91647 1.01232 0.91870 1.62090 1.26726 1.12610 1.24447 1.20270 0.85806 0.93478 0.95151 1.21538 0.99156 1.40374 0.94461 0.93350 1.25740 0.95690 0.95872 1.01956 1.70058 1.05878 1.45603 1.35840 0.85610 0.77048 0.78620 0.80357 1.20015 1.20719 1.19493 1.22274 0.99724 0.86723 0.96960 1.21128 0.95967 0.96086 0.96672 1.22696 0.98148 1.02108 0.98274 1.21809 1.00183 0.96145 1.00692 1.22819 0.98361 1.01241 0.99742 1.21034 0.94399 0.97482 1.01881 1.19994 0.93030 0.96424 1.00522 1.20863 1.00186 0.92955 1.02898 0.90236 0.90791 0.90665 0.84064 0.83114 0.93572 0.88815 0.99427 0.95029 0.92945 0.90671 0.93276 0.90552 0.91281 0.90806 0.94610 0.91660 0.91255 0.91160 0.92152 0.94493 0.87782 0.90218 0.92378 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.61 71.24 0.68 -1.11 16 2 C -0.11 -2.53 5.88 -19.86 -0.12 -2.65 16 3 C -0.12 -3.03 9.70 22.27 0.22 -2.82 16 4 C -0.15 -4.14 7.68 22.27 0.17 -3.97 16 5 C -0.08 -2.54 5.30 -19.87 -0.11 -2.64 16 6 C 0.06 2.27 3.71 85.56 0.32 2.59 16 7 N -0.54 -23.54 4.46 -905.39 -4.04 -27.58 16 8 C 0.18 9.45 3.40 85.56 0.29 9.75 16 9 C -0.52 -30.24 8.95 25.60 0.23 -30.01 16 10 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 11 C 0.00 0.28 5.46 84.65 0.46 0.75 16 12 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 13 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 14 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.07 2.71 4.85 86.30 0.42 3.13 16 18 C -0.10 -3.02 0.77 -52.18 -0.04 -3.06 16 19 C -0.16 -3.77 6.38 71.98 0.46 -3.31 16 20 C -0.13 -3.64 8.19 71.98 0.59 -3.05 16 21 C -0.17 -6.00 6.20 71.98 0.45 -5.55 16 22 C -0.13 -4.27 9.33 22.27 0.21 -4.06 16 23 C -0.10 -2.72 5.88 -19.86 -0.12 -2.84 16 24 C -0.11 -2.36 9.60 71.24 0.68 -1.67 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 27 H 0.07 1.11 5.94 -2.39 -0.01 1.09 16 28 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.15 3.82 2.67 -2.91 -0.01 3.81 16 30 H 0.05 1.89 7.23 -2.38 -0.02 1.87 16 31 H 0.09 3.16 2.35 -2.39 -0.01 3.15 16 32 H -0.01 -0.72 7.37 -2.38 -0.02 -0.74 16 33 H 0.03 1.73 3.85 -2.39 -0.01 1.72 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.08 2.57 6.12 -2.39 -0.01 2.55 16 36 H 0.05 2.12 7.37 -2.39 -0.02 2.10 16 37 H 0.08 1.59 6.42 -2.39 -0.02 1.57 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.91 3.58 -2.39 -0.01 1.90 16 40 H 0.03 1.15 8.09 -2.38 -0.02 1.13 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 2.87 2.69 -2.39 -0.01 2.87 16 44 H 0.06 1.85 7.94 -2.39 -0.02 1.84 16 45 H 0.04 1.54 6.75 -2.39 -0.02 1.52 16 46 H 0.10 3.57 8.02 -2.91 -0.02 3.55 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 49 H 0.08 1.44 5.94 -2.39 -0.01 1.42 16 Total: -1.00 -66.54 352.89 4.01 -62.53 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.94 Total: 24.11 kcal Atomic # 6 Polarization: -55.34 SS G_CDS: 4.80 Total: -50.54 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.76 Total: -83.95 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -66.54 4.01 -62.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559553556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.889 kcal (2) G-P(sol) polarization free energy of solvation -66.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds