Wall clock time and date at job start Tue Mar 31 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46705 * 2 1 4 4 H 1.08991 * 109.47290 * 305.31321 * 3 2 1 5 5 C 1.52997 * 109.47066 * 65.31669 * 3 2 1 6 6 N 1.46904 * 109.47095 * 180.19904 * 5 3 2 7 7 C 1.46901 * 110.99794 * 72.65741 * 6 5 3 8 8 C 1.52991 * 109.47522 * 218.44191 * 7 6 5 9 9 C 1.46898 * 111.00360 * 196.61613 * 6 5 3 10 10 H 1.08994 * 109.47085 * 52.07070 * 9 6 5 11 11 C 1.53007 * 109.46827 * 292.07452 * 9 6 5 12 12 C 1.52991 * 109.47205 * 172.07364 * 9 6 5 13 13 C 1.50707 * 109.47265 * 297.95219 * 12 9 6 14 14 H 1.07996 * 119.99361 * 0.02562 * 13 12 9 15 15 C 1.37877 * 120.00197 * 179.97438 * 13 12 9 16 16 N 1.31512 * 119.99964 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99854 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47108 * 89.99739 * 17 15 13 19 19 H 1.48502 * 109.46680 * 209.99531 * 17 15 13 20 20 H 1.48497 * 109.47079 * 329.99692 * 17 15 13 21 21 C 1.50707 * 109.46680 * 185.31529 * 3 2 1 22 22 C 1.38239 * 119.99748 * 299.72511 * 21 3 2 23 23 C 1.38241 * 119.99563 * 179.78705 * 22 21 3 24 24 C 1.38232 * 119.99653 * 0.44497 * 23 22 21 25 25 C 1.38233 * 120.00709 * 359.80881 * 24 23 22 26 26 C 1.38235 * 119.99855 * 120.00035 * 21 3 2 27 27 H 1.09001 * 109.47188 * 303.42375 * 1 2 3 28 28 H 1.09000 * 109.46662 * 63.41635 * 1 2 3 29 29 H 1.08998 * 109.47064 * 183.41647 * 1 2 3 30 30 H 1.08998 * 109.47280 * 240.00095 * 2 1 3 31 31 H 1.09000 * 109.47079 * 119.99369 * 2 1 3 32 32 H 1.09004 * 109.47498 * 60.20584 * 5 3 2 33 33 H 1.08993 * 109.47131 * 300.20259 * 5 3 2 34 34 H 1.09003 * 109.47007 * 338.44979 * 7 6 5 35 35 H 1.09002 * 109.46514 * 98.43906 * 7 6 5 36 36 H 1.09001 * 109.47447 * 161.63791 * 8 7 6 37 37 H 1.08996 * 109.47168 * 281.63532 * 8 7 6 38 38 H 1.09002 * 109.47222 * 41.63859 * 8 7 6 39 39 H 1.08991 * 109.47122 * 59.99358 * 11 9 6 40 40 H 1.09001 * 109.46951 * 179.97438 * 11 9 6 41 41 H 1.09003 * 109.46917 * 299.99934 * 11 9 6 42 42 H 1.08998 * 109.47296 * 57.95128 * 12 9 6 43 43 H 1.09000 * 109.47241 * 177.95350 * 12 9 6 44 44 H 0.97002 * 120.00088 * 180.02562 * 16 15 13 45 45 H 1.08000 * 120.00282 * 0.02562 * 22 21 3 46 46 H 1.07995 * 119.99454 * 180.27748 * 23 22 21 47 47 H 1.08001 * 119.99100 * 179.83421 * 24 23 22 48 48 H 1.07997 * 120.00291 * 180.02562 * 25 24 23 49 49 H 1.07994 * 120.00176 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6011 1.9831 -0.8385 5 6 1.6420 2.1242 1.3107 6 7 2.1275 3.5107 1.3087 7 6 1.3384 4.3434 0.3910 8 6 2.2628 5.3298 -0.3253 9 6 2.1219 4.0725 2.6660 10 1 2.6536 3.4004 3.3395 11 6 0.6777 4.2362 3.1442 12 6 2.8137 5.4370 2.6560 13 6 4.2504 5.2688 2.2332 14 1 4.6317 4.2869 1.9950 15 6 5.0776 6.3687 2.1494 16 7 6.3315 6.2218 1.7809 17 14 4.4178 8.0672 2.5608 18 1 4.6162 8.3383 4.0073 19 1 5.1438 9.0870 1.7619 20 1 2.9691 8.1264 2.2402 21 6 3.5413 1.4446 -0.1316 22 6 4.3198 0.8201 0.8249 23 6 5.6967 0.8182 0.7018 24 6 6.2954 1.4487 -0.3729 25 6 5.5171 2.0777 -1.3266 26 6 4.1401 2.0759 -1.2058 27 1 -0.3633 0.5661 0.8577 28 1 -0.3633 0.4599 -0.9190 29 1 -0.3633 -1.0258 0.0612 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.0840 1.5858 2.1491 33 1 0.5564 2.1194 1.4076 34 1 0.8460 3.7072 -0.3445 35 1 0.5867 4.8945 0.9560 36 1 1.7656 5.7122 -1.2167 37 1 2.4980 6.1581 0.3430 38 1 3.1836 4.8220 -0.6125 39 1 0.1849 3.2641 3.1512 40 1 0.6736 4.6526 4.1516 41 1 0.1460 4.9082 2.4706 42 1 2.3036 6.0978 1.9551 43 1 2.7775 5.8701 3.6557 44 1 6.9136 6.9955 1.7223 45 1 3.8522 0.3304 1.6663 46 1 6.3047 0.3265 1.4467 47 1 7.3712 1.4494 -0.4675 48 1 5.9849 2.5699 -2.1664 49 1 3.5320 2.5672 -1.9509 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559769134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:53 Heat of formation + Delta-G solvation = 20.261526 kcal Electronic energy + Delta-G solvation = -24965.423395 eV Core-core repulsion = 21892.123708 eV Total energy + Delta-G solvation = -3073.299687 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.39722 -37.88669 -35.40593 -32.59857 -31.23498 -30.70383 -30.30981 -29.77023 -27.67496 -26.36764 -23.82000 -22.91459 -22.32910 -21.58140 -21.42211 -19.24926 -18.54777 -16.50394 -16.41891 -16.00329 -15.08422 -14.99463 -14.24339 -14.06127 -13.94218 -13.50517 -13.31520 -13.12490 -12.80228 -12.70063 -12.48624 -12.34140 -12.12559 -11.80961 -11.74514 -11.61968 -11.55562 -11.37301 -11.11770 -10.91454 -10.71869 -10.59657 -10.55176 -10.30197 -10.19420 -10.05233 -9.67220 -9.48701 -9.38369 -8.90805 -8.32655 -8.25455 -8.01408 -7.34628 -5.80717 -3.72765 2.03717 2.05819 3.38634 3.47037 3.48858 4.39942 4.53370 4.61105 4.90073 5.06208 5.24702 5.38900 5.50832 5.52509 5.56177 5.57172 5.63216 5.67399 5.72781 5.75928 5.84678 5.86795 5.90030 5.94199 6.00014 6.09090 6.11795 6.12378 6.17958 6.32261 6.35041 6.43898 6.49161 6.50060 6.63694 6.64327 6.65616 6.78545 6.98592 7.07631 7.12734 7.14146 7.24090 7.32590 7.61785 7.64355 7.93271 7.96921 8.08793 8.83812 9.36440 9.82816 11.33136 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.006945 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.371679 B = 4030.665530 C = 5260.095789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.044 4.044 4 H 0.073 0.927 5 C 0.062 3.938 6 N -0.500 5.500 7 C 0.052 3.948 8 C -0.142 4.142 9 C 0.098 3.902 10 H 0.071 0.929 11 C -0.190 4.190 12 C -0.013 4.013 13 C -0.475 4.475 14 H 0.082 0.918 15 C 0.063 3.937 16 N -0.906 5.906 17 Si 0.863 3.137 18 H -0.282 1.282 19 H -0.292 1.292 20 H -0.269 1.269 21 C -0.041 4.041 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.105 4.105 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.007 0.993 44 H 0.256 0.744 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -11.448 -4.505 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.063 4.063 4 H 0.092 0.908 5 C -0.066 4.066 6 N -0.223 5.223 7 C -0.075 4.075 8 C -0.200 4.200 9 C -0.010 4.010 10 H 0.089 0.911 11 C -0.249 4.249 12 C -0.050 4.050 13 C -0.514 4.514 14 H 0.100 0.900 15 C -0.136 4.136 16 N -0.547 5.547 17 Si 0.692 3.308 18 H -0.209 1.209 19 H -0.218 1.218 20 H -0.194 1.194 21 C -0.041 4.041 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.123 4.123 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.025 0.975 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.130 0.870 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.115 -11.343 -4.705 15.293 hybrid contribution -0.978 1.293 0.644 1.745 sum -10.093 -10.050 -4.061 14.811 Atomic orbital electron populations 1.21839 0.96141 1.01206 1.01868 1.21556 0.95347 0.96204 1.02109 1.20246 0.92170 0.95172 0.98710 0.90821 1.22196 0.96556 0.91120 0.96712 1.62124 1.52320 0.99661 1.08156 1.22125 0.94865 0.95585 0.94965 1.21915 0.99967 0.99810 0.98270 1.21689 0.92194 0.98953 0.88200 0.91124 1.22615 1.00294 1.00503 1.01463 1.19837 0.97601 0.91630 0.95918 1.21000 0.92007 0.95900 1.42469 0.90001 1.24953 0.94834 0.97981 0.95799 1.69915 1.05325 1.29612 1.49826 0.87066 0.79378 0.86078 0.78322 1.20864 1.21811 1.19441 1.19391 0.94219 0.96344 0.94189 1.20729 0.93539 1.00455 0.98138 1.20946 0.94770 1.00089 0.97634 1.20948 0.99210 0.98717 0.95147 1.20965 0.93965 0.98962 0.99142 1.20812 0.94489 0.98932 0.98057 0.92490 0.92945 0.93083 0.91940 0.91896 0.91469 0.95339 0.93325 0.94270 0.95234 0.91237 0.91050 0.93915 0.92737 0.92599 0.95839 0.97474 0.93382 0.87308 0.87084 0.87049 0.87012 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.75 37.16 0.36 -1.12 16 2 C -0.11 -1.27 5.14 -26.72 -0.14 -1.41 16 3 C -0.04 -0.60 2.01 -91.77 -0.18 -0.79 16 4 H 0.07 1.02 6.50 -51.93 -0.34 0.68 16 5 C 0.06 0.93 3.22 -3.82 -0.01 0.91 16 6 N -0.50 -9.00 3.51 -226.66 -0.80 -9.79 16 7 C 0.05 0.89 4.89 -3.83 -0.02 0.87 16 8 C -0.14 -2.73 9.19 37.15 0.34 -2.39 16 9 C 0.10 1.90 2.28 -67.71 -0.15 1.75 16 10 H 0.07 1.44 7.90 -51.93 -0.41 1.03 16 11 C -0.19 -3.06 8.65 37.16 0.32 -2.73 16 12 C -0.01 -0.29 3.00 -27.88 -0.08 -0.38 16 13 C -0.48 -13.15 8.53 -34.44 -0.29 -13.45 16 14 H 0.08 2.53 7.96 -52.49 -0.42 2.12 16 15 C 0.06 1.83 5.47 -17.82 -0.10 1.74 16 16 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 17 Si 0.86 21.96 27.47 -169.99 -4.67 17.29 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 21 C -0.04 -0.66 4.38 -104.62 -0.46 -1.12 16 22 C -0.11 -1.79 8.76 -39.58 -0.35 -2.14 16 23 C -0.12 -1.94 10.05 -39.58 -0.40 -2.33 16 24 C -0.12 -2.08 10.05 -39.59 -0.40 -2.48 16 25 C -0.11 -1.92 10.05 -39.58 -0.40 -2.31 16 26 C -0.10 -1.75 9.67 -39.58 -0.38 -2.14 16 27 H 0.06 0.57 6.42 -51.93 -0.33 0.23 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 32 H 0.07 1.02 7.05 -51.93 -0.37 0.66 16 33 H 0.03 0.39 5.63 -51.93 -0.29 0.10 16 34 H 0.05 0.73 6.33 -51.93 -0.33 0.40 16 35 H 0.04 0.66 5.14 -51.93 -0.27 0.40 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 1.53 5.34 -51.93 -0.28 1.25 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.04 0.61 7.01 -51.93 -0.36 0.24 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.89 5.83 -51.93 -0.30 0.59 16 42 H 0.02 0.56 4.11 -51.93 -0.21 0.34 16 43 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.11 1.59 7.17 -52.49 -0.38 1.21 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 48 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 49 H 0.11 1.69 7.95 -52.49 -0.42 1.28 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -30.29 367.61 -9.95 -40.24 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.46 Total: 3.52 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -2.34 Total: -29.51 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.02 Total: -37.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.29 -9.95 -40.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559769134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.503 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds