Wall clock time and date at job start Tue Mar 31 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46705 * 2 1 4 4 H 1.08991 * 109.47290 * 305.31321 * 3 2 1 5 5 C 1.52997 * 109.47066 * 65.31669 * 3 2 1 6 6 N 1.46904 * 109.47095 * 180.19904 * 5 3 2 7 7 C 1.46901 * 110.99794 * 72.65741 * 6 5 3 8 8 C 1.52991 * 109.47522 * 218.44191 * 7 6 5 9 9 C 1.46898 * 111.00360 * 196.61613 * 6 5 3 10 10 H 1.08994 * 109.47085 * 52.07070 * 9 6 5 11 11 C 1.53007 * 109.46827 * 292.07452 * 9 6 5 12 12 C 1.52991 * 109.47205 * 172.07364 * 9 6 5 13 13 C 1.50707 * 109.47265 * 297.95219 * 12 9 6 14 14 H 1.07996 * 119.99361 * 0.02562 * 13 12 9 15 15 C 1.37877 * 120.00197 * 179.97438 * 13 12 9 16 16 N 1.31512 * 119.99964 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99854 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47108 * 89.99739 * 17 15 13 19 19 H 1.48502 * 109.46680 * 209.99531 * 17 15 13 20 20 H 1.48497 * 109.47079 * 329.99692 * 17 15 13 21 21 C 1.50707 * 109.46680 * 185.31529 * 3 2 1 22 22 C 1.38239 * 119.99748 * 299.72511 * 21 3 2 23 23 C 1.38241 * 119.99563 * 179.78705 * 22 21 3 24 24 C 1.38232 * 119.99653 * 0.44497 * 23 22 21 25 25 C 1.38233 * 120.00709 * 359.80881 * 24 23 22 26 26 C 1.38235 * 119.99855 * 120.00035 * 21 3 2 27 27 H 1.09001 * 109.47188 * 303.42375 * 1 2 3 28 28 H 1.09000 * 109.46662 * 63.41635 * 1 2 3 29 29 H 1.08998 * 109.47064 * 183.41647 * 1 2 3 30 30 H 1.08998 * 109.47280 * 240.00095 * 2 1 3 31 31 H 1.09000 * 109.47079 * 119.99369 * 2 1 3 32 32 H 1.09004 * 109.47498 * 60.20584 * 5 3 2 33 33 H 1.08993 * 109.47131 * 300.20259 * 5 3 2 34 34 H 1.09003 * 109.47007 * 338.44979 * 7 6 5 35 35 H 1.09002 * 109.46514 * 98.43906 * 7 6 5 36 36 H 1.09001 * 109.47447 * 161.63791 * 8 7 6 37 37 H 1.08996 * 109.47168 * 281.63532 * 8 7 6 38 38 H 1.09002 * 109.47222 * 41.63859 * 8 7 6 39 39 H 1.08991 * 109.47122 * 59.99358 * 11 9 6 40 40 H 1.09001 * 109.46951 * 179.97438 * 11 9 6 41 41 H 1.09003 * 109.46917 * 299.99934 * 11 9 6 42 42 H 1.08998 * 109.47296 * 57.95128 * 12 9 6 43 43 H 1.09000 * 109.47241 * 177.95350 * 12 9 6 44 44 H 0.97002 * 120.00088 * 180.02562 * 16 15 13 45 45 H 1.08000 * 120.00282 * 0.02562 * 22 21 3 46 46 H 1.07995 * 119.99454 * 180.27748 * 23 22 21 47 47 H 1.08001 * 119.99100 * 179.83421 * 24 23 22 48 48 H 1.07997 * 120.00291 * 180.02562 * 25 24 23 49 49 H 1.07994 * 120.00176 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6011 1.9831 -0.8385 5 6 1.6420 2.1242 1.3107 6 7 2.1275 3.5107 1.3087 7 6 1.3384 4.3434 0.3910 8 6 2.2628 5.3298 -0.3253 9 6 2.1219 4.0725 2.6660 10 1 2.6536 3.4004 3.3395 11 6 0.6777 4.2362 3.1442 12 6 2.8137 5.4370 2.6560 13 6 4.2504 5.2688 2.2332 14 1 4.6317 4.2869 1.9950 15 6 5.0776 6.3687 2.1494 16 7 6.3315 6.2218 1.7809 17 14 4.4178 8.0672 2.5608 18 1 4.6162 8.3383 4.0073 19 1 5.1438 9.0870 1.7619 20 1 2.9691 8.1264 2.2402 21 6 3.5413 1.4446 -0.1316 22 6 4.3198 0.8201 0.8249 23 6 5.6967 0.8182 0.7018 24 6 6.2954 1.4487 -0.3729 25 6 5.5171 2.0777 -1.3266 26 6 4.1401 2.0759 -1.2058 27 1 -0.3633 0.5661 0.8577 28 1 -0.3633 0.4599 -0.9190 29 1 -0.3633 -1.0258 0.0612 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.0840 1.5858 2.1491 33 1 0.5564 2.1194 1.4076 34 1 0.8460 3.7072 -0.3445 35 1 0.5867 4.8945 0.9560 36 1 1.7656 5.7122 -1.2167 37 1 2.4980 6.1581 0.3430 38 1 3.1836 4.8220 -0.6125 39 1 0.1849 3.2641 3.1512 40 1 0.6736 4.6526 4.1516 41 1 0.1460 4.9082 2.4706 42 1 2.3036 6.0978 1.9551 43 1 2.7775 5.8701 3.6557 44 1 6.9136 6.9955 1.7223 45 1 3.8522 0.3304 1.6663 46 1 6.3047 0.3265 1.4467 47 1 7.3712 1.4494 -0.4675 48 1 5.9849 2.5699 -2.1664 49 1 3.5320 2.5672 -1.9509 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559769134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:52 Heat of formation + Delta-G solvation = 5.118812 kcal Electronic energy + Delta-G solvation = -24966.080032 eV Core-core repulsion = 21892.123708 eV Total energy + Delta-G solvation = -3073.956325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66241 -39.27678 -36.58933 -34.63750 -32.77949 -31.83735 -31.63671 -31.28188 -29.35548 -27.53573 -25.15997 -24.51593 -23.56731 -23.09556 -22.71971 -20.50585 -20.00056 -18.67715 -17.67664 -17.39665 -16.44934 -16.27145 -16.05951 -15.34225 -15.17840 -14.80068 -14.62577 -14.45420 -14.20548 -14.09368 -14.02834 -13.80583 -13.57813 -13.41119 -13.16173 -12.87836 -12.76282 -12.62414 -12.51143 -12.42715 -12.29537 -11.93395 -11.83385 -11.61211 -11.55841 -11.42467 -11.25587 -11.20166 -11.03437 -10.90879 -10.56331 -9.57935 -9.30264 -8.67959 -8.06252 -6.01343 0.72804 0.73711 1.35699 1.37988 1.47044 2.46376 3.09711 3.18256 3.33703 3.82750 3.98597 4.14250 4.24840 4.27501 4.37214 4.39316 4.42198 4.46542 4.50387 4.53836 4.60614 4.66384 4.73708 4.81597 4.83146 4.91056 4.95686 4.99110 5.04249 5.09538 5.11978 5.16834 5.22007 5.23553 5.30832 5.32288 5.38495 5.43620 5.45285 5.54643 5.61566 5.77390 5.81302 5.84928 5.90235 5.96330 6.36061 6.51662 6.63483 6.71178 7.07326 7.57049 9.10850 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.006945 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.371679 B = 4030.665530 C = 5260.095789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.037 4.037 4 H 0.076 0.924 5 C 0.067 3.933 6 N -0.524 5.524 7 C 0.056 3.944 8 C -0.136 4.136 9 C 0.101 3.899 10 H 0.053 0.947 11 C -0.178 4.178 12 C -0.011 4.011 13 C -0.458 4.458 14 H 0.037 0.963 15 C 0.002 3.998 16 N -0.955 5.955 17 Si 0.926 3.074 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.250 1.250 21 C -0.044 4.044 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.121 4.121 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.006 0.994 44 H 0.254 0.746 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 -11.722 -4.200 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.056 4.056 4 H 0.094 0.906 5 C -0.061 4.061 6 N -0.248 5.248 7 C -0.072 4.072 8 C -0.193 4.193 9 C -0.007 4.007 10 H 0.072 0.928 11 C -0.237 4.237 12 C -0.048 4.048 13 C -0.497 4.497 14 H 0.056 0.944 15 C -0.192 4.192 16 N -0.599 5.599 17 Si 0.752 3.248 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.173 1.173 21 C -0.044 4.044 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.162 4.162 25 C -0.150 4.150 26 C -0.139 4.139 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.024 0.976 44 H 0.063 0.937 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.496 -11.632 -4.392 17.628 hybrid contribution 0.126 1.303 0.519 1.409 sum -12.371 -10.329 -3.873 16.575 Atomic orbital electron populations 1.21807 0.94534 1.02214 1.02088 1.21500 0.96614 0.94150 1.02323 1.20254 0.90335 0.96887 0.98156 0.90615 1.22213 0.97755 0.89064 0.97039 1.61973 1.53908 1.01312 1.07561 1.22109 0.94243 0.95520 0.95286 1.21825 0.99472 0.99065 0.98978 1.21460 0.93995 0.96159 0.89109 0.92846 1.22463 0.97568 1.02072 1.01615 1.19792 0.95097 0.94494 0.95419 1.21099 0.94216 0.93712 1.40639 0.94438 1.25736 0.94986 1.02176 0.96285 1.70090 1.06960 1.30600 1.52239 0.86039 0.79662 0.81011 0.78089 1.20247 1.22166 1.17339 1.19712 0.95837 0.95316 0.93503 1.20998 0.93543 1.00662 0.98767 1.21258 0.95556 1.00242 0.97903 1.21206 0.99970 0.99385 0.95678 1.21235 0.94643 0.99368 0.99707 1.21054 0.94538 0.99390 0.98895 0.92419 0.92527 0.91752 0.91799 0.91711 0.92035 0.92969 0.90723 0.93272 0.92539 0.94349 0.94297 0.91574 0.92270 0.91984 0.95410 0.97558 0.93678 0.85807 0.85666 0.86158 0.86214 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.75 71.98 0.70 -1.64 16 2 C -0.11 -2.11 5.14 30.60 0.16 -1.96 16 3 C -0.04 -0.95 2.01 -11.54 -0.02 -0.97 16 4 H 0.08 1.89 6.50 -2.39 -0.02 1.88 16 5 C 0.07 1.81 3.22 86.30 0.28 2.09 16 6 N -0.52 -18.07 3.51 -871.01 -3.06 -21.13 16 7 C 0.06 1.76 4.89 86.30 0.42 2.18 16 8 C -0.14 -5.08 9.19 71.98 0.66 -4.42 16 9 C 0.10 3.78 2.28 44.91 0.10 3.88 16 10 H 0.05 2.15 7.90 -2.39 -0.02 2.13 16 11 C -0.18 -5.10 8.65 71.98 0.62 -4.48 16 12 C -0.01 -0.49 3.00 29.85 0.09 -0.40 16 13 C -0.46 -25.92 8.53 25.60 0.22 -25.70 16 14 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 15 C 0.00 0.14 5.47 84.65 0.46 0.61 16 16 N -0.96 -61.34 13.96 21.45 0.30 -61.04 16 17 Si 0.93 45.60 27.47 68.60 1.88 47.49 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 20 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 21 C -0.04 -1.38 4.38 -19.86 -0.09 -1.47 16 22 C -0.12 -3.97 8.76 22.27 0.20 -3.77 16 23 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 24 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 25 C -0.13 -4.69 10.05 22.27 0.22 -4.46 16 26 C -0.12 -4.11 9.67 22.27 0.22 -3.90 16 27 H 0.06 0.90 6.42 -2.39 -0.02 0.89 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.25 7.60 -2.39 -0.02 1.24 16 32 H 0.06 1.75 7.05 -2.39 -0.02 1.73 16 33 H 0.05 1.20 5.63 -2.39 -0.01 1.19 16 34 H 0.07 1.97 6.33 -2.39 -0.02 1.95 16 35 H 0.05 1.48 5.14 -2.39 -0.01 1.46 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.65 5.34 -2.39 -0.01 1.64 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.59 7.01 -2.39 -0.02 1.58 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.71 5.83 -2.39 -0.01 1.70 16 42 H 0.03 1.27 4.11 -2.39 -0.01 1.26 16 43 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 44 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.12 3.55 7.17 -2.91 -0.02 3.53 16 46 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 47 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 48 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 49 H 0.12 3.69 7.95 -2.91 -0.02 3.67 16 Total: -1.00 -67.49 367.61 4.65 -62.84 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.84 Total: 25.47 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 4.69 Total: -53.62 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.76 Total: -82.18 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.49 kcal Total: -67.49 4.65 -62.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559769134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.955 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds