Wall clock time and date at job start Tue Mar 31 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47500 * 2 1 4 4 H 1.09002 * 109.46941 * 305.50763 * 3 2 1 5 5 C 1.52995 * 109.47403 * 185.49907 * 3 2 1 6 6 N 1.46899 * 109.46933 * 63.72206 * 5 3 2 7 7 C 1.46908 * 111.00014 * 211.83554 * 6 5 3 8 8 C 1.52999 * 109.47058 * 73.32434 * 7 6 5 9 9 C 1.46890 * 111.00496 * 87.88098 * 6 5 3 10 10 H 1.08994 * 109.47547 * 67.25795 * 9 6 5 11 11 C 1.52998 * 109.47093 * 307.25776 * 9 6 5 12 12 C 1.53008 * 109.47613 * 187.25851 * 9 6 5 13 13 C 1.50700 * 109.47393 * 182.57707 * 12 9 6 14 14 H 1.08000 * 119.99634 * 4.89896 * 13 12 9 15 15 C 1.37868 * 120.00013 * 184.89080 * 13 12 9 16 16 N 1.31517 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00246 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46880 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47044 * 119.99893 * 17 15 13 20 20 H 1.48501 * 109.47393 * 240.00270 * 17 15 13 21 21 C 1.50707 * 109.46761 * 65.50043 * 3 2 1 22 22 C 1.38232 * 120.00109 * 59.72966 * 21 3 2 23 23 C 1.38235 * 119.99954 * 179.78543 * 22 21 3 24 24 C 1.38233 * 119.99885 * 0.44122 * 23 22 21 25 25 C 1.38244 * 120.00036 * 359.81381 * 24 23 22 26 26 C 1.38225 * 119.99589 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.46607 * 299.99783 * 1 2 3 28 28 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47139 * 59.99740 * 1 2 3 30 30 H 1.09004 * 109.47171 * 120.00620 * 2 1 3 31 31 H 1.09003 * 109.47069 * 239.99979 * 2 1 3 32 32 H 1.09004 * 109.47202 * 183.71789 * 5 3 2 33 33 H 1.08999 * 109.47242 * 303.71997 * 5 3 2 34 34 H 1.08996 * 109.47113 * 193.32578 * 7 6 5 35 35 H 1.09000 * 109.46571 * 313.32767 * 7 6 5 36 36 H 1.09004 * 109.47221 * 304.48137 * 8 7 6 37 37 H 1.09001 * 109.47459 * 64.47853 * 8 7 6 38 38 H 1.09001 * 109.46962 * 184.47794 * 8 7 6 39 39 H 1.09003 * 109.47276 * 66.98363 * 11 9 6 40 40 H 1.09001 * 109.47708 * 186.98407 * 11 9 6 41 41 H 1.09006 * 109.47534 * 306.98237 * 11 9 6 42 42 H 1.08994 * 109.46849 * 302.58440 * 12 9 6 43 43 H 1.09011 * 109.46640 * 62.57990 * 12 9 6 44 44 H 0.97007 * 120.00143 * 179.97438 * 16 15 13 45 45 H 1.07999 * 119.99528 * 359.97438 * 22 21 3 46 46 H 1.07994 * 119.99876 * 180.27335 * 23 22 21 47 47 H 1.08003 * 120.00002 * 179.83308 * 24 23 22 48 48 H 1.08002 * 119.99522 * 180.02562 * 25 24 23 49 49 H 1.08008 * 119.99811 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5985 1.9839 -0.8366 5 6 3.5638 1.4446 -0.1382 6 7 3.9383 0.8721 -1.4382 7 6 5.2263 0.1707 -1.3531 8 6 5.0409 -1.1462 -0.5965 9 6 3.9705 1.9074 -2.4798 10 1 4.7870 2.6006 -2.2780 11 6 2.6437 2.6692 -2.4829 12 6 4.1848 1.2508 -3.8451 13 6 4.2811 2.3170 -4.9058 14 1 4.2774 3.3599 -4.6249 15 6 4.3742 1.9612 -6.2345 16 7 4.3783 0.6913 -6.5764 17 14 4.4943 3.2828 -7.5492 18 1 4.4696 4.6222 -6.9083 19 1 5.7638 3.1181 -8.3020 20 1 3.3457 3.1588 -8.4822 21 6 1.6520 2.1124 1.2930 22 6 2.0927 1.5974 2.4977 23 6 1.7404 2.2146 3.6834 24 6 0.9399 3.3413 3.6649 25 6 0.4948 3.8533 2.4603 26 6 0.8508 3.2387 1.2745 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.9332 2.4680 -0.0720 33 1 4.0020 0.8476 0.6615 34 1 5.5943 -0.0364 -2.3580 35 1 5.9459 0.7954 -0.8241 36 1 4.5982 -0.9454 0.3792 37 1 4.3829 -1.8028 -1.1657 38 1 6.0093 -1.6285 -0.4639 39 1 2.5489 3.2375 -1.5575 40 1 2.6184 3.3516 -3.3325 41 1 1.8184 1.9614 -2.5608 42 1 5.1072 0.6704 -3.8284 43 1 3.3450 0.5922 -4.0673 44 1 4.4435 0.4409 -7.5113 45 1 2.7148 0.7147 2.5123 46 1 2.0884 1.8148 4.6244 47 1 0.6624 3.8220 4.5914 48 1 -0.1303 4.7339 2.4459 49 1 0.5027 3.6384 0.3334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559769136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:00 Heat of formation + Delta-G solvation = 10.448826 kcal Electronic energy + Delta-G solvation = -24044.936973 eV Core-core repulsion = 20971.211775 eV Total energy + Delta-G solvation = -3073.725198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.78001 -38.05201 -35.02937 -33.31718 -31.73327 -30.89238 -30.68796 -29.57596 -27.34304 -26.67387 -23.93758 -22.94038 -22.49743 -22.20603 -21.23810 -19.63539 -18.98661 -16.93040 -16.42801 -15.60211 -14.99899 -14.91404 -14.68274 -14.36479 -14.14058 -13.99272 -13.51012 -13.38941 -13.32970 -12.79255 -12.58981 -12.47327 -12.12565 -12.05985 -11.63706 -11.53498 -11.43537 -11.21628 -11.10034 -11.04290 -10.85191 -10.77538 -10.61060 -10.40805 -10.37562 -10.28472 -9.94883 -9.63383 -9.15353 -9.03525 -8.90712 -8.61485 -8.30779 -7.61410 -5.97944 -3.99092 1.39861 1.41232 3.31436 3.39355 3.42747 3.80855 4.37024 4.52922 4.83382 4.93235 5.01571 5.13945 5.16099 5.37314 5.42345 5.44471 5.51636 5.55741 5.56658 5.66086 5.74461 5.83152 5.87101 5.96156 5.98642 6.02465 6.09125 6.12207 6.18090 6.20966 6.24565 6.33663 6.37265 6.45784 6.48080 6.51427 6.55849 6.57064 6.70280 6.77282 6.82250 6.99059 7.04535 7.17486 7.59946 7.68636 7.86660 7.92835 8.13147 8.46957 9.07727 9.63911 11.13338 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.004007 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.504214 B = 6985.861921 C = 7621.312221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.063 4.063 4 H 0.102 0.898 5 C 0.065 3.935 6 N -0.531 5.531 7 C 0.046 3.954 8 C -0.142 4.142 9 C 0.087 3.913 10 H 0.024 0.976 11 C -0.137 4.137 12 C 0.033 3.967 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.059 4.059 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.118 4.118 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.022 0.978 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.014 0.986 43 H 0.028 0.972 44 H 0.259 0.741 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 0.881 18.827 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.081 4.081 4 H 0.119 0.881 5 C -0.063 4.063 6 N -0.255 5.255 7 C -0.082 4.082 8 C -0.200 4.200 9 C -0.020 4.020 10 H 0.042 0.958 11 C -0.194 4.194 12 C -0.004 4.004 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.060 4.060 22 C -0.135 4.135 23 C -0.139 4.139 24 C -0.152 4.152 25 C -0.138 4.138 26 C -0.136 4.136 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.997 0.423 18.536 19.487 hybrid contribution 0.717 1.331 -0.485 1.588 sum -5.280 1.754 18.052 18.890 Atomic orbital electron populations 1.21783 0.96714 1.00919 1.01356 1.21457 0.94774 0.95430 1.02570 1.20753 0.96109 0.96842 0.94406 0.88056 1.22058 0.94456 0.97666 0.92147 1.62064 1.29816 1.29103 1.04518 1.22136 0.90026 0.94386 1.01661 1.21777 1.00825 0.97546 0.99838 1.21841 0.95823 0.91079 0.93280 0.95822 1.22027 0.97561 0.99704 1.00093 1.19161 0.97317 0.95791 0.88136 1.21237 1.49958 0.92971 0.91263 0.92710 1.24973 0.95501 0.95144 0.98652 1.69983 1.50779 1.15376 1.17082 0.86606 0.77580 0.82203 0.82022 1.19815 1.21126 1.21048 1.20053 0.95847 0.94789 0.95289 1.21023 1.00394 1.00060 0.92052 1.21100 0.98643 0.96264 0.97931 1.21064 0.99233 0.97127 0.97751 1.21116 1.00183 0.99843 0.92663 1.21136 0.98491 0.95816 0.98165 0.93405 0.93340 0.92820 0.93111 0.89730 0.94911 0.91992 0.89343 0.96007 0.93411 0.92032 0.93196 0.94656 0.91339 0.92380 0.96792 0.95349 0.93140 0.86347 0.86557 0.86644 0.86451 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.73 37.16 0.36 -1.48 16 2 C -0.10 -1.38 5.24 -26.73 -0.14 -1.52 16 3 C -0.06 -0.85 1.66 -91.77 -0.15 -1.00 16 4 H 0.10 1.50 3.86 -51.93 -0.20 1.30 16 5 C 0.07 0.97 3.56 -3.83 -0.01 0.95 16 6 N -0.53 -9.21 3.55 -226.65 -0.81 -10.02 16 7 C 0.05 0.76 5.49 -3.82 -0.02 0.74 16 8 C -0.14 -1.96 10.03 37.16 0.37 -1.59 16 9 C 0.09 1.78 1.94 -67.71 -0.13 1.65 16 10 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 11 C -0.14 -2.56 7.37 37.16 0.27 -2.29 16 12 C 0.03 0.84 4.45 -27.88 -0.12 0.71 16 13 C -0.52 -14.19 8.19 -34.44 -0.28 -14.47 16 14 H 0.05 1.48 7.12 -52.49 -0.37 1.10 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.06 -0.74 3.79 -104.62 -0.40 -1.14 16 22 C -0.12 -1.36 8.69 -39.58 -0.34 -1.70 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.12 -1.42 9.67 -39.59 -0.38 -1.80 16 27 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.62 7.19 -51.93 -0.37 0.25 16 31 H 0.08 1.28 7.56 -51.93 -0.39 0.89 16 32 H 0.03 0.52 7.43 -51.93 -0.39 0.13 16 33 H 0.06 0.85 5.68 -51.93 -0.30 0.56 16 34 H 0.09 1.69 5.72 -51.93 -0.30 1.39 16 35 H 0.02 0.35 8.03 -51.93 -0.42 -0.07 16 36 H 0.05 0.60 6.63 -51.93 -0.34 0.26 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.58 6.01 -51.93 -0.31 0.26 16 40 H 0.07 1.39 6.70 -51.93 -0.35 1.04 16 41 H 0.06 1.08 7.07 -51.93 -0.37 0.71 16 42 H 0.01 0.37 6.06 -51.93 -0.31 0.06 16 43 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.12 1.27 7.11 -52.49 -0.37 0.90 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.37 7.95 -52.48 -0.42 0.96 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -28.89 371.95 -10.29 -39.18 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.54 Total: 1.04 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -2.27 Total: -26.49 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.07 Total: -35.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.89 -10.29 -39.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559769136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.630 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds