Wall clock time and date at job start Tue Mar 31 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47500 * 2 1 4 4 H 1.09002 * 109.46941 * 305.50763 * 3 2 1 5 5 C 1.52995 * 109.47403 * 185.49907 * 3 2 1 6 6 N 1.46899 * 109.46933 * 63.72206 * 5 3 2 7 7 C 1.46908 * 111.00014 * 211.83554 * 6 5 3 8 8 C 1.52999 * 109.47058 * 73.32434 * 7 6 5 9 9 C 1.46890 * 111.00496 * 87.88098 * 6 5 3 10 10 H 1.08994 * 109.47547 * 67.25795 * 9 6 5 11 11 C 1.52998 * 109.47093 * 307.25776 * 9 6 5 12 12 C 1.53008 * 109.47613 * 187.25851 * 9 6 5 13 13 C 1.50700 * 109.47393 * 182.57707 * 12 9 6 14 14 H 1.08000 * 119.99634 * 4.89896 * 13 12 9 15 15 C 1.37868 * 120.00013 * 184.89080 * 13 12 9 16 16 N 1.31517 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00246 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46880 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47044 * 119.99893 * 17 15 13 20 20 H 1.48501 * 109.47393 * 240.00270 * 17 15 13 21 21 C 1.50707 * 109.46761 * 65.50043 * 3 2 1 22 22 C 1.38232 * 120.00109 * 59.72966 * 21 3 2 23 23 C 1.38235 * 119.99954 * 179.78543 * 22 21 3 24 24 C 1.38233 * 119.99885 * 0.44122 * 23 22 21 25 25 C 1.38244 * 120.00036 * 359.81381 * 24 23 22 26 26 C 1.38225 * 119.99589 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.46607 * 299.99783 * 1 2 3 28 28 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47139 * 59.99740 * 1 2 3 30 30 H 1.09004 * 109.47171 * 120.00620 * 2 1 3 31 31 H 1.09003 * 109.47069 * 239.99979 * 2 1 3 32 32 H 1.09004 * 109.47202 * 183.71789 * 5 3 2 33 33 H 1.08999 * 109.47242 * 303.71997 * 5 3 2 34 34 H 1.08996 * 109.47113 * 193.32578 * 7 6 5 35 35 H 1.09000 * 109.46571 * 313.32767 * 7 6 5 36 36 H 1.09004 * 109.47221 * 304.48137 * 8 7 6 37 37 H 1.09001 * 109.47459 * 64.47853 * 8 7 6 38 38 H 1.09001 * 109.46962 * 184.47794 * 8 7 6 39 39 H 1.09003 * 109.47276 * 66.98363 * 11 9 6 40 40 H 1.09001 * 109.47708 * 186.98407 * 11 9 6 41 41 H 1.09006 * 109.47534 * 306.98237 * 11 9 6 42 42 H 1.08994 * 109.46849 * 302.58440 * 12 9 6 43 43 H 1.09011 * 109.46640 * 62.57990 * 12 9 6 44 44 H 0.97007 * 120.00143 * 179.97438 * 16 15 13 45 45 H 1.07999 * 119.99528 * 359.97438 * 22 21 3 46 46 H 1.07994 * 119.99876 * 180.27335 * 23 22 21 47 47 H 1.08003 * 120.00002 * 179.83308 * 24 23 22 48 48 H 1.08002 * 119.99522 * 180.02562 * 25 24 23 49 49 H 1.08008 * 119.99811 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5985 1.9839 -0.8366 5 6 3.5638 1.4446 -0.1382 6 7 3.9383 0.8721 -1.4382 7 6 5.2263 0.1707 -1.3531 8 6 5.0409 -1.1462 -0.5965 9 6 3.9705 1.9074 -2.4798 10 1 4.7870 2.6006 -2.2780 11 6 2.6437 2.6692 -2.4829 12 6 4.1848 1.2508 -3.8451 13 6 4.2811 2.3170 -4.9058 14 1 4.2774 3.3599 -4.6249 15 6 4.3742 1.9612 -6.2345 16 7 4.3783 0.6913 -6.5764 17 14 4.4943 3.2828 -7.5492 18 1 4.4696 4.6222 -6.9083 19 1 5.7638 3.1181 -8.3020 20 1 3.3457 3.1588 -8.4822 21 6 1.6520 2.1124 1.2930 22 6 2.0927 1.5974 2.4977 23 6 1.7404 2.2146 3.6834 24 6 0.9399 3.3413 3.6649 25 6 0.4948 3.8533 2.4603 26 6 0.8508 3.2387 1.2745 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.9332 2.4680 -0.0720 33 1 4.0020 0.8476 0.6615 34 1 5.5943 -0.0364 -2.3580 35 1 5.9459 0.7954 -0.8241 36 1 4.5982 -0.9454 0.3792 37 1 4.3829 -1.8028 -1.1657 38 1 6.0093 -1.6285 -0.4639 39 1 2.5489 3.2375 -1.5575 40 1 2.6184 3.3516 -3.3325 41 1 1.8184 1.9614 -2.5608 42 1 5.1072 0.6704 -3.8284 43 1 3.3450 0.5922 -4.0673 44 1 4.4435 0.4409 -7.5113 45 1 2.7148 0.7147 2.5123 46 1 2.0884 1.8148 4.6244 47 1 0.6624 3.8220 4.5914 48 1 -0.1303 4.7339 2.4459 49 1 0.5027 3.6384 0.3334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559769136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:59 Heat of formation + Delta-G solvation = -2.626505 kcal Electronic energy + Delta-G solvation = -24045.503962 eV Core-core repulsion = 20971.211775 eV Total energy + Delta-G solvation = -3074.292187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80269 -39.31505 -36.23386 -35.15773 -33.45570 -31.74021 -31.67618 -30.90699 -28.63629 -28.43550 -25.55327 -24.15131 -23.67294 -23.11835 -22.60606 -20.81204 -20.51169 -18.55135 -17.76415 -16.83103 -16.50490 -16.21268 -15.92901 -15.74057 -15.42532 -15.11957 -14.84944 -14.53323 -14.26590 -14.14971 -13.91083 -13.74172 -13.54618 -13.33667 -13.22054 -12.85103 -12.75137 -12.69091 -12.52984 -12.39303 -12.28304 -12.06333 -11.94239 -11.85745 -11.68797 -11.58436 -11.30530 -11.25025 -11.07219 -10.78123 -10.47995 -9.72930 -9.50524 -9.04889 -8.16422 -6.25203 0.55882 0.58982 1.39639 1.40399 1.52793 2.41545 2.93942 3.11733 3.17165 3.84383 3.97495 4.17548 4.20345 4.24718 4.28279 4.32971 4.36997 4.41192 4.46690 4.56008 4.61231 4.66356 4.66872 4.73502 4.75616 4.79494 4.89341 4.99319 4.99874 5.09218 5.16121 5.20177 5.21102 5.25844 5.27353 5.35534 5.40822 5.41383 5.52414 5.55240 5.58079 5.70698 5.71204 5.77985 5.82874 5.90693 6.18898 6.22611 6.43550 6.45648 6.91093 7.42493 8.95730 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.004007 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.504214 B = 6985.861921 C = 7621.312221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.055 4.055 4 H 0.085 0.915 5 C 0.070 3.930 6 N -0.534 5.534 7 C 0.044 3.956 8 C -0.132 4.132 9 C 0.098 3.902 10 H 0.013 0.987 11 C -0.124 4.124 12 C 0.045 3.955 13 C -0.530 4.530 14 H 0.058 0.942 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.958 3.042 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.279 1.279 21 C -0.072 4.072 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.135 4.135 25 C -0.126 4.126 26 C -0.134 4.134 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.030 0.970 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.055 0.945 42 H -0.009 1.009 43 H -0.005 1.005 44 H 0.261 0.739 45 H 0.126 0.874 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.135 0.865 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 1.920 21.063 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C -0.073 4.073 4 H 0.103 0.897 5 C -0.057 4.057 6 N -0.258 5.258 7 C -0.084 4.084 8 C -0.189 4.189 9 C -0.010 4.010 10 H 0.031 0.969 11 C -0.181 4.181 12 C 0.007 3.993 13 C -0.568 4.568 14 H 0.076 0.924 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.783 3.217 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.072 4.072 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.009 0.991 43 H 0.013 0.987 44 H 0.070 0.930 45 H 0.144 0.856 46 H 0.157 0.843 47 H 0.158 0.842 48 H 0.153 0.847 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.456 1.466 20.789 21.818 hybrid contribution 0.864 0.986 -1.103 1.713 sum -5.592 2.452 19.686 20.611 Atomic orbital electron populations 1.21720 0.95971 1.01400 1.01110 1.21380 0.95407 0.95047 1.01910 1.20582 0.94838 0.97059 0.94868 0.89667 1.22098 0.95564 0.97263 0.90817 1.62033 1.30320 1.28173 1.05292 1.22152 0.89856 0.96067 1.00349 1.21690 1.01825 0.95528 0.99872 1.21535 0.96348 0.91230 0.91910 0.96888 1.21899 0.96385 0.99224 1.00598 1.18959 0.94670 0.94807 0.90833 1.21605 1.49523 0.93538 0.92166 0.92374 1.25867 0.95079 0.97378 1.01147 1.70117 1.51810 1.17538 1.17700 0.85502 0.77661 0.79591 0.78919 1.18679 1.20628 1.20483 1.19924 0.97025 0.95382 0.94878 1.21166 1.00641 1.00489 0.92106 1.21411 0.98187 0.96141 0.98455 1.21418 0.98440 0.96901 0.98522 1.21381 1.00200 1.00333 0.92431 1.21254 0.99008 0.96106 0.98850 0.92892 0.92497 0.93756 0.91842 0.92148 0.95662 0.90264 0.92706 0.95183 0.91631 0.93145 0.91340 0.92038 0.93161 0.92621 0.99123 0.98698 0.92974 0.85646 0.84307 0.84230 0.84674 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.73 71.98 0.70 -2.72 16 2 C -0.10 -2.56 5.24 30.59 0.16 -2.39 16 3 C -0.05 -1.45 1.66 -11.54 -0.02 -1.47 16 4 H 0.09 2.52 3.86 -2.39 -0.01 2.51 16 5 C 0.07 2.03 3.56 86.30 0.31 2.33 16 6 N -0.53 -18.84 3.55 -871.00 -3.09 -21.94 16 7 C 0.04 1.47 5.49 86.30 0.47 1.95 16 8 C -0.13 -3.51 10.03 71.98 0.72 -2.79 16 9 C 0.10 4.12 1.94 44.92 0.09 4.21 16 10 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 11 C -0.12 -4.73 7.37 71.98 0.53 -4.20 16 12 C 0.04 2.37 4.45 29.85 0.13 2.50 16 13 C -0.53 -30.01 8.19 25.60 0.21 -29.80 16 14 H 0.06 3.19 7.12 -2.91 -0.02 3.17 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.93 -56.97 13.29 21.44 0.28 -56.68 16 17 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C -0.07 -1.67 3.79 -19.86 -0.08 -1.75 16 22 C -0.13 -2.61 8.69 22.27 0.19 -2.41 16 23 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 24 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 25 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 26 C -0.13 -3.03 9.67 22.27 0.22 -2.81 16 27 H 0.05 1.19 7.40 -2.39 -0.02 1.18 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.45 7.19 -2.38 -0.02 1.43 16 31 H 0.06 1.84 7.56 -2.39 -0.02 1.83 16 32 H 0.03 0.77 7.43 -2.38 -0.02 0.76 16 33 H 0.08 2.02 5.68 -2.39 -0.01 2.00 16 34 H 0.05 2.22 5.72 -2.39 -0.01 2.21 16 35 H 0.03 0.96 8.03 -2.39 -0.02 0.94 16 36 H 0.06 1.51 6.63 -2.38 -0.02 1.49 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 2.00 6.01 -2.39 -0.01 1.99 16 40 H 0.05 2.08 6.70 -2.39 -0.02 2.06 16 41 H 0.05 2.13 7.07 -2.38 -0.02 2.11 16 42 H -0.01 -0.54 6.06 -2.39 -0.01 -0.55 16 43 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 44 H 0.26 15.05 8.31 -92.70 -0.77 14.27 16 45 H 0.13 2.34 7.11 -2.91 -0.02 2.32 16 46 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 49 H 0.12 2.61 7.95 -2.91 -0.02 2.59 16 Total: -1.00 -63.67 371.95 4.88 -58.78 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.90 Total: 18.20 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 4.77 Total: -44.96 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.81 Total: -78.62 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.67 4.88 -58.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559769136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.155 kcal (2) G-P(sol) polarization free energy of solvation -63.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds