Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47498 * 2 1 4 4 H 1.09002 * 109.47079 * 304.76544 * 3 2 1 5 5 C 1.53006 * 109.47044 * 184.76749 * 3 2 1 6 6 N 1.46893 * 109.47303 * 65.71555 * 5 3 2 7 7 C 1.46899 * 111.00102 * 199.75720 * 6 5 3 8 8 C 1.52995 * 109.47421 * 72.27363 * 7 6 5 9 9 C 1.46899 * 111.00310 * 75.79894 * 6 5 3 10 10 H 1.08999 * 109.46988 * 310.00693 * 9 6 5 11 11 C 1.53005 * 109.46974 * 69.99746 * 9 6 5 12 12 C 1.52998 * 109.47356 * 189.99912 * 9 6 5 13 13 C 1.50703 * 109.47027 * 65.00173 * 12 9 6 14 14 H 1.07994 * 119.99837 * 359.97438 * 13 12 9 15 15 C 1.37878 * 120.00016 * 179.97438 * 13 12 9 16 16 N 1.31517 * 119.99761 * 359.73307 * 15 13 12 17 17 Si 1.86795 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47333 * 179.72911 * 17 15 13 19 19 H 1.48499 * 109.47532 * 299.73198 * 17 15 13 20 20 H 1.48507 * 109.46838 * 59.73186 * 17 15 13 21 21 C 1.50698 * 109.47090 * 64.76745 * 3 2 1 22 22 C 1.38227 * 120.00175 * 59.72664 * 21 3 2 23 23 C 1.38236 * 120.00103 * 179.78788 * 22 21 3 24 24 C 1.38231 * 119.99800 * 0.44398 * 23 22 21 25 25 C 1.38233 * 120.00275 * 359.80547 * 24 23 22 26 26 C 1.38233 * 119.99666 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46640 * 300.00202 * 1 2 3 29 29 H 1.09003 * 109.46965 * 59.99721 * 1 2 3 30 30 H 1.09002 * 109.46640 * 239.99797 * 2 1 3 31 31 H 1.09003 * 109.46965 * 120.00279 * 2 1 3 32 32 H 1.08997 * 109.46581 * 305.71403 * 5 3 2 33 33 H 1.08999 * 109.46798 * 185.72007 * 5 3 2 34 34 H 1.09004 * 109.47216 * 192.27715 * 7 6 5 35 35 H 1.09006 * 109.46815 * 312.27311 * 7 6 5 36 36 H 1.09003 * 109.47317 * 181.77046 * 8 7 6 37 37 H 1.09000 * 109.46976 * 301.76546 * 8 7 6 38 38 H 1.08994 * 109.47387 * 61.76802 * 8 7 6 39 39 H 1.09003 * 109.47310 * 300.00690 * 11 9 6 40 40 H 1.09000 * 109.47033 * 60.00104 * 11 9 6 41 41 H 1.08997 * 109.47260 * 180.02562 * 11 9 6 42 42 H 1.08992 * 109.47182 * 305.00218 * 12 9 6 43 43 H 1.08998 * 109.47082 * 184.99895 * 12 9 6 44 44 H 0.97002 * 119.99803 * 0.26485 * 16 15 13 45 45 H 1.08004 * 119.99986 * 359.97438 * 22 21 3 46 46 H 1.08001 * 120.00250 * 180.27431 * 23 22 21 47 47 H 1.08001 * 120.00064 * 179.83486 * 24 23 22 48 48 H 1.08001 * 120.00353 * 180.02562 * 25 24 23 49 49 H 1.08005 * 120.00002 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6087 1.9803 -0.8442 5 6 3.5654 1.4439 -0.1199 6 7 3.9540 0.9101 -1.4320 7 6 5.3518 0.4583 -1.4236 8 6 5.4657 -0.8326 -0.6103 9 6 3.7276 1.9016 -2.4920 10 1 2.7158 2.2983 -2.4083 11 6 4.7363 3.0429 -2.3465 12 6 3.9035 1.2366 -3.8586 13 6 2.8319 0.1948 -4.0519 14 1 2.0991 0.0238 -3.2773 15 6 2.7871 -0.5401 -5.2176 16 7 3.6765 -0.3282 -6.1631 17 14 1.4593 -1.8320 -5.4569 18 1 1.6256 -2.4724 -6.7863 19 1 1.5735 -2.8622 -4.3935 20 1 0.1232 -1.1884 -5.3812 21 6 1.6365 2.1179 1.2852 22 6 2.0626 1.6081 2.4974 23 6 1.6960 2.2303 3.6761 24 6 0.8958 3.3570 3.6430 25 6 0.4655 3.8638 2.4311 26 6 0.8358 3.2443 1.2522 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9922 0.8215 0.6665 33 1 3.9368 2.4636 -0.0180 34 1 5.6801 0.2735 -2.4465 35 1 5.9796 1.2277 -0.9740 36 1 6.5078 -1.1507 -0.5777 37 1 5.1081 -0.6556 0.4040 38 1 4.8627 -1.6109 -1.0777 39 1 4.6110 3.5167 -1.3729 40 1 5.7481 2.6464 -2.4301 41 1 4.5680 3.7789 -3.1327 42 1 4.8839 0.7631 -3.9087 43 1 3.8233 1.9900 -4.6422 44 1 4.3662 0.3424 -6.0386 45 1 2.6844 0.7254 2.5234 46 1 2.0326 1.8346 4.6230 47 1 0.6072 3.8416 4.5641 48 1 -0.1594 4.7444 2.4053 49 1 0.4999 3.6405 0.3053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559769137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = 2.641433 kcal Electronic energy + Delta-G solvation = -24356.817939 eV Core-core repulsion = 21282.754187 eV Total energy + Delta-G solvation = -3074.063752 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.71886 -38.18327 -35.14865 -33.24470 -31.48928 -30.89016 -30.61270 -29.56715 -26.94257 -26.74226 -23.54025 -22.82903 -22.79467 -22.20998 -21.68933 -19.91235 -18.31932 -16.93156 -16.57167 -15.56628 -15.29446 -14.99163 -14.53783 -14.36564 -13.84491 -13.65417 -13.55446 -13.39100 -13.30508 -13.12109 -12.47437 -12.45870 -12.34516 -11.85611 -11.69993 -11.43928 -11.35659 -11.31727 -11.17787 -11.04470 -10.92391 -10.68828 -10.56802 -10.45259 -10.23948 -10.19126 -10.01286 -9.81523 -9.36047 -8.90228 -8.61211 -8.41153 -8.17721 -7.45580 -6.17999 -3.83083 1.40499 1.41774 3.52636 3.54774 3.72798 3.81644 4.44193 4.67467 4.83561 4.94014 5.02403 5.15866 5.17694 5.45751 5.49072 5.54782 5.56276 5.58422 5.59964 5.66635 5.71142 5.80774 5.86312 5.89078 5.97107 5.98230 6.01883 6.04361 6.09713 6.17302 6.26568 6.28597 6.42283 6.45483 6.48581 6.50700 6.53724 6.59358 6.64767 6.70628 6.82551 6.90650 6.91512 7.05322 7.33900 7.49392 7.87507 7.96095 8.43074 8.70526 9.07391 9.85404 11.22093 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.004870 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.117410 B = 5747.585962 C = 6322.579356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.043 4.043 4 H 0.080 0.920 5 C 0.059 3.941 6 N -0.505 5.505 7 C 0.053 3.947 8 C -0.143 4.143 9 C 0.093 3.907 10 H 0.070 0.930 11 C -0.186 4.186 12 C 0.017 3.983 13 C -0.566 4.566 14 H 0.055 0.945 15 C 0.009 3.991 16 N -0.924 5.924 17 Si 1.064 2.936 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.291 1.291 21 C -0.059 4.059 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.118 4.118 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.009 0.991 43 H 0.006 0.994 44 H 0.265 0.735 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 5.347 18.106 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.069 4.069 6 N -0.228 5.228 7 C -0.075 4.075 8 C -0.201 4.201 9 C -0.015 4.015 10 H 0.088 0.912 11 C -0.245 4.245 12 C -0.020 4.020 13 C -0.605 4.605 14 H 0.073 0.927 15 C -0.193 4.193 16 N -0.562 5.562 17 Si 0.893 3.107 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.217 1.217 21 C -0.059 4.059 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.152 4.152 25 C -0.138 4.138 26 C -0.136 4.136 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.024 0.976 44 H 0.075 0.925 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.309 3.788 16.933 17.664 hybrid contribution 1.089 1.986 1.346 2.635 sum -2.220 5.774 18.279 19.298 Atomic orbital electron populations 1.21775 0.96728 1.01022 1.01194 1.21485 0.94846 0.95048 1.03047 1.20224 0.95702 0.96772 0.93530 0.90142 1.22155 0.94347 0.97716 0.92684 1.62044 1.20501 1.38126 1.02136 1.22026 0.88908 0.95279 1.01294 1.21762 1.00443 0.98514 0.99342 1.21766 0.96998 0.89025 0.93698 0.91162 1.22548 1.01043 1.00446 1.00426 1.19321 0.97497 0.95516 0.89618 1.21928 1.14000 1.20611 1.03922 0.92667 1.25707 1.00678 1.00001 0.92945 1.70792 1.16185 1.34386 1.34885 0.83610 0.75214 0.76010 0.75832 1.21233 1.21569 1.21738 1.20030 0.95908 0.94718 0.95251 1.21019 1.00380 1.00011 0.91972 1.21102 0.98608 0.96220 0.97986 1.21059 0.99285 0.97170 0.97663 1.21104 1.00197 0.99869 0.92648 1.21134 0.98459 0.95833 0.98223 0.93255 0.93605 0.92742 0.88972 0.93082 0.91494 0.95312 0.89894 0.96325 0.93377 0.93601 0.91560 0.93938 0.93026 0.92745 0.97254 0.97599 0.92489 0.86251 0.86517 0.86635 0.86475 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.73 37.16 0.36 -1.76 16 2 C -0.11 -1.61 5.24 -26.73 -0.14 -1.75 16 3 C -0.04 -0.64 2.10 -91.77 -0.19 -0.83 16 4 H 0.08 1.32 6.38 -51.93 -0.33 0.99 16 5 C 0.06 0.91 3.83 -3.82 -0.01 0.89 16 6 N -0.51 -9.15 3.46 -226.65 -0.78 -9.93 16 7 C 0.05 0.91 4.40 -3.83 -0.02 0.89 16 8 C -0.14 -2.17 10.01 37.16 0.37 -1.80 16 9 C 0.09 1.86 2.17 -67.71 -0.15 1.71 16 10 H 0.07 1.45 6.56 -51.93 -0.34 1.11 16 11 C -0.19 -3.20 8.52 37.16 0.32 -2.89 16 12 C 0.02 0.43 3.70 -27.88 -0.10 0.33 16 13 C -0.57 -15.55 8.84 -34.44 -0.30 -15.86 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.01 0.25 5.46 -17.82 -0.10 0.15 16 16 N -0.92 -28.38 13.65 55.43 0.76 -27.62 16 17 Si 1.06 25.73 29.90 -169.99 -5.08 20.65 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.06 -0.77 3.75 -104.63 -0.39 -1.16 16 22 C -0.12 -1.40 8.72 -39.59 -0.35 -1.74 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 24 C -0.13 -1.40 10.05 -39.59 -0.40 -1.79 16 25 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 26 C -0.12 -1.48 9.67 -39.58 -0.38 -1.86 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.61 7.37 -51.93 -0.38 0.23 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.68 7.65 -51.93 -0.40 1.28 16 31 H 0.05 0.71 7.22 -51.93 -0.37 0.33 16 32 H 0.07 0.96 5.71 -51.93 -0.30 0.66 16 33 H 0.03 0.45 6.17 -51.93 -0.32 0.13 16 34 H 0.08 1.65 5.86 -51.93 -0.30 1.35 16 35 H 0.02 0.30 7.15 -51.93 -0.37 -0.07 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.63 6.51 -51.93 -0.34 0.29 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.04 0.67 6.45 -51.93 -0.34 0.33 16 40 H 0.05 0.88 6.70 -51.93 -0.35 0.53 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.01 0.25 5.97 -51.93 -0.31 -0.06 16 43 H 0.01 0.16 8.00 -51.93 -0.42 -0.26 16 44 H 0.26 8.10 7.22 -40.82 -0.29 7.81 16 45 H 0.12 1.35 7.14 -52.48 -0.37 0.98 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 49 H 0.12 1.43 7.95 -52.48 -0.42 1.01 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -29.62 373.25 -10.30 -39.92 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.54 Total: 2.26 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -2.28 Total: -30.91 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.03 Total: -37.55 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.62 -10.30 -39.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559769137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.562 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds