Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47498 * 2 1 4 4 H 1.09002 * 109.47079 * 304.76544 * 3 2 1 5 5 C 1.53006 * 109.47044 * 184.76749 * 3 2 1 6 6 N 1.46893 * 109.47303 * 65.71555 * 5 3 2 7 7 C 1.46899 * 111.00102 * 199.75720 * 6 5 3 8 8 C 1.52995 * 109.47421 * 72.27363 * 7 6 5 9 9 C 1.46899 * 111.00310 * 75.79894 * 6 5 3 10 10 H 1.08999 * 109.46988 * 310.00693 * 9 6 5 11 11 C 1.53005 * 109.46974 * 69.99746 * 9 6 5 12 12 C 1.52998 * 109.47356 * 189.99912 * 9 6 5 13 13 C 1.50703 * 109.47027 * 65.00173 * 12 9 6 14 14 H 1.07994 * 119.99837 * 359.97438 * 13 12 9 15 15 C 1.37878 * 120.00016 * 179.97438 * 13 12 9 16 16 N 1.31517 * 119.99761 * 359.73307 * 15 13 12 17 17 Si 1.86795 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47333 * 179.72911 * 17 15 13 19 19 H 1.48499 * 109.47532 * 299.73198 * 17 15 13 20 20 H 1.48507 * 109.46838 * 59.73186 * 17 15 13 21 21 C 1.50698 * 109.47090 * 64.76745 * 3 2 1 22 22 C 1.38227 * 120.00175 * 59.72664 * 21 3 2 23 23 C 1.38236 * 120.00103 * 179.78788 * 22 21 3 24 24 C 1.38231 * 119.99800 * 0.44398 * 23 22 21 25 25 C 1.38233 * 120.00275 * 359.80547 * 24 23 22 26 26 C 1.38233 * 119.99666 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46640 * 300.00202 * 1 2 3 29 29 H 1.09003 * 109.46965 * 59.99721 * 1 2 3 30 30 H 1.09002 * 109.46640 * 239.99797 * 2 1 3 31 31 H 1.09003 * 109.46965 * 120.00279 * 2 1 3 32 32 H 1.08997 * 109.46581 * 305.71403 * 5 3 2 33 33 H 1.08999 * 109.46798 * 185.72007 * 5 3 2 34 34 H 1.09004 * 109.47216 * 192.27715 * 7 6 5 35 35 H 1.09006 * 109.46815 * 312.27311 * 7 6 5 36 36 H 1.09003 * 109.47317 * 181.77046 * 8 7 6 37 37 H 1.09000 * 109.46976 * 301.76546 * 8 7 6 38 38 H 1.08994 * 109.47387 * 61.76802 * 8 7 6 39 39 H 1.09003 * 109.47310 * 300.00690 * 11 9 6 40 40 H 1.09000 * 109.47033 * 60.00104 * 11 9 6 41 41 H 1.08997 * 109.47260 * 180.02562 * 11 9 6 42 42 H 1.08992 * 109.47182 * 305.00218 * 12 9 6 43 43 H 1.08998 * 109.47082 * 184.99895 * 12 9 6 44 44 H 0.97002 * 119.99803 * 0.26485 * 16 15 13 45 45 H 1.08004 * 119.99986 * 359.97438 * 22 21 3 46 46 H 1.08001 * 120.00250 * 180.27431 * 23 22 21 47 47 H 1.08001 * 120.00064 * 179.83486 * 24 23 22 48 48 H 1.08001 * 120.00353 * 180.02562 * 25 24 23 49 49 H 1.08005 * 120.00002 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6087 1.9803 -0.8442 5 6 3.5654 1.4439 -0.1199 6 7 3.9540 0.9101 -1.4320 7 6 5.3518 0.4583 -1.4236 8 6 5.4657 -0.8326 -0.6103 9 6 3.7276 1.9016 -2.4920 10 1 2.7158 2.2983 -2.4083 11 6 4.7363 3.0429 -2.3465 12 6 3.9035 1.2366 -3.8586 13 6 2.8319 0.1948 -4.0519 14 1 2.0991 0.0238 -3.2773 15 6 2.7871 -0.5401 -5.2176 16 7 3.6765 -0.3282 -6.1631 17 14 1.4593 -1.8320 -5.4569 18 1 1.6256 -2.4724 -6.7863 19 1 1.5735 -2.8622 -4.3935 20 1 0.1232 -1.1884 -5.3812 21 6 1.6365 2.1179 1.2852 22 6 2.0626 1.6081 2.4974 23 6 1.6960 2.2303 3.6761 24 6 0.8958 3.3570 3.6430 25 6 0.4655 3.8638 2.4311 26 6 0.8358 3.2443 1.2522 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9922 0.8215 0.6665 33 1 3.9368 2.4636 -0.0180 34 1 5.6801 0.2735 -2.4465 35 1 5.9796 1.2277 -0.9740 36 1 6.5078 -1.1507 -0.5777 37 1 5.1081 -0.6556 0.4040 38 1 4.8627 -1.6109 -1.0777 39 1 4.6110 3.5167 -1.3729 40 1 5.7481 2.6464 -2.4301 41 1 4.5680 3.7789 -3.1327 42 1 4.8839 0.7631 -3.9087 43 1 3.8233 1.9900 -4.6422 44 1 4.3662 0.3424 -6.0386 45 1 2.6844 0.7254 2.5234 46 1 2.0326 1.8346 4.6230 47 1 0.6072 3.8416 4.5641 48 1 -0.1594 4.7444 2.4053 49 1 0.4999 3.6405 0.3053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559769137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = -10.988203 kcal Electronic energy + Delta-G solvation = -24357.408965 eV Core-core repulsion = 21282.754187 eV Total energy + Delta-G solvation = -3074.654777 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78150 -39.48627 -36.38513 -35.21581 -33.12363 -31.75458 -31.68383 -30.82633 -28.81442 -27.99033 -25.20460 -24.36709 -23.78281 -23.46644 -22.96911 -21.09966 -19.78229 -18.73986 -17.77198 -16.92986 -16.54526 -16.09977 -15.76140 -15.56531 -15.49714 -15.08838 -15.01138 -14.84438 -14.55164 -14.18234 -13.83049 -13.54196 -13.38103 -13.34805 -13.17545 -13.02911 -12.95548 -12.64336 -12.59170 -12.49615 -12.27204 -12.03259 -11.96382 -11.88341 -11.74432 -11.65113 -11.39332 -11.19321 -11.06458 -10.54001 -10.40585 -9.75549 -9.52268 -8.88309 -8.50543 -6.15222 0.52988 0.56360 1.54183 1.62606 1.80737 2.63978 2.92300 3.09140 3.33686 3.76600 3.92780 4.11046 4.15974 4.21118 4.24301 4.25385 4.29281 4.35018 4.40425 4.44713 4.55551 4.57260 4.64832 4.68224 4.68731 4.71812 4.81022 4.91725 4.94363 5.02563 5.06593 5.09587 5.12224 5.17718 5.19738 5.24562 5.28102 5.33978 5.42290 5.45862 5.55483 5.56703 5.68066 5.69680 5.86280 6.17996 6.19364 6.39546 6.44742 6.48658 6.79567 7.61319 8.90128 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.004870 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.117410 B = 5747.585962 C = 6322.579356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.035 4.035 4 H 0.055 0.945 5 C 0.066 3.934 6 N -0.520 5.520 7 C 0.053 3.947 8 C -0.135 4.135 9 C 0.103 3.897 10 H 0.060 0.940 11 C -0.175 4.175 12 C 0.022 3.978 13 C -0.564 4.564 14 H 0.052 0.948 15 C -0.045 4.045 16 N -0.953 5.953 17 Si 1.108 2.892 18 H -0.290 1.290 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.071 4.071 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.135 4.135 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.053 0.947 42 H -0.007 1.007 43 H -0.019 1.019 44 H 0.251 0.749 45 H 0.126 0.874 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.136 0.864 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 5.534 21.413 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.054 4.054 4 H 0.074 0.926 5 C -0.061 4.061 6 N -0.243 5.243 7 C -0.074 4.074 8 C -0.192 4.192 9 C -0.006 4.006 10 H 0.078 0.922 11 C -0.234 4.234 12 C -0.015 4.015 13 C -0.602 4.602 14 H 0.071 0.929 15 C -0.241 4.241 16 N -0.593 5.593 17 Si 0.931 3.069 18 H -0.216 1.216 19 H -0.198 1.198 20 H -0.199 1.199 21 C -0.072 4.072 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.153 4.153 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.011 0.989 43 H -0.001 1.001 44 H 0.060 0.940 45 H 0.144 0.856 46 H 0.159 0.841 47 H 0.160 0.840 48 H 0.154 0.846 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.973 3.991 20.265 21.033 hybrid contribution 1.300 1.982 0.385 2.402 sum -2.673 5.974 20.650 21.662 Atomic orbital electron populations 1.21712 0.96061 1.01381 1.00975 1.21385 0.95429 0.95158 1.01925 1.20057 0.95066 0.96361 0.93924 0.92619 1.22167 0.94858 0.97891 0.91205 1.61965 1.21246 1.38026 1.03083 1.22003 0.88660 0.96930 0.99852 1.21693 1.01418 0.96491 0.99622 1.21439 0.97374 0.89888 0.91877 0.92167 1.22408 1.00041 0.99334 1.01636 1.19215 0.95823 0.94464 0.92021 1.22225 1.14066 1.20533 1.03418 0.92924 1.27097 1.01996 1.01962 0.93012 1.70924 1.17176 1.35156 1.35997 0.83036 0.73577 0.74291 0.75964 1.21563 1.19806 1.19865 1.19847 0.97247 0.95382 0.94676 1.21145 1.00649 1.00428 0.91969 1.21420 0.98049 0.96040 0.98489 1.21428 0.98357 0.96874 0.98424 1.21367 1.00146 1.00333 0.92348 1.21227 0.99029 0.96174 0.98874 0.92574 0.92539 0.94178 0.92507 0.91556 0.89894 0.95091 0.93347 0.94554 0.91417 0.91603 0.93832 0.91756 0.92950 0.92793 0.98908 1.00070 0.93965 0.85612 0.84109 0.84025 0.84606 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.73 71.98 0.70 -3.29 16 2 C -0.10 -3.01 5.24 30.59 0.16 -2.85 16 3 C -0.04 -1.02 2.10 -11.54 -0.02 -1.04 16 4 H 0.06 1.87 6.38 -2.39 -0.02 1.86 16 5 C 0.07 1.95 3.83 86.31 0.33 2.28 16 6 N -0.52 -18.88 3.46 -870.99 -3.01 -21.89 16 7 C 0.05 1.83 4.40 86.30 0.38 2.21 16 8 C -0.13 -3.93 10.01 71.98 0.72 -3.21 16 9 C 0.10 4.19 2.17 44.92 0.10 4.29 16 10 H 0.06 2.57 6.56 -2.39 -0.02 2.55 16 11 C -0.18 -6.00 8.52 71.98 0.61 -5.39 16 12 C 0.02 1.13 3.70 29.85 0.11 1.24 16 13 C -0.56 -32.00 8.84 25.60 0.23 -31.78 16 14 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 15 C -0.05 -2.67 5.46 84.65 0.46 -2.20 16 16 N -0.95 -60.44 13.65 21.45 0.29 -60.15 16 17 Si 1.11 52.39 29.90 68.60 2.05 54.44 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C -0.07 -1.75 3.75 -19.87 -0.07 -1.83 16 22 C -0.12 -2.65 8.72 22.27 0.19 -2.46 16 23 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 25 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 26 C -0.13 -3.19 9.67 22.27 0.22 -2.97 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.43 7.37 -2.39 -0.02 1.42 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 2.09 7.65 -2.39 -0.02 2.07 16 31 H 0.07 1.74 7.22 -2.39 -0.02 1.72 16 32 H 0.08 2.18 5.71 -2.39 -0.01 2.17 16 33 H 0.03 0.91 6.17 -2.39 -0.01 0.89 16 34 H 0.05 1.99 5.86 -2.38 -0.01 1.98 16 35 H 0.04 1.11 7.15 -2.38 -0.02 1.10 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.64 6.51 -2.39 -0.02 1.63 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.92 6.45 -2.39 -0.02 1.91 16 40 H 0.05 1.77 6.70 -2.39 -0.02 1.76 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H -0.01 -0.40 5.97 -2.39 -0.01 -0.41 16 43 H -0.02 -1.06 8.00 -2.39 -0.02 -1.08 16 44 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 45 H 0.13 2.46 7.14 -2.91 -0.02 2.44 16 46 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 49 H 0.11 2.71 7.95 -2.91 -0.02 2.69 16 Total: -1.00 -65.65 373.25 5.11 -60.55 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.99 Total: 20.29 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 4.78 Total: -53.23 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.72 Total: -82.04 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -65.65 5.11 -60.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559769137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.558 kcal (2) G-P(sol) polarization free energy of solvation -65.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds