Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47301 * 2 1 4 4 C 1.52998 * 109.47075 * 239.99064 * 2 1 3 5 5 C 1.52998 * 109.47585 * 294.39591 * 4 2 1 6 6 H 1.08990 * 109.47411 * 54.10852 * 5 4 2 7 7 C 1.53010 * 109.46679 * 294.11010 * 5 4 2 8 8 C 1.53002 * 109.47229 * 174.11720 * 5 4 2 9 9 C 1.53004 * 109.46879 * 184.99793 * 8 5 4 10 10 H 1.09001 * 109.47016 * 304.99250 * 9 8 5 11 11 C 1.53004 * 109.46803 * 184.99426 * 9 8 5 12 12 N 1.46500 * 109.47380 * 64.99511 * 9 8 5 13 13 C 1.38849 * 119.99920 * 204.99799 * 12 9 8 14 14 C 1.39567 * 119.84517 * 359.72837 * 13 12 9 15 15 C 1.36336 * 120.16048 * 179.71741 * 14 13 12 16 16 C 1.40890 * 119.83778 * 0.55379 * 15 14 13 17 17 C 1.41132 * 120.15459 * 179.70007 * 16 15 14 18 18 H 1.08002 * 119.99923 * 207.54122 * 17 16 15 19 19 C 1.39861 * 120.00204 * 27.53607 * 17 16 15 20 20 N 1.30903 * 120.00026 * 11.97051 * 19 17 16 21 21 Si 1.86803 * 120.00231 * 191.96349 * 19 17 16 22 22 H 1.48502 * 109.47047 * 89.99872 * 21 19 17 23 23 H 1.48492 * 109.47359 * 210.00221 * 21 19 17 24 24 H 1.48501 * 109.47133 * 330.00434 * 21 19 17 25 25 C 1.40888 * 119.68721 * 359.71692 * 16 15 14 26 26 C 1.36335 * 119.83613 * 0.02562 * 25 16 15 27 27 H 1.09006 * 109.46554 * 60.00247 * 1 2 3 28 28 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47032 * 300.00416 * 1 2 3 30 30 H 1.09006 * 109.46554 * 119.99753 * 2 1 3 31 31 H 1.09007 * 109.46887 * 295.20374 * 3 2 1 32 32 H 1.08996 * 109.47992 * 55.20475 * 3 2 1 33 33 H 1.09003 * 109.47369 * 175.21288 * 3 2 1 34 34 H 1.09001 * 109.46751 * 54.39423 * 4 2 1 35 35 H 1.09002 * 109.47084 * 174.38814 * 4 2 1 36 36 H 1.08997 * 109.46983 * 295.78719 * 7 5 4 37 37 H 1.09000 * 109.46718 * 55.79070 * 7 5 4 38 38 H 1.08997 * 109.46748 * 175.79258 * 7 5 4 39 39 H 1.09004 * 109.46609 * 304.99015 * 8 5 4 40 40 H 1.08994 * 109.47478 * 64.99303 * 8 5 4 41 41 H 1.09000 * 109.46862 * 179.97438 * 11 9 8 42 42 H 1.09000 * 109.47375 * 300.00239 * 11 9 8 43 43 H 1.09002 * 109.46758 * 59.99711 * 11 9 8 44 44 H 0.97011 * 119.99806 * 25.00102 * 12 9 8 45 45 H 1.07996 * 119.91333 * 359.97438 * 14 13 12 46 46 H 1.07996 * 120.07888 * 180.27580 * 15 14 13 47 47 H 0.97003 * 120.00016 * 180.02562 * 20 19 17 48 48 H 1.07997 * 120.07956 * 179.97438 * 25 16 15 49 49 H 1.07998 * 119.91979 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6484 -2.1988 -1.1805 6 1 0.5731 -2.2828 -1.0238 7 6 2.3868 -2.8688 -0.0199 8 6 2.0281 -2.8886 -2.4924 9 6 1.5253 -4.3335 -2.4730 10 1 1.9104 -4.8404 -1.5882 11 6 2.0115 -5.0596 -3.7289 12 7 0.0606 -4.3406 -2.4411 13 6 -0.6170 -5.4307 -1.9117 14 6 0.1004 -6.5205 -1.4160 15 6 -0.5583 -7.5918 -0.8895 16 6 -1.9668 -7.6021 -0.8572 17 6 -2.6555 -8.7104 -0.3194 18 1 -3.6504 -8.9480 -0.6661 19 6 -2.0497 -9.5011 0.6624 20 7 -0.9551 -9.0897 1.2507 21 14 -2.8027 -11.1442 1.1344 22 1 -2.2350 -12.2140 0.2750 23 1 -2.4974 -11.4381 2.5575 24 1 -4.2746 -11.0866 0.9456 25 6 -2.6844 -6.5009 -1.3645 26 6 -2.0124 -5.4342 -1.8833 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7486 1.9308 -0.9299 32 1 1.6084 1.9806 0.8438 33 1 3.1267 1.4436 0.0858 34 1 1.5970 -0.2689 -2.1363 35 1 3.1254 -0.6352 -1.3008 36 1 3.4593 -2.8510 -0.2130 37 1 2.1749 -2.3310 0.9042 38 1 2.0519 -3.9016 0.0758 39 1 1.5725 -2.3566 -3.3276 40 1 3.1121 -2.8826 -2.6056 41 1 1.6537 -6.0891 -3.7149 42 1 1.6264 -4.5527 -4.6138 43 1 3.1013 -5.0543 -3.7527 44 1 -0.4358 -3.5836 -2.7899 45 1 1.1799 -6.5133 -1.4459 46 1 -0.0018 -8.4325 -0.5022 47 1 -0.5347 -9.6382 1.9313 48 1 -3.7642 -6.5023 -1.3433 49 1 -2.5612 -4.5895 -2.2729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560742376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -17.714077 kcal Electronic energy + Delta-G solvation = -23289.620416 eV Core-core repulsion = 20214.673982 eV Total energy + Delta-G solvation = -3074.946433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.77048 -37.60698 -35.88925 -33.72147 -32.54801 -30.50897 -29.40744 -27.93898 -27.26749 -26.79837 -26.32669 -24.24335 -21.96808 -21.12095 -20.43588 -19.47652 -19.14432 -17.15582 -16.38869 -15.56120 -15.24403 -14.86804 -14.76241 -14.04090 -13.99649 -13.73198 -13.37345 -12.97556 -12.76499 -12.54422 -12.45907 -12.39545 -12.16935 -11.89404 -11.86692 -11.60054 -11.57704 -11.42254 -11.24335 -11.17850 -11.07977 -11.00442 -10.71307 -10.67357 -10.43210 -10.32777 -10.19184 -9.94408 -9.62520 -9.20708 -9.18077 -8.48701 -7.43839 -6.52920 -6.29411 -4.00225 2.96089 3.14839 3.18234 3.21514 3.39893 4.10117 4.38032 4.58636 4.77106 4.83866 4.84938 5.05151 5.18344 5.21729 5.48693 5.51938 5.55712 5.56805 5.64246 5.70057 5.74922 5.80024 5.84705 5.88257 5.90213 5.99521 6.02816 6.04734 6.07248 6.18765 6.22792 6.28598 6.31403 6.32457 6.42072 6.54893 6.59692 6.62810 6.98729 7.02546 7.25700 7.42011 7.62624 7.75272 7.91346 8.20886 8.36020 8.56850 8.77846 8.87198 9.12330 9.21000 10.46406 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.003357 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.763021 B = 8339.386138 C = 8739.674878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.092 4.092 6 H 0.081 0.919 7 C -0.149 4.149 8 C -0.119 4.119 9 C 0.156 3.844 10 H 0.075 0.925 11 C -0.168 4.168 12 N -0.753 5.753 13 C 0.104 3.896 14 C -0.169 4.169 15 C -0.117 4.117 16 C 0.070 3.930 17 C -0.467 4.467 18 H 0.070 0.930 19 C 0.072 3.928 20 N -0.816 5.816 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.266 1.266 25 C -0.182 4.182 26 C -0.166 4.166 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.381 0.619 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.274 0.726 48 H 0.090 0.910 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 14.459 -3.797 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.110 4.110 6 H 0.099 0.901 7 C -0.206 4.206 8 C -0.157 4.157 9 C 0.050 3.950 10 H 0.093 0.907 11 C -0.227 4.227 12 N -0.387 5.387 13 C 0.007 3.993 14 C -0.190 4.190 15 C -0.137 4.137 16 C 0.067 3.933 17 C -0.498 4.498 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.445 5.445 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.190 1.190 25 C -0.202 4.202 26 C -0.188 4.188 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.214 0.786 45 H 0.106 0.894 46 H 0.138 0.862 47 H 0.085 0.915 48 H 0.108 0.892 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.123 14.305 -3.566 16.832 hybrid contribution -0.483 -0.479 0.178 0.703 sum 7.640 13.826 -3.387 16.155 Atomic orbital electron populations 1.21897 0.95251 1.02331 1.01223 1.21177 0.96021 0.95673 0.98968 1.21844 1.00639 0.96433 1.01465 1.21693 1.00363 0.95182 0.97323 1.21171 1.01477 0.93532 0.94840 0.90106 1.21913 0.99530 1.01315 0.97863 1.21907 1.00710 0.95694 0.97363 1.20659 0.82428 0.94457 0.97492 0.90701 1.22318 0.99774 1.01823 0.98756 1.43966 1.03184 1.19960 1.71586 1.17363 0.90632 0.89254 1.02087 1.20131 0.97079 0.95410 1.06423 1.21010 0.94850 0.97707 1.00176 1.17490 0.91860 0.91928 0.92014 1.19356 1.02004 1.09634 1.18838 0.91166 1.25762 0.94593 0.98702 0.95148 1.69823 1.17693 1.36177 1.20768 0.86378 0.80277 0.82465 0.77849 1.19684 1.20620 1.18979 1.20572 0.97507 0.94573 1.07569 1.19797 0.91829 0.99282 1.07872 0.92996 0.91918 0.93135 0.90959 0.92951 0.92963 0.93003 0.92358 0.92399 0.93310 0.92849 0.91971 0.92185 0.91553 0.92047 0.93216 0.93144 0.78621 0.89363 0.86209 0.91518 0.89221 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.97 37.16 0.33 -1.19 16 2 C -0.10 -0.96 2.80 -90.62 -0.25 -1.22 16 3 C -0.15 -1.22 9.19 37.15 0.34 -0.88 16 4 C -0.11 -1.06 4.13 -26.73 -0.11 -1.17 16 5 C -0.09 -1.06 2.21 -90.61 -0.20 -1.26 16 6 H 0.08 1.08 5.81 -51.93 -0.30 0.77 16 7 C -0.15 -1.82 8.72 37.16 0.32 -1.50 16 8 C -0.12 -1.36 4.22 -26.73 -0.11 -1.47 16 9 C 0.16 2.25 2.12 -67.93 -0.14 2.11 16 10 H 0.08 1.21 4.75 -51.93 -0.25 0.96 16 11 C -0.17 -2.32 9.40 37.16 0.35 -1.97 16 12 N -0.75 -12.60 4.59 -52.03 -0.24 -12.83 16 13 C 0.10 2.22 6.65 -83.69 -0.56 1.66 16 14 C -0.17 -3.91 8.73 -39.77 -0.35 -4.26 16 15 C -0.12 -3.09 8.61 -39.26 -0.34 -3.43 16 16 C 0.07 1.90 5.56 -106.79 -0.59 1.31 16 17 C -0.47 -12.84 9.05 -37.88 -0.34 -13.18 16 18 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 19 C 0.07 1.88 5.23 -17.34 -0.09 1.79 16 20 N -0.82 -21.95 10.81 55.54 0.60 -21.35 16 21 Si 0.90 19.62 29.58 -169.99 -5.03 14.59 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.18 -4.54 9.74 -39.27 -0.38 -4.92 16 26 C -0.17 -3.71 9.82 -39.77 -0.39 -4.10 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.72 6.47 -51.93 -0.34 0.39 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.74 6.28 -51.93 -0.33 0.41 16 31 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.63 6.31 -51.93 -0.33 0.30 16 38 H 0.06 0.90 6.66 -51.93 -0.35 0.56 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.99 7.63 -51.93 -0.40 0.59 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.38 5.83 8.60 -40.82 -0.35 5.47 16 45 H 0.09 1.89 6.02 -52.49 -0.32 1.57 16 46 H 0.12 3.29 6.15 -52.49 -0.32 2.97 16 47 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 48 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 49 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -27.39 376.13 -10.25 -37.64 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -8.74 Total: 9.96 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -2.52 Total: -33.67 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.36 Total: -34.19 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.39 -10.25 -37.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560742376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.924 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds