Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47301 * 2 1 4 4 C 1.52998 * 109.47075 * 239.99064 * 2 1 3 5 5 C 1.52998 * 109.47585 * 294.39591 * 4 2 1 6 6 H 1.08990 * 109.47411 * 54.10852 * 5 4 2 7 7 C 1.53010 * 109.46679 * 294.11010 * 5 4 2 8 8 C 1.53002 * 109.47229 * 174.11720 * 5 4 2 9 9 C 1.53004 * 109.46879 * 184.99793 * 8 5 4 10 10 H 1.09001 * 109.47016 * 304.99250 * 9 8 5 11 11 C 1.53004 * 109.46803 * 184.99426 * 9 8 5 12 12 N 1.46500 * 109.47380 * 64.99511 * 9 8 5 13 13 C 1.38849 * 119.99920 * 204.99799 * 12 9 8 14 14 C 1.39567 * 119.84517 * 359.72837 * 13 12 9 15 15 C 1.36336 * 120.16048 * 179.71741 * 14 13 12 16 16 C 1.40890 * 119.83778 * 0.55379 * 15 14 13 17 17 C 1.41132 * 120.15459 * 179.70007 * 16 15 14 18 18 H 1.08002 * 119.99923 * 207.54122 * 17 16 15 19 19 C 1.39861 * 120.00204 * 27.53607 * 17 16 15 20 20 N 1.30903 * 120.00026 * 11.97051 * 19 17 16 21 21 Si 1.86803 * 120.00231 * 191.96349 * 19 17 16 22 22 H 1.48502 * 109.47047 * 89.99872 * 21 19 17 23 23 H 1.48492 * 109.47359 * 210.00221 * 21 19 17 24 24 H 1.48501 * 109.47133 * 330.00434 * 21 19 17 25 25 C 1.40888 * 119.68721 * 359.71692 * 16 15 14 26 26 C 1.36335 * 119.83613 * 0.02562 * 25 16 15 27 27 H 1.09006 * 109.46554 * 60.00247 * 1 2 3 28 28 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47032 * 300.00416 * 1 2 3 30 30 H 1.09006 * 109.46554 * 119.99753 * 2 1 3 31 31 H 1.09007 * 109.46887 * 295.20374 * 3 2 1 32 32 H 1.08996 * 109.47992 * 55.20475 * 3 2 1 33 33 H 1.09003 * 109.47369 * 175.21288 * 3 2 1 34 34 H 1.09001 * 109.46751 * 54.39423 * 4 2 1 35 35 H 1.09002 * 109.47084 * 174.38814 * 4 2 1 36 36 H 1.08997 * 109.46983 * 295.78719 * 7 5 4 37 37 H 1.09000 * 109.46718 * 55.79070 * 7 5 4 38 38 H 1.08997 * 109.46748 * 175.79258 * 7 5 4 39 39 H 1.09004 * 109.46609 * 304.99015 * 8 5 4 40 40 H 1.08994 * 109.47478 * 64.99303 * 8 5 4 41 41 H 1.09000 * 109.46862 * 179.97438 * 11 9 8 42 42 H 1.09000 * 109.47375 * 300.00239 * 11 9 8 43 43 H 1.09002 * 109.46758 * 59.99711 * 11 9 8 44 44 H 0.97011 * 119.99806 * 25.00102 * 12 9 8 45 45 H 1.07996 * 119.91333 * 359.97438 * 14 13 12 46 46 H 1.07996 * 120.07888 * 180.27580 * 15 14 13 47 47 H 0.97003 * 120.00016 * 180.02562 * 20 19 17 48 48 H 1.07997 * 120.07956 * 179.97438 * 25 16 15 49 49 H 1.07998 * 119.91979 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6484 -2.1988 -1.1805 6 1 0.5731 -2.2828 -1.0238 7 6 2.3868 -2.8688 -0.0199 8 6 2.0281 -2.8886 -2.4924 9 6 1.5253 -4.3335 -2.4730 10 1 1.9104 -4.8404 -1.5882 11 6 2.0115 -5.0596 -3.7289 12 7 0.0606 -4.3406 -2.4411 13 6 -0.6170 -5.4307 -1.9117 14 6 0.1004 -6.5205 -1.4160 15 6 -0.5583 -7.5918 -0.8895 16 6 -1.9668 -7.6021 -0.8572 17 6 -2.6555 -8.7104 -0.3194 18 1 -3.6504 -8.9480 -0.6661 19 6 -2.0497 -9.5011 0.6624 20 7 -0.9551 -9.0897 1.2507 21 14 -2.8027 -11.1442 1.1344 22 1 -2.2350 -12.2140 0.2750 23 1 -2.4974 -11.4381 2.5575 24 1 -4.2746 -11.0866 0.9456 25 6 -2.6844 -6.5009 -1.3645 26 6 -2.0124 -5.4342 -1.8833 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7486 1.9308 -0.9299 32 1 1.6084 1.9806 0.8438 33 1 3.1267 1.4436 0.0858 34 1 1.5970 -0.2689 -2.1363 35 1 3.1254 -0.6352 -1.3008 36 1 3.4593 -2.8510 -0.2130 37 1 2.1749 -2.3310 0.9042 38 1 2.0519 -3.9016 0.0758 39 1 1.5725 -2.3566 -3.3276 40 1 3.1121 -2.8826 -2.6056 41 1 1.6537 -6.0891 -3.7149 42 1 1.6264 -4.5527 -4.6138 43 1 3.1013 -5.0543 -3.7527 44 1 -0.4358 -3.5836 -2.7899 45 1 1.1799 -6.5133 -1.4459 46 1 -0.0018 -8.4325 -0.5022 47 1 -0.5347 -9.6382 1.9313 48 1 -3.7642 -6.5023 -1.3433 49 1 -2.5612 -4.5895 -2.2729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560742376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -29.083336 kcal Electronic energy + Delta-G solvation = -23290.113424 eV Core-core repulsion = 20214.673982 eV Total energy + Delta-G solvation = -3075.439441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14649 -38.94930 -37.19266 -35.36285 -33.88538 -31.95800 -31.30103 -29.68784 -28.00696 -27.74728 -27.27601 -26.06419 -23.44656 -22.64460 -21.90509 -20.62144 -20.19423 -19.12410 -17.97516 -16.86589 -16.59168 -16.27348 -15.83775 -15.65821 -14.97334 -14.80296 -14.72647 -14.49866 -14.12541 -13.99511 -13.74643 -13.52783 -13.42016 -13.28166 -13.15976 -12.97193 -12.76795 -12.70915 -12.50371 -12.40473 -12.33476 -12.25604 -12.11517 -11.91000 -11.64634 -11.52629 -11.23837 -11.14393 -11.07665 -11.01011 -10.89304 -10.23386 -9.36527 -8.46828 -8.07443 -6.00012 1.13595 1.22278 1.39653 1.52111 1.60159 2.28690 2.89478 2.97885 3.70521 3.87398 3.95806 4.01719 4.15596 4.29501 4.30772 4.41549 4.53023 4.55674 4.57428 4.63377 4.79308 4.79781 4.82328 4.86036 4.92853 4.98794 5.01891 5.06060 5.06860 5.11392 5.18089 5.20212 5.22461 5.23093 5.31778 5.37911 5.39635 5.46035 5.49820 5.52372 5.64660 5.67669 5.75658 5.85783 6.01717 6.22221 6.43747 6.72488 6.93515 7.12031 7.20762 7.39044 8.53992 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.003357 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.763021 B = 8339.386138 C = 8739.674878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.088 4.088 6 H 0.061 0.939 7 C -0.147 4.147 8 C -0.109 4.109 9 C 0.152 3.848 10 H 0.056 0.944 11 C -0.163 4.163 12 N -0.740 5.740 13 C 0.129 3.871 14 C -0.177 4.177 15 C -0.136 4.136 16 C 0.029 3.971 17 C -0.505 4.505 18 H 0.065 0.935 19 C 0.027 3.973 20 N -0.850 5.850 21 Si 0.978 3.022 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.262 1.262 25 C -0.190 4.190 26 C -0.173 4.173 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.032 0.968 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.032 0.968 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.394 0.606 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.279 0.721 48 H 0.094 0.906 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 16.459 -4.906 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.138 4.138 5 C -0.107 4.107 6 H 0.079 0.921 7 C -0.204 4.204 8 C -0.147 4.147 9 C 0.046 3.954 10 H 0.074 0.926 11 C -0.222 4.222 12 N -0.373 5.373 13 C 0.029 3.971 14 C -0.199 4.199 15 C -0.156 4.156 16 C 0.026 3.974 17 C -0.537 4.537 18 H 0.083 0.917 19 C -0.183 4.183 20 N -0.479 5.479 21 Si 0.800 3.200 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.186 1.186 25 C -0.210 4.210 26 C -0.196 4.196 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.228 0.772 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.139 16.352 -4.701 19.314 hybrid contribution -0.711 -0.912 0.450 1.241 sum 8.428 15.441 -4.252 18.098 Atomic orbital electron populations 1.21884 0.95857 1.01187 1.01687 1.21175 0.95493 0.96614 0.98639 1.21809 1.01037 0.95328 1.01887 1.21624 1.01043 0.93532 0.97607 1.21114 1.00135 0.94923 0.94514 0.92071 1.21890 1.00520 0.99515 0.98510 1.21846 1.01884 0.93217 0.97716 1.20841 0.80631 0.96779 0.97149 0.92575 1.22253 1.01356 0.99975 0.98593 1.44020 1.04467 1.18712 1.70133 1.17429 0.90615 0.89521 0.99534 1.20238 0.97872 0.95333 1.06480 1.20921 0.94800 0.98323 1.01593 1.17796 0.92548 0.93156 0.93891 1.19576 1.02356 1.11328 1.20404 0.91707 1.26585 0.95031 1.02073 0.94612 1.69905 1.19003 1.37589 1.21402 0.85271 0.79352 0.77567 0.77828 1.19008 1.19612 1.18597 1.20771 0.97947 0.94849 1.07457 1.20085 0.92451 0.99497 1.07536 0.92316 0.93794 0.92940 0.91857 0.92369 0.92784 0.92333 0.91529 0.91321 0.91805 0.92846 0.94919 0.90683 0.89586 0.94848 0.92065 0.90774 0.77186 0.88000 0.88344 0.91051 0.88790 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.97 71.98 0.65 -2.17 16 2 C -0.10 -1.73 2.80 -10.80 -0.03 -1.76 16 3 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 4 C -0.10 -1.66 4.13 30.59 0.13 -1.53 16 5 C -0.09 -1.84 2.21 -10.79 -0.02 -1.86 16 6 H 0.06 1.53 5.81 -2.39 -0.01 1.52 16 7 C -0.15 -3.43 8.72 71.99 0.63 -2.80 16 8 C -0.11 -2.13 4.22 30.60 0.13 -2.00 16 9 C 0.15 4.06 2.12 44.99 0.10 4.16 16 10 H 0.06 1.76 4.75 -2.39 -0.01 1.75 16 11 C -0.16 -4.13 9.40 71.98 0.68 -3.45 16 12 N -0.74 -23.40 4.59 -318.53 -1.46 -24.86 16 13 C 0.13 5.44 6.65 38.67 0.26 5.69 16 14 C -0.18 -8.38 8.73 22.15 0.19 -8.19 16 15 C -0.14 -7.50 8.61 22.48 0.19 -7.31 16 16 C 0.03 1.64 5.56 -21.27 -0.12 1.52 16 17 C -0.50 -29.05 9.05 23.37 0.21 -28.84 16 18 H 0.06 3.63 7.87 -2.91 -0.02 3.60 16 19 C 0.03 1.47 5.23 85.22 0.45 1.92 16 20 N -0.85 -47.58 10.81 21.81 0.24 -47.35 16 21 Si 0.98 41.32 29.58 68.60 2.03 43.35 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 25 C -0.19 -9.69 9.74 22.47 0.22 -9.47 16 26 C -0.17 -7.65 9.82 22.15 0.22 -7.43 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.04 0.98 6.47 -2.39 -0.02 0.97 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.20 6.28 -2.38 -0.01 1.19 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.22 6.31 -2.39 -0.02 1.20 16 38 H 0.03 0.94 6.66 -2.39 -0.02 0.92 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.03 1.03 7.63 -2.39 -0.02 1.01 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 44 H 0.39 10.90 8.60 -92.70 -0.80 10.11 16 45 H 0.10 4.44 6.02 -2.91 -0.02 4.43 16 46 H 0.10 5.75 6.15 -2.91 -0.02 5.73 16 47 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 48 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 49 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -61.83 376.13 5.44 -56.39 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.11 Total: 37.34 kcal Atomic # 6 Polarization: -69.40 SS G_CDS: 4.53 Total: -64.87 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.23 Total: -72.20 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -61.83 5.44 -56.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560742376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.304 kcal (2) G-P(sol) polarization free energy of solvation -61.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds