Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47181 * 2 1 4 4 C 1.52994 * 109.46979 * 119.99787 * 2 1 3 5 5 C 1.53004 * 109.47351 * 65.00293 * 4 2 1 6 6 H 1.09001 * 109.46763 * 304.99912 * 5 4 2 7 7 C 1.52996 * 109.47240 * 64.99676 * 5 4 2 8 8 C 1.53000 * 109.47210 * 184.99800 * 5 4 2 9 9 C 1.53001 * 109.46801 * 174.99755 * 8 5 4 10 10 H 1.08994 * 109.47196 * 55.00039 * 9 8 5 11 11 C 1.53004 * 109.47001 * 175.00153 * 9 8 5 12 12 N 1.46504 * 109.47160 * 294.99824 * 9 8 5 13 13 C 1.38866 * 119.99739 * 154.99803 * 12 9 8 14 14 C 1.39566 * 119.84047 * 0.25540 * 13 12 9 15 15 C 1.36341 * 120.15728 * 180.25595 * 14 13 12 16 16 C 1.40890 * 119.83675 * 359.49286 * 15 14 13 17 17 C 1.41130 * 120.15869 * 180.27698 * 16 15 14 18 18 H 1.08001 * 120.00266 * 154.52104 * 17 16 15 19 19 C 1.39872 * 119.99649 * 334.53027 * 17 16 15 20 20 N 1.30895 * 119.99806 * 343.06174 * 19 17 16 21 21 Si 1.86802 * 119.99630 * 163.06055 * 19 17 16 22 22 H 1.48503 * 109.47104 * 60.00260 * 21 19 17 23 23 H 1.48504 * 109.46748 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47517 * 299.99898 * 21 19 17 25 25 C 1.40892 * 119.68821 * 0.25538 * 16 15 14 26 26 C 1.36340 * 119.83544 * 359.97438 * 25 16 15 27 27 H 1.09000 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47469 * 300.00590 * 1 2 3 29 29 H 1.09003 * 109.47146 * 60.00246 * 1 2 3 30 30 H 1.09000 * 109.47045 * 240.00056 * 2 1 3 31 31 H 1.08997 * 109.47004 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46879 * 299.99918 * 3 2 1 33 33 H 1.09000 * 109.47085 * 60.00080 * 3 2 1 34 34 H 1.09001 * 109.47434 * 304.99764 * 4 2 1 35 35 H 1.09008 * 109.47454 * 185.00053 * 4 2 1 36 36 H 1.09001 * 109.47050 * 60.00412 * 7 5 4 37 37 H 1.08999 * 109.47308 * 180.02562 * 7 5 4 38 38 H 1.09006 * 109.47125 * 300.00405 * 7 5 4 39 39 H 1.08999 * 109.46734 * 54.99927 * 8 5 4 40 40 H 1.08994 * 109.47499 * 294.99829 * 8 5 4 41 41 H 1.08996 * 109.47221 * 299.99896 * 11 9 8 42 42 H 1.09002 * 109.46898 * 59.99981 * 11 9 8 43 43 H 1.09004 * 109.47033 * 179.97438 * 11 9 8 44 44 H 0.96998 * 120.00104 * 335.00319 * 12 9 8 45 45 H 1.07995 * 119.92348 * 0.02562 * 14 13 12 46 46 H 1.07993 * 120.08407 * 179.77024 * 15 14 13 47 47 H 0.97009 * 119.99636 * 180.02562 * 20 19 17 48 48 H 1.07993 * 120.08152 * 180.02562 * 25 16 15 49 49 H 1.07996 * 119.91824 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0527 7 6 2.3448 -2.8708 0.0128 8 6 2.0353 -2.8887 2.4919 9 6 1.5207 -4.3296 2.4821 10 1 1.8840 -4.8391 1.5897 11 6 2.0260 -5.0601 3.7279 12 7 0.0557 -4.3248 2.4794 13 6 -0.6412 -5.4094 1.9632 14 6 0.0574 -6.5044 1.4526 15 6 -0.6202 -7.5704 0.9394 16 6 -2.0290 -7.5693 0.9351 17 6 -2.7373 -8.6717 0.4109 18 1 -3.7399 -8.8818 0.7532 19 6 -2.1407 -9.4925 -0.5519 20 7 -1.0881 -9.0735 -1.2075 21 14 -2.8463 -11.1863 -0.9019 22 1 -4.2505 -11.0515 -1.3658 23 1 -2.0387 -11.8506 -1.9565 24 1 -2.8107 -12.0033 0.3376 25 6 -2.7276 -6.4627 1.4570 26 6 -2.0368 -5.4016 1.9627 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 3.4238 -2.7955 0.1480 37 1 2.0562 -3.9209 -0.0311 38 1 2.0598 -2.3768 -0.9162 39 1 1.6008 -2.3534 3.3361 40 1 3.1214 -2.8915 2.5835 41 1 3.1160 -5.0636 3.7299 42 1 1.6626 -4.5505 4.6203 43 1 1.6590 -6.0865 3.7211 44 1 -0.4275 -3.5641 2.8382 45 1 1.1374 -6.5058 1.4606 46 1 -0.0783 -8.4155 0.5412 47 1 -0.6746 -9.6426 -1.8755 48 1 -3.8075 -6.4553 1.4573 49 1 -2.5709 -4.5524 2.3627 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560742377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = -17.776780 kcal Electronic energy + Delta-G solvation = -23288.806688 eV Core-core repulsion = 20213.857536 eV Total energy + Delta-G solvation = -3074.949152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.76824 -37.60378 -35.88760 -33.72976 -32.55299 -30.51116 -29.40509 -27.95091 -27.26785 -26.79846 -26.32253 -24.24050 -21.96761 -21.12686 -20.43989 -19.46723 -19.13474 -17.16230 -16.38981 -15.56028 -15.23897 -14.87130 -14.76626 -14.04198 -14.00971 -13.73945 -13.36445 -12.97463 -12.75857 -12.53251 -12.45207 -12.38469 -12.17247 -11.89654 -11.88858 -11.60037 -11.57611 -11.42901 -11.25493 -11.18932 -11.07037 -10.98036 -10.73468 -10.67246 -10.43318 -10.32542 -10.19385 -9.93648 -9.65671 -9.21863 -9.15091 -8.48271 -7.43861 -6.58366 -6.31031 -3.98630 2.97103 3.14694 3.16648 3.19962 3.40615 4.08845 4.38899 4.58977 4.77543 4.81654 4.84589 5.05533 5.18691 5.21827 5.48784 5.52226 5.55263 5.57809 5.64499 5.70445 5.75400 5.80289 5.85460 5.88567 5.90365 5.99590 6.02993 6.04661 6.07463 6.19046 6.23510 6.28609 6.31298 6.32634 6.41869 6.54942 6.59990 6.63502 6.98751 7.02583 7.25265 7.40887 7.62632 7.74429 7.90247 8.19989 8.35648 8.56922 8.77474 8.87134 9.10980 9.20870 10.42704 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.003349 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.487612 B = 8358.776598 C = 8744.387209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.092 4.092 6 H 0.081 0.919 7 C -0.149 4.149 8 C -0.119 4.119 9 C 0.156 3.844 10 H 0.075 0.925 11 C -0.168 4.168 12 N -0.753 5.753 13 C 0.100 3.900 14 C -0.166 4.166 15 C -0.122 4.122 16 C 0.073 3.927 17 C -0.469 4.469 18 H 0.071 0.929 19 C 0.075 3.925 20 N -0.810 5.810 21 Si 0.902 3.098 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.267 1.267 25 C -0.185 4.185 26 C -0.163 4.163 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.381 0.619 45 H 0.088 0.912 46 H 0.117 0.883 47 H 0.275 0.725 48 H 0.089 0.911 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 14.280 3.629 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.110 4.110 6 H 0.099 0.901 7 C -0.206 4.206 8 C -0.157 4.157 9 C 0.050 3.950 10 H 0.093 0.907 11 C -0.227 4.227 12 N -0.387 5.387 13 C 0.003 3.997 14 C -0.188 4.188 15 C -0.142 4.142 16 C 0.070 3.930 17 C -0.500 4.500 18 H 0.089 0.911 19 C -0.140 4.140 20 N -0.438 5.438 21 Si 0.727 3.273 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.192 1.192 25 C -0.206 4.206 26 C -0.185 4.185 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.214 0.786 45 H 0.106 0.894 46 H 0.135 0.865 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.371 14.124 3.388 16.764 hybrid contribution -0.468 -0.508 -0.121 0.701 sum 7.903 13.615 3.268 16.078 Atomic orbital electron populations 1.21894 0.95243 1.02343 1.01226 1.21170 0.96026 0.95666 0.98955 1.21846 1.00651 0.96443 1.01440 1.21697 1.00315 0.95198 0.97346 1.21169 1.01507 0.93527 0.94811 0.90101 1.21908 0.99558 1.01341 0.97789 1.21899 1.00637 0.95724 0.97424 1.20662 0.82347 0.94472 0.97558 0.90703 1.22319 0.99725 1.01804 0.98822 1.43955 1.03062 1.20013 1.71694 1.17339 0.90453 0.89393 1.02498 1.20109 0.97098 0.95338 1.06217 1.20932 0.94599 0.97776 1.00913 1.17471 0.91866 0.91780 0.91884 1.19320 1.01368 1.09347 1.19958 0.91125 1.25769 0.94490 0.99146 0.94605 1.69843 1.19270 1.36057 1.18597 0.86481 0.79667 0.82597 0.78518 1.19331 1.20628 1.19153 1.20541 0.97412 0.94663 1.07952 1.19794 0.91786 0.99234 1.07675 0.91904 0.92991 0.93143 0.90972 0.92989 0.92989 0.92950 0.92368 0.92409 0.93335 0.91959 0.92865 0.92182 0.91566 0.93152 0.93223 0.92058 0.78637 0.89387 0.86533 0.91378 0.89243 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.95 37.16 0.33 -1.19 16 2 C -0.10 -0.96 2.78 -90.62 -0.25 -1.21 16 3 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.11 -1.06 4.15 -26.73 -0.11 -1.17 16 5 C -0.09 -1.06 2.20 -90.62 -0.20 -1.26 16 6 H 0.08 1.08 5.82 -51.93 -0.30 0.78 16 7 C -0.15 -1.82 8.71 37.16 0.32 -1.50 16 8 C -0.12 -1.36 4.22 -26.73 -0.11 -1.48 16 9 C 0.16 2.25 2.12 -67.93 -0.14 2.11 16 10 H 0.08 1.21 4.66 -51.93 -0.24 0.97 16 11 C -0.17 -2.33 9.40 37.16 0.35 -1.98 16 12 N -0.75 -12.63 4.59 -52.03 -0.24 -12.87 16 13 C 0.10 2.15 6.65 -83.68 -0.56 1.59 16 14 C -0.17 -3.85 8.73 -39.77 -0.35 -4.20 16 15 C -0.12 -3.22 8.63 -39.26 -0.34 -3.55 16 16 C 0.07 1.99 5.57 -106.79 -0.59 1.39 16 17 C -0.47 -12.88 9.03 -37.87 -0.34 -13.23 16 18 H 0.07 1.88 7.90 -52.49 -0.41 1.46 16 19 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 20 N -0.81 -21.72 10.96 55.54 0.61 -21.12 16 21 Si 0.90 19.50 29.59 -169.99 -5.03 14.47 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C -0.19 -4.63 9.74 -39.26 -0.38 -5.02 16 26 C -0.16 -3.65 9.82 -39.77 -0.39 -4.04 16 27 H 0.06 0.73 6.46 -51.93 -0.34 0.39 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.74 6.34 -51.93 -0.33 0.41 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16 38 H 0.05 0.63 6.46 -51.93 -0.34 0.30 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.99 7.63 -51.93 -0.40 0.59 16 44 H 0.38 5.84 8.60 -40.82 -0.35 5.49 16 45 H 0.09 1.88 6.03 -52.49 -0.32 1.57 16 46 H 0.12 3.19 6.19 -52.49 -0.32 2.87 16 47 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 48 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 49 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -27.34 376.19 -10.24 -37.58 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.74 Total: 10.01 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: -2.51 Total: -33.74 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.37 Total: -33.98 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.34 -10.24 -37.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560742377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.803 kcal (2) G-P(sol) polarization free energy of solvation -27.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds