Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47181 * 2 1 4 4 C 1.52994 * 109.46979 * 119.99787 * 2 1 3 5 5 C 1.53004 * 109.47351 * 65.00293 * 4 2 1 6 6 H 1.09001 * 109.46763 * 304.99912 * 5 4 2 7 7 C 1.52996 * 109.47240 * 64.99676 * 5 4 2 8 8 C 1.53000 * 109.47210 * 184.99800 * 5 4 2 9 9 C 1.53001 * 109.46801 * 174.99755 * 8 5 4 10 10 H 1.08994 * 109.47196 * 55.00039 * 9 8 5 11 11 C 1.53004 * 109.47001 * 175.00153 * 9 8 5 12 12 N 1.46504 * 109.47160 * 294.99824 * 9 8 5 13 13 C 1.38866 * 119.99739 * 154.99803 * 12 9 8 14 14 C 1.39566 * 119.84047 * 0.25540 * 13 12 9 15 15 C 1.36341 * 120.15728 * 180.25595 * 14 13 12 16 16 C 1.40890 * 119.83675 * 359.49286 * 15 14 13 17 17 C 1.41130 * 120.15869 * 180.27698 * 16 15 14 18 18 H 1.08001 * 120.00266 * 154.52104 * 17 16 15 19 19 C 1.39872 * 119.99649 * 334.53027 * 17 16 15 20 20 N 1.30895 * 119.99806 * 343.06174 * 19 17 16 21 21 Si 1.86802 * 119.99630 * 163.06055 * 19 17 16 22 22 H 1.48503 * 109.47104 * 60.00260 * 21 19 17 23 23 H 1.48504 * 109.46748 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47517 * 299.99898 * 21 19 17 25 25 C 1.40892 * 119.68821 * 0.25538 * 16 15 14 26 26 C 1.36340 * 119.83544 * 359.97438 * 25 16 15 27 27 H 1.09000 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47469 * 300.00590 * 1 2 3 29 29 H 1.09003 * 109.47146 * 60.00246 * 1 2 3 30 30 H 1.09000 * 109.47045 * 240.00056 * 2 1 3 31 31 H 1.08997 * 109.47004 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46879 * 299.99918 * 3 2 1 33 33 H 1.09000 * 109.47085 * 60.00080 * 3 2 1 34 34 H 1.09001 * 109.47434 * 304.99764 * 4 2 1 35 35 H 1.09008 * 109.47454 * 185.00053 * 4 2 1 36 36 H 1.09001 * 109.47050 * 60.00412 * 7 5 4 37 37 H 1.08999 * 109.47308 * 180.02562 * 7 5 4 38 38 H 1.09006 * 109.47125 * 300.00405 * 7 5 4 39 39 H 1.08999 * 109.46734 * 54.99927 * 8 5 4 40 40 H 1.08994 * 109.47499 * 294.99829 * 8 5 4 41 41 H 1.08996 * 109.47221 * 299.99896 * 11 9 8 42 42 H 1.09002 * 109.46898 * 59.99981 * 11 9 8 43 43 H 1.09004 * 109.47033 * 179.97438 * 11 9 8 44 44 H 0.96998 * 120.00104 * 335.00319 * 12 9 8 45 45 H 1.07995 * 119.92348 * 0.02562 * 14 13 12 46 46 H 1.07993 * 120.08407 * 179.77024 * 15 14 13 47 47 H 0.97009 * 119.99636 * 180.02562 * 20 19 17 48 48 H 1.07993 * 120.08152 * 180.02562 * 25 16 15 49 49 H 1.07996 * 119.91824 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0527 7 6 2.3448 -2.8708 0.0128 8 6 2.0353 -2.8887 2.4919 9 6 1.5207 -4.3296 2.4821 10 1 1.8840 -4.8391 1.5897 11 6 2.0260 -5.0601 3.7279 12 7 0.0557 -4.3248 2.4794 13 6 -0.6412 -5.4094 1.9632 14 6 0.0574 -6.5044 1.4526 15 6 -0.6202 -7.5704 0.9394 16 6 -2.0290 -7.5693 0.9351 17 6 -2.7373 -8.6717 0.4109 18 1 -3.7399 -8.8818 0.7532 19 6 -2.1407 -9.4925 -0.5519 20 7 -1.0881 -9.0735 -1.2075 21 14 -2.8463 -11.1863 -0.9019 22 1 -4.2505 -11.0515 -1.3658 23 1 -2.0387 -11.8506 -1.9565 24 1 -2.8107 -12.0033 0.3376 25 6 -2.7276 -6.4627 1.4570 26 6 -2.0368 -5.4016 1.9627 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 3.4238 -2.7955 0.1480 37 1 2.0562 -3.9209 -0.0311 38 1 2.0598 -2.3768 -0.9162 39 1 1.6008 -2.3534 3.3361 40 1 3.1214 -2.8915 2.5835 41 1 3.1160 -5.0636 3.7299 42 1 1.6626 -4.5505 4.6203 43 1 1.6590 -6.0865 3.7211 44 1 -0.4275 -3.5641 2.8382 45 1 1.1374 -6.5058 1.4606 46 1 -0.0783 -8.4155 0.5412 47 1 -0.6746 -9.6426 -1.8755 48 1 -3.8075 -6.4553 1.4573 49 1 -2.5709 -4.5524 2.3627 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560742377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -29.102145 kcal Electronic energy + Delta-G solvation = -23289.297793 eV Core-core repulsion = 20213.857536 eV Total energy + Delta-G solvation = -3075.440257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.14315 -38.95031 -37.19208 -35.37538 -33.88602 -31.96048 -31.29939 -29.69668 -28.01350 -27.74381 -27.27488 -26.05900 -23.44690 -22.65379 -21.90712 -20.62080 -20.17990 -19.12812 -17.97501 -16.86781 -16.59552 -16.26958 -15.83992 -15.66220 -14.98171 -14.80815 -14.73416 -14.49698 -14.11667 -14.00166 -13.73311 -13.55433 -13.43743 -13.26555 -13.14586 -12.97357 -12.75203 -12.71934 -12.49507 -12.40436 -12.34631 -12.26027 -12.11716 -11.90847 -11.64212 -11.55438 -11.24199 -11.14051 -11.08833 -10.97444 -10.88733 -10.23961 -9.36660 -8.51719 -8.08904 -5.97934 1.14366 1.21948 1.39463 1.50390 1.61341 2.28001 2.87409 2.98555 3.70686 3.87814 3.96233 4.01571 4.15546 4.29638 4.30855 4.41373 4.53020 4.55745 4.57323 4.63486 4.79049 4.80339 4.82669 4.86190 4.92863 4.99053 5.02101 5.05827 5.06882 5.11557 5.17752 5.19924 5.22191 5.22780 5.31492 5.37953 5.39737 5.46204 5.49453 5.52410 5.64575 5.67511 5.75080 5.85714 6.00690 6.21531 6.43377 6.71832 6.93418 7.11077 7.20850 7.39715 8.50892 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.003349 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.487612 B = 8358.776598 C = 8744.387209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.088 4.088 6 H 0.061 0.939 7 C -0.147 4.147 8 C -0.109 4.109 9 C 0.152 3.848 10 H 0.056 0.944 11 C -0.163 4.163 12 N -0.740 5.740 13 C 0.125 3.875 14 C -0.174 4.174 15 C -0.141 4.141 16 C 0.032 3.968 17 C -0.508 4.508 18 H 0.066 0.934 19 C 0.031 3.969 20 N -0.844 5.844 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.264 1.264 25 C -0.194 4.194 26 C -0.171 4.171 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.393 0.607 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.281 0.719 48 H 0.093 0.907 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.120 16.213 4.745 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.138 4.138 5 C -0.107 4.107 6 H 0.079 0.921 7 C -0.204 4.204 8 C -0.147 4.147 9 C 0.046 3.954 10 H 0.074 0.926 11 C -0.222 4.222 12 N -0.374 5.374 13 C 0.025 3.975 14 C -0.196 4.196 15 C -0.161 4.161 16 C 0.030 3.970 17 C -0.539 4.539 18 H 0.084 0.916 19 C -0.180 4.180 20 N -0.472 5.472 21 Si 0.797 3.203 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.188 1.188 25 C -0.214 4.214 26 C -0.193 4.193 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.228 0.772 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.470 16.104 4.529 19.223 hybrid contribution -0.723 -0.917 -0.400 1.234 sum 8.747 15.187 4.129 18.006 Atomic orbital electron populations 1.21881 0.95873 1.01183 1.01680 1.21167 0.95475 0.96613 0.98637 1.21811 1.01082 0.95335 1.01831 1.21629 1.00995 0.93560 0.97623 1.21112 1.00174 0.94910 0.94481 0.92078 1.21886 1.00653 0.99538 0.98342 1.21836 1.01776 0.93270 0.97785 1.20845 0.80572 0.96783 0.97208 0.92553 1.22254 1.01276 0.99966 0.98677 1.44010 1.04308 1.18786 1.70278 1.17408 0.90482 0.89646 0.99916 1.20222 0.97870 0.95270 1.06279 1.20853 0.94578 0.98381 1.02313 1.17781 0.92547 0.92996 0.93717 1.19549 1.01744 1.11107 1.21549 0.91624 1.26585 0.94831 1.02734 0.93884 1.69917 1.20596 1.37491 1.19231 0.85369 0.79065 0.77372 0.78510 1.18695 1.19473 1.18821 1.20742 0.97882 0.94937 1.07868 1.20082 0.92375 0.99468 1.07374 0.93800 0.92332 0.92945 0.91846 0.92279 0.92806 0.92409 0.91560 0.91308 0.91762 0.94778 0.93031 0.90694 0.89599 0.90776 0.92087 0.94855 0.77215 0.88003 0.88610 0.90904 0.88835 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.95 71.98 0.64 -2.18 16 2 C -0.10 -1.73 2.78 -10.80 -0.03 -1.76 16 3 C -0.14 -2.02 9.19 71.98 0.66 -1.35 16 4 C -0.10 -1.67 4.15 30.59 0.13 -1.54 16 5 C -0.09 -1.84 2.20 -10.79 -0.02 -1.86 16 6 H 0.06 1.54 5.82 -2.39 -0.01 1.52 16 7 C -0.15 -3.43 8.71 71.98 0.63 -2.80 16 8 C -0.11 -2.14 4.22 30.59 0.13 -2.01 16 9 C 0.15 4.07 2.12 44.99 0.10 4.16 16 10 H 0.06 1.77 4.66 -2.39 -0.01 1.76 16 11 C -0.16 -4.14 9.40 71.98 0.68 -3.46 16 12 N -0.74 -23.47 4.59 -318.52 -1.46 -24.93 16 13 C 0.13 5.29 6.65 38.67 0.26 5.55 16 14 C -0.17 -8.25 8.73 22.15 0.19 -8.06 16 15 C -0.14 -7.76 8.63 22.48 0.19 -7.57 16 16 C 0.03 1.84 5.57 -21.27 -0.12 1.72 16 17 C -0.51 -29.21 9.03 23.38 0.21 -29.00 16 18 H 0.07 3.66 7.90 -2.91 -0.02 3.64 16 19 C 0.03 1.67 5.15 85.23 0.44 2.11 16 20 N -0.84 -47.09 10.96 21.82 0.24 -46.85 16 21 Si 0.98 41.06 29.59 68.60 2.03 43.09 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 25 C -0.19 -9.91 9.74 22.48 0.22 -9.69 16 26 C -0.17 -7.55 9.82 22.15 0.22 -7.33 16 27 H 0.04 0.99 6.46 -2.39 -0.02 0.97 16 28 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.20 6.34 -2.39 -0.02 1.19 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.03 0.97 6.46 -2.39 -0.02 0.96 16 38 H 0.05 1.20 6.46 -2.38 -0.02 1.18 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.03 1.03 7.63 -2.38 -0.02 1.01 16 44 H 0.39 10.94 8.60 -92.71 -0.80 10.14 16 45 H 0.10 4.44 6.03 -2.91 -0.02 4.42 16 46 H 0.10 5.57 6.19 -2.91 -0.02 5.56 16 47 H 0.28 14.32 8.30 -92.70 -0.77 13.55 16 48 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 49 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -61.68 376.19 5.44 -56.24 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: 0.11 Total: 37.53 kcal Atomic # 6 Polarization: -69.59 SS G_CDS: 4.52 Total: -65.07 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.22 Total: -71.78 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -61.68 5.44 -56.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560742377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.140 kcal (2) G-P(sol) polarization free energy of solvation -61.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds