Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47437 * 2 1 4 4 C 1.53004 * 109.47215 * 240.00224 * 2 1 3 5 5 C 1.50698 * 109.47136 * 64.99757 * 4 2 1 6 6 H 1.08007 * 120.00298 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00334 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00536 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99424 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46956 * 90.00018 * 9 7 5 11 11 H 1.48502 * 109.46727 * 209.99349 * 9 7 5 12 12 H 1.48494 * 109.47485 * 329.99611 * 9 7 5 13 13 C 1.52998 * 109.47135 * 120.00132 * 2 1 3 14 14 N 1.46500 * 109.47233 * 294.99696 * 13 2 1 15 15 C 1.46500 * 120.00068 * 270.00238 * 14 13 2 16 16 C 1.39676 * 119.99636 * 89.99810 * 14 13 2 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 14 13 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 14 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.50698 * 119.92407 * 179.69843 * 19 18 17 21 21 C 1.52999 * 109.47182 * 60.00006 * 20 19 18 22 22 C 1.52998 * 109.47075 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47260 * 299.99857 * 20 19 18 24 24 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 25 25 C 1.38112 * 120.07587 * 0.55318 * 24 19 18 26 26 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47064 * 299.99940 * 1 2 3 28 28 H 1.09001 * 109.46902 * 59.99859 * 1 2 3 29 29 H 1.09001 * 109.47212 * 185.00155 * 4 2 1 30 30 H 1.09000 * 109.46745 * 305.00000 * 4 2 1 31 31 H 0.96993 * 120.00637 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47304 * 174.99892 * 13 2 1 33 33 H 1.08993 * 109.46991 * 55.00192 * 13 2 1 34 34 H 1.08999 * 109.46842 * 269.99886 * 15 14 13 35 35 H 1.08993 * 109.47033 * 29.99548 * 15 14 13 36 36 H 1.09002 * 109.46727 * 150.00224 * 15 14 13 37 37 H 1.08000 * 120.03932 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 39 39 H 1.09007 * 109.46779 * 59.99702 * 21 20 19 40 40 H 1.09001 * 109.47047 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47240 * 300.00270 * 21 20 19 42 42 H 1.09004 * 109.46800 * 60.00083 * 22 20 19 43 43 H 1.09001 * 109.47228 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.47175 * 300.00662 * 22 20 19 45 45 H 1.09006 * 109.46853 * 60.00416 * 23 20 19 46 46 H 1.08993 * 109.47374 * 179.97438 * 23 20 19 47 47 H 1.09004 * 109.47450 * 300.00429 * 23 20 19 48 48 H 1.08002 * 119.96005 * 180.25011 * 24 19 18 49 49 H 1.07998 * 120.03717 * 179.70130 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9747 -2.3757 7 6 1.9932 -0.4016 -3.7284 8 7 1.6457 0.2779 -4.7994 9 14 2.9636 -1.9882 -3.9028 10 1 2.0244 -3.1324 -4.0201 11 1 3.8125 -1.9179 -5.1193 12 1 3.8252 -2.1754 -2.7080 13 6 2.0399 -0.7213 1.2492 14 7 1.6524 0.0353 2.4424 15 6 2.5428 1.0696 2.9751 16 6 0.4341 -0.2294 3.0720 17 6 0.0653 0.4866 4.2037 18 6 -1.1398 0.2220 4.8241 19 6 -1.9765 -0.7586 4.3233 20 6 -3.2876 -1.0493 5.0069 21 6 -4.1535 0.2122 5.0069 22 6 -4.0156 -2.1681 4.2592 23 6 -3.0248 -1.4875 6.4490 24 6 -1.6150 -1.4694 3.1935 25 6 -0.4112 -1.2098 2.5681 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 1.8929 -0.0450 -5.6800 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 3.2230 0.6246 3.7012 35 1 3.1180 1.5088 2.1601 36 1 1.9497 1.8448 3.4603 37 1 0.7203 1.2495 4.5980 38 1 -1.4269 0.7781 5.7043 39 1 -4.3407 0.5243 3.9794 40 1 -5.1020 0.0018 5.5010 41 1 -3.6346 1.0090 5.5398 42 1 -3.3985 -3.0667 4.2596 43 1 -4.9638 -2.3787 4.7539 44 1 -4.2028 -1.8565 3.2316 45 1 -2.5060 -0.6906 6.9820 46 1 -3.9731 -1.6973 6.9436 47 1 -2.4079 -2.3861 6.4491 48 1 -2.2725 -2.2318 2.8026 49 1 -0.1274 -1.7687 1.6887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560742998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = 8.666341 kcal Electronic energy + Delta-G solvation = -23538.966064 eV Core-core repulsion = 20465.163572 eV Total energy + Delta-G solvation = -3073.802492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99073 -37.98367 -35.61700 -34.05132 -32.14472 -30.92842 -29.11021 -28.10443 -27.31648 -27.25792 -26.78284 -24.81590 -22.93297 -21.71434 -21.05250 -19.31186 -18.72435 -17.42989 -16.69196 -15.58525 -15.38774 -14.74661 -14.63313 -14.30612 -14.20440 -13.94840 -13.77969 -13.31179 -13.22947 -12.98383 -12.68131 -12.57608 -12.38116 -12.17413 -12.00477 -11.80067 -11.76193 -11.68880 -11.54787 -11.16562 -11.08839 -10.91244 -10.73152 -10.69692 -10.52020 -10.34189 -9.88000 -9.73147 -9.64831 -9.31054 -9.03692 -8.64866 -8.53398 -6.90098 -6.03308 -4.00647 1.68516 1.82423 3.30004 3.37581 3.40146 3.40770 4.07579 4.45091 4.66856 4.73679 4.97056 5.08182 5.12794 5.28185 5.30719 5.31021 5.46475 5.48153 5.49895 5.52158 5.60548 5.67728 5.71255 5.78395 5.78762 5.79863 5.88406 5.92288 5.94572 5.99667 6.00612 6.15533 6.18667 6.24453 6.24916 6.36089 6.50034 6.56561 6.68473 6.80592 6.93446 6.95590 7.10930 7.11669 7.25979 7.41478 7.55710 7.78532 7.81685 8.55836 9.02227 9.59152 11.10154 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.003520 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.130786 B = 7952.039146 C = 8561.612187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 H 0.062 0.938 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.122 3.878 14 N -0.627 5.627 15 C 0.095 3.905 16 C 0.224 3.776 17 C -0.205 4.205 18 C -0.070 4.070 19 C -0.140 4.140 20 C -0.020 4.020 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.074 4.074 25 C -0.190 4.190 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.120 0.880 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -2.509 22.372 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.113 4.113 3 H 0.080 0.920 4 C -0.045 4.045 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.000 4.000 14 N -0.336 5.336 15 C -0.049 4.049 16 C 0.121 3.879 17 C -0.228 4.228 18 C -0.089 4.089 19 C -0.142 4.142 20 C -0.020 4.020 21 C -0.195 4.195 22 C -0.200 4.200 23 C -0.193 4.193 24 C -0.093 4.093 25 C -0.212 4.212 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.138 0.862 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.224 -2.466 22.088 23.080 hybrid contribution 0.617 -0.701 -0.417 1.023 sum -5.608 -3.167 21.671 22.608 Atomic orbital electron populations 1.21861 0.95527 1.00626 1.00854 1.21453 0.96239 0.99780 0.93809 0.91965 1.19587 0.95770 0.95817 0.93366 1.21109 1.35335 1.09580 0.89069 0.90932 1.25031 0.95653 0.96942 0.95939 1.69908 1.47148 1.39309 0.98021 0.86807 0.80640 0.84345 0.77636 1.20341 1.21487 1.19088 1.21755 0.99395 0.94945 0.83941 1.46590 1.17576 1.39983 1.29470 1.21574 0.93557 0.90761 0.99002 1.17835 0.85766 0.93158 0.91158 1.20585 0.99289 1.04235 0.98685 1.20566 0.93225 0.96541 0.98542 1.19410 0.96751 0.99957 0.98081 1.19322 0.92477 0.95450 0.94774 1.21889 0.98790 0.96805 1.01974 1.21951 0.99667 0.98042 1.00384 1.21880 1.01058 1.01301 0.95101 1.20880 0.95551 0.98468 0.94407 1.20933 0.95855 1.01395 1.02996 0.93773 0.94070 0.92037 0.96788 0.97040 0.92803 0.91342 0.91187 0.93920 0.91379 0.91789 0.86576 0.87007 0.92499 0.92932 0.92719 0.92408 0.92870 0.92219 0.92742 0.92935 0.92683 0.86194 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.44 37.15 0.28 -2.25 16 2 C -0.09 -1.81 2.54 -90.62 -0.23 -2.04 16 3 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 4 C -0.01 -0.17 3.52 -27.88 -0.10 -0.27 16 5 C -0.51 -14.40 8.96 -34.44 -0.31 -14.71 16 6 H 0.07 2.21 7.30 -52.48 -0.38 1.83 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.12 1.95 4.95 -4.04 -0.02 1.93 16 14 N -0.63 -9.12 2.87 -179.63 -0.52 -9.63 16 15 C 0.09 1.13 10.19 59.85 0.61 1.74 16 16 C 0.22 3.26 5.38 -83.79 -0.45 2.81 16 17 C -0.21 -2.69 9.21 -39.38 -0.36 -3.05 16 18 C -0.07 -0.85 8.70 -39.61 -0.34 -1.19 16 19 C -0.14 -1.68 4.76 -104.59 -0.50 -2.18 16 20 C -0.02 -0.20 0.85 -155.66 -0.13 -0.33 16 21 C -0.14 -1.26 8.29 37.16 0.31 -0.95 16 22 C -0.14 -1.31 7.13 37.16 0.26 -1.04 16 23 C -0.14 -1.18 8.28 37.16 0.31 -0.87 16 24 C -0.07 -0.98 8.97 -39.61 -0.36 -1.33 16 25 C -0.19 -2.77 7.15 -39.38 -0.28 -3.05 16 26 H 0.04 0.81 6.66 -51.93 -0.35 0.46 16 27 H 0.04 0.74 5.86 -51.93 -0.30 0.44 16 28 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 29 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 33 H 0.07 1.10 6.20 -51.93 -0.32 0.77 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.06 0.69 6.20 -51.93 -0.32 0.37 16 37 H 0.12 1.35 6.14 -52.49 -0.32 1.02 16 38 H 0.11 1.14 7.09 -52.49 -0.37 0.77 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.48 7.38 -51.93 -0.38 0.10 16 42 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.57 7.50 -51.93 -0.39 0.18 16 45 H 0.05 0.46 7.38 -51.93 -0.38 0.07 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.12 1.41 5.88 -52.49 -0.31 1.10 16 49 H 0.13 1.94 4.40 -52.49 -0.23 1.70 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -30.27 365.52 -8.87 -39.14 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.55 Total: 0.18 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -1.41 Total: -25.01 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.26 Total: -36.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.27 -8.87 -39.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560742998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.806 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds