Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47437 * 2 1 4 4 C 1.53004 * 109.47215 * 240.00224 * 2 1 3 5 5 C 1.50698 * 109.47136 * 64.99757 * 4 2 1 6 6 H 1.08007 * 120.00298 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00334 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00536 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99424 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46956 * 90.00018 * 9 7 5 11 11 H 1.48502 * 109.46727 * 209.99349 * 9 7 5 12 12 H 1.48494 * 109.47485 * 329.99611 * 9 7 5 13 13 C 1.52998 * 109.47135 * 120.00132 * 2 1 3 14 14 N 1.46500 * 109.47233 * 294.99696 * 13 2 1 15 15 C 1.46500 * 120.00068 * 270.00238 * 14 13 2 16 16 C 1.39676 * 119.99636 * 89.99810 * 14 13 2 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 14 13 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 14 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.50698 * 119.92407 * 179.69843 * 19 18 17 21 21 C 1.52999 * 109.47182 * 60.00006 * 20 19 18 22 22 C 1.52998 * 109.47075 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47260 * 299.99857 * 20 19 18 24 24 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 25 25 C 1.38112 * 120.07587 * 0.55318 * 24 19 18 26 26 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47064 * 299.99940 * 1 2 3 28 28 H 1.09001 * 109.46902 * 59.99859 * 1 2 3 29 29 H 1.09001 * 109.47212 * 185.00155 * 4 2 1 30 30 H 1.09000 * 109.46745 * 305.00000 * 4 2 1 31 31 H 0.96993 * 120.00637 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47304 * 174.99892 * 13 2 1 33 33 H 1.08993 * 109.46991 * 55.00192 * 13 2 1 34 34 H 1.08999 * 109.46842 * 269.99886 * 15 14 13 35 35 H 1.08993 * 109.47033 * 29.99548 * 15 14 13 36 36 H 1.09002 * 109.46727 * 150.00224 * 15 14 13 37 37 H 1.08000 * 120.03932 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 39 39 H 1.09007 * 109.46779 * 59.99702 * 21 20 19 40 40 H 1.09001 * 109.47047 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47240 * 300.00270 * 21 20 19 42 42 H 1.09004 * 109.46800 * 60.00083 * 22 20 19 43 43 H 1.09001 * 109.47228 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.47175 * 300.00662 * 22 20 19 45 45 H 1.09006 * 109.46853 * 60.00416 * 23 20 19 46 46 H 1.08993 * 109.47374 * 179.97438 * 23 20 19 47 47 H 1.09004 * 109.47450 * 300.00429 * 23 20 19 48 48 H 1.08002 * 119.96005 * 180.25011 * 24 19 18 49 49 H 1.07998 * 120.03717 * 179.70130 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9747 -2.3757 7 6 1.9932 -0.4016 -3.7284 8 7 1.6457 0.2779 -4.7994 9 14 2.9636 -1.9882 -3.9028 10 1 2.0244 -3.1324 -4.0201 11 1 3.8125 -1.9179 -5.1193 12 1 3.8252 -2.1754 -2.7080 13 6 2.0399 -0.7213 1.2492 14 7 1.6524 0.0353 2.4424 15 6 2.5428 1.0696 2.9751 16 6 0.4341 -0.2294 3.0720 17 6 0.0653 0.4866 4.2037 18 6 -1.1398 0.2220 4.8241 19 6 -1.9765 -0.7586 4.3233 20 6 -3.2876 -1.0493 5.0069 21 6 -4.1535 0.2122 5.0069 22 6 -4.0156 -2.1681 4.2592 23 6 -3.0248 -1.4875 6.4490 24 6 -1.6150 -1.4694 3.1935 25 6 -0.4112 -1.2098 2.5681 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 1.8929 -0.0450 -5.6800 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 3.2230 0.6246 3.7012 35 1 3.1180 1.5088 2.1601 36 1 1.9497 1.8448 3.4603 37 1 0.7203 1.2495 4.5980 38 1 -1.4269 0.7781 5.7043 39 1 -4.3407 0.5243 3.9794 40 1 -5.1020 0.0018 5.5010 41 1 -3.6346 1.0090 5.5398 42 1 -3.3985 -3.0667 4.2596 43 1 -4.9638 -2.3787 4.7539 44 1 -4.2028 -1.8565 3.2316 45 1 -2.5060 -0.6906 6.9820 46 1 -3.9731 -1.6973 6.9436 47 1 -2.4079 -2.3861 6.4491 48 1 -2.2725 -2.2318 2.8026 49 1 -0.1274 -1.7687 1.6887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560742998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = -5.526182 kcal Electronic energy + Delta-G solvation = -23539.581498 eV Core-core repulsion = 20465.163572 eV Total energy + Delta-G solvation = -3074.417926 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99273 -39.04515 -36.88857 -35.40036 -34.10422 -32.00475 -30.09389 -29.74649 -28.34568 -27.99993 -27.92657 -26.06655 -24.51995 -22.82515 -22.19339 -20.75156 -19.74903 -19.02265 -18.27971 -16.76028 -16.36875 -16.11105 -15.90032 -15.71921 -15.21486 -15.03138 -14.93046 -14.73900 -14.37714 -14.19527 -14.03466 -13.53302 -13.46029 -13.42252 -13.13463 -13.02099 -12.93268 -12.66446 -12.55989 -12.48209 -12.45955 -12.26528 -12.06159 -11.81651 -11.72611 -11.50108 -11.42080 -11.35956 -11.20755 -11.05960 -10.74760 -10.34844 -9.66393 -8.26853 -7.97249 -6.29748 0.67329 0.81987 1.36388 1.37838 1.49562 2.32820 2.37285 3.07500 3.08557 3.87252 3.89989 4.01231 4.13929 4.19046 4.23777 4.26796 4.36009 4.44053 4.53004 4.64703 4.65487 4.69864 4.71358 4.80932 4.86557 4.89411 4.89547 4.96979 4.97751 5.01182 5.06010 5.10934 5.11369 5.18627 5.23780 5.28881 5.29975 5.34660 5.43539 5.49223 5.54610 5.58606 5.63589 5.70284 5.74896 5.97465 6.13072 6.31224 6.48241 6.73019 6.77996 7.33790 8.90239 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.003520 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.130786 B = 7952.039146 C = 8561.612187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.086 4.086 3 H 0.045 0.955 4 C -0.004 4.004 5 C -0.519 4.519 6 H 0.029 0.971 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.242 1.242 13 C 0.134 3.866 14 N -0.634 5.634 15 C 0.092 3.908 16 C 0.204 3.796 17 C -0.208 4.208 18 C -0.072 4.072 19 C -0.139 4.139 20 C -0.022 4.022 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.133 4.133 24 C -0.085 4.085 25 C -0.207 4.207 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.264 0.736 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.128 0.872 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -3.878 25.061 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.106 4.106 3 H 0.064 0.936 4 C -0.042 4.042 5 C -0.557 4.557 6 H 0.047 0.953 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.166 1.166 13 C 0.010 3.990 14 N -0.344 5.344 15 C -0.051 4.051 16 C 0.102 3.898 17 C -0.231 4.231 18 C -0.091 4.091 19 C -0.141 4.141 20 C -0.022 4.022 21 C -0.193 4.193 22 C -0.200 4.200 23 C -0.190 4.190 24 C -0.103 4.103 25 C -0.229 4.229 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.146 0.854 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.958 -3.826 24.817 25.808 hybrid contribution 0.405 -0.174 -1.210 1.288 sum -5.552 -4.000 23.607 24.579 Atomic orbital electron populations 1.21717 0.95685 1.00662 0.99418 1.21334 0.95987 0.98922 0.94361 0.93625 1.19525 0.96204 0.95659 0.92785 1.21428 1.34347 1.08571 0.91386 0.95297 1.26030 0.97012 1.01082 0.95430 1.70075 1.49117 1.41725 0.98754 0.85668 0.79331 0.79285 0.78423 1.19338 1.21299 1.16554 1.21477 0.99908 0.94712 0.82862 1.46585 1.18141 1.40614 1.29014 1.21710 0.93590 0.90556 0.99242 1.18016 0.85929 0.93821 0.92006 1.20830 0.99874 1.04195 0.98178 1.20858 0.92768 0.96447 0.99020 1.19732 0.97611 0.99227 0.97499 1.19389 0.91424 0.95976 0.95369 1.21878 0.99483 0.96536 1.01424 1.21949 1.00311 0.97765 1.00022 1.21852 1.01821 1.01132 0.94237 1.21068 0.95325 0.99007 0.94900 1.20963 0.96763 1.02009 1.03200 0.92988 0.93029 0.95710 0.95964 0.96252 0.92679 0.90102 0.90687 0.92230 0.91753 0.90784 0.85099 0.84878 0.93786 0.91409 0.92325 0.92541 0.91442 0.93072 0.92336 0.91492 0.93248 0.85416 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 7.44 71.98 0.54 -4.09 16 2 C -0.09 -3.35 2.54 -10.80 -0.03 -3.38 16 3 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.00 -0.18 3.52 29.85 0.10 -0.07 16 5 C -0.52 -30.03 8.96 25.60 0.23 -29.80 16 6 H 0.03 1.87 7.30 -2.91 -0.02 1.84 16 7 C 0.00 0.03 5.47 84.66 0.46 0.49 16 8 N -0.96 -60.84 13.96 21.45 0.30 -60.54 16 9 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 13 C 0.13 4.10 4.95 86.38 0.43 4.53 16 14 N -0.63 -17.52 2.87 -722.22 -2.07 -19.59 16 15 C 0.09 2.01 10.19 127.77 1.30 3.31 16 16 C 0.20 5.69 5.38 38.21 0.21 5.90 16 17 C -0.21 -5.05 9.21 22.40 0.21 -4.84 16 18 C -0.07 -1.59 8.70 22.25 0.19 -1.39 16 19 C -0.14 -3.10 4.76 -19.84 -0.09 -3.20 16 20 C -0.02 -0.38 0.85 -52.93 -0.05 -0.42 16 21 C -0.14 -2.19 8.29 71.98 0.60 -1.60 16 22 C -0.14 -2.37 7.13 71.98 0.51 -1.86 16 23 C -0.13 -1.95 8.28 71.98 0.60 -1.36 16 24 C -0.08 -2.14 8.97 22.25 0.20 -1.94 16 25 C -0.21 -5.91 7.15 22.40 0.16 -5.75 16 26 H 0.05 1.93 6.66 -2.39 -0.02 1.91 16 27 H 0.05 1.89 5.86 -2.38 -0.01 1.88 16 28 H 0.02 1.11 6.95 -2.39 -0.02 1.10 16 29 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 30 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 31 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 33 H 0.07 2.23 6.20 -2.39 -0.01 2.22 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 36 H 0.07 1.45 6.20 -2.39 -0.01 1.44 16 37 H 0.13 2.70 6.14 -2.91 -0.02 2.68 16 38 H 0.13 2.30 7.09 -2.91 -0.02 2.28 16 39 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.89 7.38 -2.39 -0.02 0.87 16 42 H 0.06 0.94 7.52 -2.39 -0.02 0.92 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.92 7.50 -2.39 -0.02 0.90 16 45 H 0.06 0.81 7.38 -2.38 -0.02 0.79 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.13 2.92 5.88 -2.91 -0.02 2.90 16 49 H 0.12 3.50 4.40 -2.91 -0.01 3.49 16 Total: -1.00 -66.70 365.52 6.52 -60.18 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.85 Total: 19.22 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 5.57 Total: -45.47 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -1.77 Total: -80.13 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -66.70 6.52 -60.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560742998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.649 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds