Wall clock time and date at job start Tue Mar 31 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46659 * 2 1 4 4 C 1.52996 * 109.46981 * 60.00411 * 3 2 1 5 5 C 1.53004 * 109.47209 * 299.99977 * 3 2 1 6 6 C 1.50703 * 109.46867 * 180.02562 * 3 2 1 7 7 C 1.38290 * 119.92501 * 0.29777 * 6 3 2 8 8 C 1.38103 * 120.07421 * 180.25789 * 7 6 3 9 9 C 1.38918 * 119.92232 * 359.46620 * 8 7 6 10 10 N 1.39673 * 120.07035 * 180.27899 * 9 8 7 11 11 C 1.46507 * 119.99644 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47446 * 305.00204 * 12 11 10 14 14 C 1.53003 * 109.47064 * 65.00493 * 12 11 10 15 15 C 1.53005 * 109.47230 * 185.00107 * 12 11 10 16 16 C 1.50698 * 109.47107 * 175.00101 * 15 12 11 17 17 H 1.07992 * 120.00420 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99587 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99570 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00265 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47135 * 89.99608 * 20 18 16 22 22 H 1.48500 * 109.47150 * 209.99846 * 20 18 16 23 23 H 1.48503 * 109.47082 * 329.99739 * 20 18 16 24 24 C 1.38912 * 119.85072 * 0.25753 * 9 8 7 25 25 C 1.38102 * 119.92404 * 359.97438 * 24 9 8 26 26 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47262 * 299.99781 * 1 2 3 28 28 H 1.09007 * 109.47627 * 60.00018 * 1 2 3 29 29 H 1.08999 * 109.47262 * 240.00219 * 2 1 3 30 30 H 1.08993 * 109.47621 * 119.99840 * 2 1 3 31 31 H 1.09009 * 109.47023 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47033 * 299.98969 * 4 3 2 33 33 H 1.08993 * 109.47410 * 60.00092 * 4 3 2 34 34 H 1.08999 * 109.47206 * 300.00083 * 5 3 2 35 35 H 1.08992 * 109.46924 * 60.00395 * 5 3 2 36 36 H 1.09002 * 109.46895 * 180.02562 * 5 3 2 37 37 H 1.07998 * 119.96103 * 0.02562 * 7 6 3 38 38 H 1.08002 * 120.04122 * 179.75037 * 8 7 6 39 39 H 0.97003 * 120.00581 * 359.97438 * 10 9 8 40 40 H 1.08996 * 109.47159 * 299.99949 * 11 10 9 41 41 H 1.09005 * 109.46930 * 60.00244 * 11 10 9 42 42 H 1.08999 * 109.47225 * 59.99576 * 14 12 11 43 43 H 1.09002 * 109.47276 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.46875 * 299.99259 * 14 12 11 45 45 H 1.08996 * 109.47054 * 295.00124 * 15 12 11 46 46 H 1.08998 * 109.46785 * 55.00294 * 15 12 11 47 47 H 0.96996 * 119.99247 * 179.97438 * 19 18 16 48 48 H 1.08001 * 120.03561 * 180.02562 * 24 9 8 49 49 H 1.07998 * 119.96158 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 1.2493 5 6 1.5298 2.1638 -1.2493 6 6 3.5469 1.4427 -0.0006 7 6 4.2368 0.2442 -0.0073 8 6 5.6178 0.2406 -0.0026 9 6 6.3139 1.4428 -0.0022 10 7 7.7106 1.4428 -0.0033 11 6 8.4431 2.7116 -0.0035 12 6 9.9473 2.4321 -0.0041 13 1 10.1972 1.7861 0.8376 14 6 10.3369 1.7397 -1.3117 15 6 10.7114 3.7517 0.1215 16 6 12.1864 3.4684 0.2444 17 1 12.5433 2.4492 0.2336 18 6 13.0804 4.5106 0.3696 19 7 14.3677 4.2634 0.4763 20 14 12.4632 6.2736 0.3875 21 1 12.1728 6.6822 1.7852 22 1 13.5022 7.1676 -0.1839 23 1 11.2240 6.3725 -0.4248 24 6 5.6177 2.6448 -0.0013 25 6 4.2367 2.6411 -0.0012 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8935 3.1914 1.2495 32 1 0.4399 2.1638 1.2492 33 1 1.8933 1.6500 2.1392 34 1 1.8932 1.6501 -2.1393 35 1 0.4399 2.1638 -1.2492 36 1 1.8935 3.1914 -1.2494 37 1 3.6950 -0.6901 -0.0125 38 1 6.1561 -0.6957 -0.0037 39 1 8.1957 0.6027 -0.0039 40 1 8.1791 3.2834 -0.8931 41 1 8.1804 3.2829 0.8869 42 1 10.0870 2.3856 -2.1533 43 1 11.4084 1.5401 -1.3119 44 1 9.7926 0.7995 -1.4011 45 1 10.5311 4.3615 -0.7638 46 1 10.3691 4.2868 1.0072 47 1 14.9966 4.9966 0.5640 48 1 6.1558 3.5812 -0.0014 49 1 3.6948 3.5753 -0.0009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560804538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:31 Heat of formation + Delta-G solvation = -10.344496 kcal Electronic energy + Delta-G solvation = -22625.983994 eV Core-core repulsion = 19551.357130 eV Total energy + Delta-G solvation = -3074.626864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99922 -37.91180 -36.18861 -33.73407 -32.09699 -31.25349 -30.21415 -28.61001 -27.42997 -27.33684 -25.74129 -24.59844 -22.88539 -21.80688 -21.32442 -19.31438 -18.81861 -17.30755 -16.86620 -15.84917 -15.57116 -14.93598 -14.76382 -14.48808 -14.28185 -13.96751 -13.68434 -13.48964 -13.30500 -13.27761 -12.98005 -12.83941 -12.29943 -12.20520 -12.14291 -11.97939 -11.90422 -11.79762 -11.36692 -11.19741 -11.07359 -10.94592 -10.80224 -10.59440 -10.51362 -10.32941 -10.09812 -9.78732 -9.66895 -9.57393 -9.15269 -8.79578 -8.56681 -7.12936 -6.07128 -4.05039 1.56817 1.73989 3.28502 3.36369 3.39182 3.71362 3.98144 4.42429 4.52493 4.57630 4.77318 5.03481 5.11295 5.15992 5.17023 5.24552 5.26026 5.36180 5.41247 5.51233 5.52845 5.56622 5.61387 5.72190 5.73387 5.77417 5.78589 5.80745 5.87941 5.91165 5.97644 6.09630 6.14452 6.16950 6.21557 6.27590 6.31591 6.48990 6.58966 6.67853 6.81394 6.82392 6.97267 7.02878 7.16721 7.35951 7.56468 7.75840 7.96289 8.50196 8.97223 9.55095 11.06062 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.033985 B = 0.002585 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.701309 B =10828.834792 C =11349.421732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.073 4.073 8 C -0.202 4.202 9 C 0.221 3.779 10 N -0.742 5.742 11 C 0.124 3.876 12 C -0.087 4.087 13 H 0.067 0.933 14 C -0.133 4.133 15 C -0.006 4.006 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.065 3.935 19 N -0.903 5.903 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.199 4.199 25 C -0.065 4.065 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.398 0.602 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.018 0.982 46 H 0.012 0.988 47 H 0.263 0.737 48 H 0.119 0.881 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.023 -7.002 -1.589 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.015 4.015 4 C -0.197 4.197 5 C -0.197 4.197 6 C -0.144 4.144 7 C -0.091 4.091 8 C -0.225 4.225 9 C 0.116 3.884 10 N -0.369 5.369 11 C 0.001 3.999 12 C -0.106 4.106 13 H 0.086 0.914 14 C -0.191 4.191 15 C -0.044 4.044 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.221 4.221 25 C -0.084 4.084 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.233 0.767 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.728 -6.706 -1.575 27.602 hybrid contribution 0.199 0.710 0.057 0.740 sum -26.529 -5.996 -1.518 27.241 Atomic orbital electron populations 1.21916 0.96108 1.01346 1.02004 1.21647 0.95568 0.96007 1.01962 1.19321 0.91215 0.95376 0.95545 1.21939 1.00455 1.00210 0.97055 1.21943 1.00458 1.00206 0.97054 1.19412 0.94115 0.93052 1.07827 1.20800 0.93142 0.97465 0.97722 1.20556 0.94367 0.96093 1.11510 1.17927 0.83972 0.93773 0.92705 1.44962 1.02177 1.08858 1.80920 1.21620 0.92772 0.85151 1.00396 1.21238 0.90923 1.00137 0.98300 0.91412 1.21727 1.02296 0.98182 0.96857 1.19568 0.96310 0.92164 0.96379 1.21080 0.89097 0.95149 1.50074 0.90834 1.25032 0.94785 0.99101 0.94652 1.69912 1.01531 1.32154 1.50603 0.86799 0.78874 0.85080 0.78651 1.20322 1.21413 1.19011 1.20653 0.94221 0.96627 1.10638 1.20645 0.93211 0.97216 0.97324 0.93085 0.92476 0.92487 0.91799 0.91792 0.92681 0.92520 0.92666 0.92681 0.92522 0.92683 0.86278 0.86676 0.76716 0.92709 0.92703 0.93533 0.91253 0.94844 0.96371 0.96923 0.92741 0.86257 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.21 37.15 0.34 -0.67 16 2 C -0.11 -0.88 3.65 -26.73 -0.10 -0.98 16 3 C -0.01 -0.13 0.63 -155.66 -0.10 -0.22 16 4 C -0.14 -1.14 7.93 37.16 0.29 -0.85 16 5 C -0.14 -1.14 7.93 37.16 0.29 -0.84 16 6 C -0.14 -1.56 4.76 -104.59 -0.50 -2.06 16 7 C -0.07 -0.82 8.97 -39.61 -0.36 -1.17 16 8 C -0.20 -2.51 9.90 -39.38 -0.39 -2.90 16 9 C 0.22 3.06 6.65 -83.78 -0.56 2.50 16 10 N -0.74 -10.52 5.46 -58.63 -0.32 -10.84 16 11 C 0.12 1.98 4.30 -4.04 -0.02 1.96 16 12 C -0.09 -1.62 2.37 -90.62 -0.22 -1.84 16 13 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 15 C -0.01 -0.15 3.52 -27.88 -0.10 -0.24 16 16 C -0.52 -14.23 8.96 -34.44 -0.31 -14.54 16 17 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 20 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 24 C -0.20 -2.68 9.31 -39.38 -0.37 -3.05 16 25 C -0.07 -0.78 8.70 -39.62 -0.34 -1.12 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 28 H 0.06 0.35 6.43 -51.92 -0.33 0.02 16 29 H 0.06 0.50 7.49 -51.93 -0.39 0.11 16 30 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 31 H 0.05 0.46 7.38 -51.92 -0.38 0.07 16 32 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 36 H 0.05 0.45 7.38 -51.93 -0.38 0.07 16 37 H 0.12 1.11 5.88 -52.49 -0.31 0.81 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.40 5.25 7.67 -40.82 -0.31 4.94 16 40 H 0.05 0.87 7.95 -51.93 -0.41 0.46 16 41 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 44 H 0.03 0.50 7.18 -51.93 -0.37 0.13 16 45 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 46 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.12 1.61 6.73 -52.49 -0.35 1.25 16 49 H 0.11 1.18 7.09 -52.49 -0.37 0.81 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -29.35 370.82 -9.45 -38.80 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.64 Total: 2.68 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.18 Total: -26.28 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.45 Total: -37.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.35 -9.45 -38.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560804538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.457 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds