Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46659 * 2 1 4 4 C 1.52996 * 109.46981 * 60.00411 * 3 2 1 5 5 C 1.53004 * 109.47209 * 299.99977 * 3 2 1 6 6 C 1.50703 * 109.46867 * 180.02562 * 3 2 1 7 7 C 1.38290 * 119.92501 * 0.29777 * 6 3 2 8 8 C 1.38103 * 120.07421 * 180.25789 * 7 6 3 9 9 C 1.38918 * 119.92232 * 359.46620 * 8 7 6 10 10 N 1.39673 * 120.07035 * 180.27899 * 9 8 7 11 11 C 1.46507 * 119.99644 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47446 * 305.00204 * 12 11 10 14 14 C 1.53003 * 109.47064 * 65.00493 * 12 11 10 15 15 C 1.53005 * 109.47230 * 185.00107 * 12 11 10 16 16 C 1.50698 * 109.47107 * 175.00101 * 15 12 11 17 17 H 1.07992 * 120.00420 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99587 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99570 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00265 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47135 * 89.99608 * 20 18 16 22 22 H 1.48500 * 109.47150 * 209.99846 * 20 18 16 23 23 H 1.48503 * 109.47082 * 329.99739 * 20 18 16 24 24 C 1.38912 * 119.85072 * 0.25753 * 9 8 7 25 25 C 1.38102 * 119.92404 * 359.97438 * 24 9 8 26 26 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47262 * 299.99781 * 1 2 3 28 28 H 1.09007 * 109.47627 * 60.00018 * 1 2 3 29 29 H 1.08999 * 109.47262 * 240.00219 * 2 1 3 30 30 H 1.08993 * 109.47621 * 119.99840 * 2 1 3 31 31 H 1.09009 * 109.47023 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47033 * 299.98969 * 4 3 2 33 33 H 1.08993 * 109.47410 * 60.00092 * 4 3 2 34 34 H 1.08999 * 109.47206 * 300.00083 * 5 3 2 35 35 H 1.08992 * 109.46924 * 60.00395 * 5 3 2 36 36 H 1.09002 * 109.46895 * 180.02562 * 5 3 2 37 37 H 1.07998 * 119.96103 * 0.02562 * 7 6 3 38 38 H 1.08002 * 120.04122 * 179.75037 * 8 7 6 39 39 H 0.97003 * 120.00581 * 359.97438 * 10 9 8 40 40 H 1.08996 * 109.47159 * 299.99949 * 11 10 9 41 41 H 1.09005 * 109.46930 * 60.00244 * 11 10 9 42 42 H 1.08999 * 109.47225 * 59.99576 * 14 12 11 43 43 H 1.09002 * 109.47276 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.46875 * 299.99259 * 14 12 11 45 45 H 1.08996 * 109.47054 * 295.00124 * 15 12 11 46 46 H 1.08998 * 109.46785 * 55.00294 * 15 12 11 47 47 H 0.96996 * 119.99247 * 179.97438 * 19 18 16 48 48 H 1.08001 * 120.03561 * 180.02562 * 24 9 8 49 49 H 1.07998 * 119.96158 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 1.2493 5 6 1.5298 2.1638 -1.2493 6 6 3.5469 1.4427 -0.0006 7 6 4.2368 0.2442 -0.0073 8 6 5.6178 0.2406 -0.0026 9 6 6.3139 1.4428 -0.0022 10 7 7.7106 1.4428 -0.0033 11 6 8.4431 2.7116 -0.0035 12 6 9.9473 2.4321 -0.0041 13 1 10.1972 1.7861 0.8376 14 6 10.3369 1.7397 -1.3117 15 6 10.7114 3.7517 0.1215 16 6 12.1864 3.4684 0.2444 17 1 12.5433 2.4492 0.2336 18 6 13.0804 4.5106 0.3696 19 7 14.3677 4.2634 0.4763 20 14 12.4632 6.2736 0.3875 21 1 12.1728 6.6822 1.7852 22 1 13.5022 7.1676 -0.1839 23 1 11.2240 6.3725 -0.4248 24 6 5.6177 2.6448 -0.0013 25 6 4.2367 2.6411 -0.0012 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8935 3.1914 1.2495 32 1 0.4399 2.1638 1.2492 33 1 1.8933 1.6500 2.1392 34 1 1.8932 1.6501 -2.1393 35 1 0.4399 2.1638 -1.2492 36 1 1.8935 3.1914 -1.2494 37 1 3.6950 -0.6901 -0.0125 38 1 6.1561 -0.6957 -0.0037 39 1 8.1957 0.6027 -0.0039 40 1 8.1791 3.2834 -0.8931 41 1 8.1804 3.2829 0.8869 42 1 10.0870 2.3856 -2.1533 43 1 11.4084 1.5401 -1.3119 44 1 9.7926 0.7995 -1.4011 45 1 10.5311 4.3615 -0.7638 46 1 10.3691 4.2868 1.0072 47 1 14.9966 4.9966 0.5640 48 1 6.1558 3.5812 -0.0014 49 1 3.6948 3.5753 -0.0009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560804538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -24.310406 kcal Electronic energy + Delta-G solvation = -22626.589602 eV Core-core repulsion = 19551.357130 eV Total energy + Delta-G solvation = -3075.232471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86779 -38.92813 -37.40683 -35.20264 -33.89768 -32.12178 -31.00995 -29.92906 -28.82143 -28.05813 -27.02903 -25.31082 -24.52498 -22.73925 -22.41046 -20.83921 -19.55880 -18.98991 -18.26565 -16.84910 -16.62951 -16.15974 -16.02996 -15.51395 -15.43614 -15.08050 -14.81992 -14.56970 -14.43511 -14.18750 -14.13416 -14.00943 -13.74152 -13.53793 -13.21306 -12.89070 -12.78356 -12.68027 -12.55433 -12.50337 -12.21675 -11.99602 -11.96674 -11.83078 -11.61498 -11.43949 -11.40470 -11.28540 -11.13234 -11.04782 -10.75101 -10.64892 -9.72993 -8.27577 -8.14850 -6.30262 0.63052 0.79882 1.35969 1.37535 1.48917 2.36584 2.59981 3.04838 3.07832 3.84111 3.87889 3.98847 4.13132 4.16677 4.19206 4.21647 4.31687 4.48220 4.59372 4.59797 4.65754 4.70492 4.73540 4.80019 4.83350 4.88311 4.90914 4.97312 5.05083 5.07710 5.11384 5.18929 5.21385 5.23934 5.24877 5.27933 5.32324 5.33814 5.45999 5.52615 5.56729 5.59869 5.62964 5.68093 5.73678 5.94640 6.08363 6.30222 6.51620 6.77166 6.91987 7.33334 8.88867 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.033985 B = 0.002585 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.701309 B =10828.834792 C =11349.421732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.014 4.014 4 C -0.138 4.138 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.077 4.077 8 C -0.207 4.207 9 C 0.201 3.799 10 N -0.743 5.743 11 C 0.141 3.859 12 C -0.080 4.080 13 H 0.058 0.942 14 C -0.127 4.127 15 C -0.005 4.005 16 C -0.519 4.519 17 H 0.037 0.963 18 C 0.001 3.999 19 N -0.952 5.952 20 Si 0.947 3.053 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.245 1.245 24 C -0.214 4.214 25 C -0.072 4.072 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.402 0.598 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.018 0.982 47 H 0.264 0.736 48 H 0.115 0.885 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.312 -6.653 -1.824 31.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.014 4.014 4 C -0.195 4.195 5 C -0.195 4.195 6 C -0.141 4.141 7 C -0.096 4.096 8 C -0.230 4.230 9 C 0.098 3.902 10 N -0.373 5.373 11 C 0.016 3.984 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.184 4.184 15 C -0.043 4.043 16 C -0.557 4.557 17 H 0.055 0.945 18 C -0.196 4.196 19 N -0.594 5.594 20 Si 0.770 3.230 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.169 1.169 24 C -0.237 4.237 25 C -0.090 4.090 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.237 0.763 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.133 0.867 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -30.056 -6.377 -1.813 30.779 hybrid contribution 1.172 0.487 0.136 1.277 sum -28.884 -5.890 -1.677 29.526 Atomic orbital electron populations 1.21899 0.95031 1.01904 1.02326 1.21634 0.96518 0.95139 1.01820 1.19369 0.89623 0.96332 0.96101 1.21929 1.01391 0.99823 0.96393 1.21931 1.01388 0.99823 0.96381 1.19750 0.95554 0.92672 1.06107 1.21089 0.92890 0.98492 0.97083 1.20775 0.94989 0.96131 1.11065 1.18082 0.83641 0.94485 0.94026 1.44762 1.02436 1.08183 1.81891 1.21272 0.90577 0.86020 1.00488 1.21064 0.92618 0.97828 0.98391 0.92329 1.21639 1.00617 0.99650 0.96503 1.19523 0.93700 0.94547 0.96561 1.21409 0.91821 0.93563 1.48904 0.94513 1.26000 0.94850 1.04172 0.94531 1.70070 1.03086 1.33665 1.52539 0.85709 0.78954 0.78982 0.79323 1.19375 1.21276 1.16857 1.20780 0.95039 0.96472 1.11399 1.20843 0.92786 0.98272 0.97113 0.92494 0.92152 0.92128 0.91910 0.91962 0.92945 0.91071 0.93320 0.93275 0.91081 0.92939 0.84375 0.85551 0.76288 0.92469 0.92852 0.93224 0.94300 0.91958 0.95992 0.96353 0.92672 0.86693 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.21 71.98 0.66 -0.92 16 2 C -0.11 -1.47 3.65 30.59 0.11 -1.36 16 3 C -0.01 -0.21 0.63 -52.92 -0.03 -0.25 16 4 C -0.14 -1.95 7.93 71.98 0.57 -1.38 16 5 C -0.14 -1.93 7.93 71.98 0.57 -1.36 16 6 C -0.14 -2.79 4.76 -19.84 -0.09 -2.88 16 7 C -0.08 -1.58 8.97 22.25 0.20 -1.38 16 8 C -0.21 -4.79 9.90 22.40 0.22 -4.57 16 9 C 0.20 5.31 6.65 38.22 0.25 5.57 16 10 N -0.74 -20.17 5.46 -339.40 -1.85 -22.03 16 11 C 0.14 4.31 4.30 86.38 0.37 4.68 16 12 C -0.08 -2.95 2.37 -10.79 -0.03 -2.98 16 13 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.13 -4.47 8.88 71.98 0.64 -3.83 16 15 C -0.01 -0.25 3.52 29.85 0.10 -0.14 16 16 C -0.52 -29.29 8.96 25.60 0.23 -29.06 16 17 H 0.04 2.28 7.30 -2.91 -0.02 2.26 16 18 C 0.00 0.04 5.47 84.66 0.46 0.51 16 19 N -0.95 -59.75 13.96 21.45 0.30 -59.46 16 20 Si 0.95 44.12 27.47 68.60 1.88 46.00 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 24 C -0.21 -5.54 9.31 22.40 0.21 -5.33 16 25 C -0.07 -1.59 8.70 22.25 0.19 -1.40 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.58 6.43 -2.39 -0.02 0.57 16 28 H 0.06 0.58 6.43 -2.38 -0.02 0.57 16 29 H 0.06 0.83 7.49 -2.39 -0.02 0.81 16 30 H 0.06 0.83 7.52 -2.39 -0.02 0.81 16 31 H 0.05 0.76 7.38 -2.38 -0.02 0.75 16 32 H 0.07 0.80 6.43 -2.39 -0.02 0.78 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 36 H 0.05 0.76 7.38 -2.39 -0.02 0.74 16 37 H 0.14 2.25 5.88 -2.91 -0.02 2.23 16 38 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.40 10.09 7.67 -92.71 -0.71 9.38 16 40 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 41 H 0.05 1.65 7.95 -2.38 -0.02 1.63 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.58 6.95 -2.39 -0.02 1.57 16 44 H 0.06 1.81 7.18 -2.39 -0.02 1.79 16 45 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 46 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 47 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.12 2.99 6.73 -2.91 -0.02 2.97 16 49 H 0.13 2.41 7.09 -2.91 -0.02 2.39 16 Total: -1.00 -63.81 370.82 5.12 -58.68 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.14 Total: 22.88 kcal Atomic # 6 Polarization: -50.73 SS G_CDS: 4.65 Total: -46.08 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.55 Total: -81.48 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -63.81 5.12 -58.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560804538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.373 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds