Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46789 * 2 1 4 4 C 1.53005 * 109.47077 * 60.00333 * 3 2 1 5 5 C 1.53004 * 109.47256 * 300.00138 * 3 2 1 6 6 C 1.50696 * 109.46831 * 180.02562 * 3 2 1 7 7 C 1.38290 * 119.92385 * 180.02562 * 6 3 2 8 8 C 1.38106 * 120.07425 * 180.02562 * 7 6 3 9 9 C 1.38916 * 119.92661 * 359.97438 * 8 7 6 10 10 N 1.39667 * 120.07376 * 179.97438 * 9 8 7 11 11 C 1.46505 * 119.99755 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.47017 * 54.99771 * 12 11 10 14 14 C 1.53001 * 109.47242 * 295.00240 * 12 11 10 15 15 C 1.52994 * 109.47404 * 174.99693 * 12 11 10 16 16 C 1.50701 * 109.47248 * 184.99754 * 15 12 11 17 17 H 1.07997 * 120.00120 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99825 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99974 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00091 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47323 * 89.99961 * 20 18 16 22 22 H 1.48504 * 109.46935 * 209.99740 * 20 18 16 23 23 H 1.48493 * 109.47102 * 329.99583 * 20 18 16 24 24 C 1.38907 * 119.84662 * 0.25973 * 9 8 7 25 25 C 1.38105 * 119.92856 * 359.48592 * 24 9 8 26 26 H 1.09008 * 109.46720 * 299.99693 * 1 2 3 27 27 H 1.08995 * 109.46999 * 59.99517 * 1 2 3 28 28 H 1.09003 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47039 * 240.00512 * 2 1 3 30 30 H 1.08997 * 109.47146 * 119.99962 * 2 1 3 31 31 H 1.09002 * 109.46720 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47029 * 299.99805 * 4 3 2 33 33 H 1.09002 * 109.47067 * 59.99968 * 4 3 2 34 34 H 1.08996 * 109.47029 * 300.00268 * 5 3 2 35 35 H 1.09000 * 109.47102 * 60.00041 * 5 3 2 36 36 H 1.08996 * 109.46745 * 180.02562 * 5 3 2 37 37 H 1.08003 * 119.96494 * 0.04668 * 7 6 3 38 38 H 1.08001 * 120.03613 * 179.97438 * 8 7 6 39 39 H 0.96996 * 120.00638 * 0.02562 * 10 9 8 40 40 H 1.09002 * 109.47068 * 300.00057 * 11 10 9 41 41 H 1.09001 * 109.47372 * 60.00145 * 11 10 9 42 42 H 1.08998 * 109.47430 * 59.99652 * 14 12 11 43 43 H 1.08996 * 109.47271 * 180.02562 * 14 12 11 44 44 H 1.09008 * 109.46731 * 299.99706 * 14 12 11 45 45 H 1.09001 * 109.47698 * 305.00111 * 15 12 11 46 46 H 1.09009 * 109.47010 * 65.00116 * 15 12 11 47 47 H 0.97003 * 120.00629 * 180.02562 * 19 18 16 48 48 H 1.08002 * 120.03753 * 179.72540 * 24 9 8 49 49 H 1.08000 * 119.96348 * 180.25439 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1638 1.2493 5 6 1.5299 2.1639 -1.2492 6 6 3.5470 1.4426 -0.0006 7 6 4.2368 2.6411 -0.0002 8 6 5.6179 2.6448 -0.0013 9 6 6.3141 1.4427 -0.0023 10 7 7.7107 1.4428 -0.0040 11 6 8.4433 0.1740 -0.0056 12 6 9.9475 0.4536 -0.0079 13 1 10.1983 1.0993 0.8338 14 6 10.3355 1.1467 -1.3156 15 6 10.7117 -0.8660 0.1162 16 6 12.1869 -0.5827 0.2374 17 1 12.5436 0.4366 0.2274 18 6 13.0810 -1.6248 0.3622 19 7 14.3683 -1.3776 0.4685 20 14 12.4639 -3.3879 0.3802 21 1 12.4266 -3.9135 -1.0082 22 1 13.3766 -4.2233 1.2014 23 1 11.0982 -3.4283 0.9617 24 6 5.6179 0.2406 -0.0077 25 6 4.2369 0.2441 -0.0012 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8937 3.1913 1.2495 32 1 0.4400 2.1637 1.2494 33 1 1.8934 1.6499 2.1393 34 1 1.8932 1.6500 -2.1392 35 1 0.4399 2.1638 -1.2492 36 1 1.8936 3.1914 -1.2494 37 1 3.6950 3.5754 0.0013 38 1 6.1560 3.5812 -0.0014 39 1 8.1957 2.2827 -0.0041 40 1 8.1810 -0.3981 0.8843 41 1 8.1789 -0.3971 -0.8957 42 1 9.7910 2.0868 -1.4040 43 1 11.4071 1.3455 -1.3174 44 1 10.0846 0.5010 -2.1573 45 1 10.3706 -1.4016 1.0021 46 1 10.5304 -1.4755 -0.7692 47 1 14.9975 -2.1107 0.5558 48 1 6.1561 -0.6957 -0.0130 49 1 3.6951 -0.6901 -0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560804539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -10.353653 kcal Electronic energy + Delta-G solvation = -22639.401071 eV Core-core repulsion = 19564.773810 eV Total energy + Delta-G solvation = -3074.627261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99830 -37.90877 -36.19030 -33.73590 -32.08317 -31.20400 -30.34155 -28.46717 -27.43764 -27.31590 -26.01010 -24.33759 -22.65379 -22.38636 -21.01497 -19.29988 -18.86786 -17.25362 -16.89544 -16.01550 -15.35677 -14.92672 -14.73325 -14.62490 -14.17737 -14.04523 -13.68165 -13.46925 -13.33148 -13.27663 -12.98382 -12.81832 -12.33435 -12.20047 -12.15147 -11.98030 -11.86461 -11.72826 -11.36764 -11.20036 -11.10952 -10.94182 -10.79953 -10.60443 -10.56152 -10.32911 -10.03007 -9.80303 -9.67474 -9.57140 -9.15077 -8.79391 -8.56811 -7.12937 -6.07038 -4.05022 1.56857 1.73984 3.28536 3.36450 3.39283 3.71384 3.98162 4.42483 4.52568 4.58328 4.78369 5.04450 5.10439 5.15532 5.17273 5.25569 5.26077 5.36780 5.41123 5.50070 5.52812 5.56744 5.63096 5.70974 5.73972 5.77952 5.78896 5.81830 5.85506 5.93316 5.97755 6.09344 6.14181 6.17531 6.21570 6.27889 6.31518 6.49052 6.58831 6.67100 6.81036 6.82653 6.97599 7.02855 7.18316 7.34863 7.56540 7.75815 7.96349 8.50193 8.97222 9.55167 11.06144 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.002655 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.437107 B =10543.731701 C =11197.609890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.014 4.014 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.066 4.066 8 C -0.202 4.202 9 C 0.222 3.778 10 N -0.741 5.741 11 C 0.124 3.876 12 C -0.087 4.087 13 H 0.068 0.932 14 C -0.134 4.134 15 C -0.006 4.006 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.199 4.199 25 C -0.071 4.071 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.398 0.602 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.017 0.983 46 H 0.014 0.986 47 H 0.263 0.737 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.028 6.344 -1.514 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.015 4.015 4 C -0.196 4.196 5 C -0.196 4.196 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.225 4.225 9 C 0.116 3.884 10 N -0.369 5.369 11 C 0.001 3.999 12 C -0.106 4.106 13 H 0.086 0.914 14 C -0.191 4.191 15 C -0.044 4.044 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.222 4.222 25 C -0.090 4.090 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.233 0.767 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.734 6.051 -1.494 27.451 hybrid contribution 0.204 -0.692 0.016 0.722 sum -26.531 5.359 -1.478 27.107 Atomic orbital electron populations 1.21917 0.96105 1.01383 1.01948 1.21658 0.95570 0.95987 1.02064 1.19320 0.91213 0.95410 0.95508 1.21940 1.00461 1.00121 0.97101 1.21938 1.00461 1.00118 0.97097 1.19412 0.94117 0.93051 1.07836 1.20587 0.93096 0.97167 0.97650 1.20534 0.94312 0.96114 1.11505 1.17923 0.83973 0.93772 0.92705 1.44957 1.02177 1.08860 1.80915 1.21620 0.92767 0.85148 1.00403 1.21237 0.90927 1.00131 0.98294 0.91393 1.21731 1.02302 0.98192 0.96864 1.19568 0.96345 0.92133 0.96370 1.21082 0.89079 0.95151 1.50098 0.90838 1.25026 0.94768 0.99093 0.94643 1.69907 1.01518 1.32165 1.50627 0.86801 0.79150 0.85137 0.78334 1.20315 1.21415 1.19014 1.20676 0.94280 0.96609 1.10651 1.20860 0.93253 0.97508 0.97383 0.92504 0.92501 0.93052 0.91751 0.91743 0.92744 0.92522 0.92656 0.92666 0.92524 0.92745 0.86829 0.86672 0.76724 0.92685 0.92717 0.94840 0.91251 0.93544 0.96481 0.96816 0.92736 0.86264 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.21 37.16 0.34 -0.71 16 2 C -0.12 -0.93 3.65 -26.72 -0.10 -1.03 16 3 C -0.01 -0.13 0.63 -155.65 -0.10 -0.22 16 4 C -0.14 -1.12 7.93 37.16 0.29 -0.82 16 5 C -0.14 -1.11 7.93 37.16 0.29 -0.82 16 6 C -0.14 -1.56 4.76 -104.59 -0.50 -2.06 16 7 C -0.07 -0.74 8.70 -39.61 -0.34 -1.09 16 8 C -0.20 -2.50 9.90 -39.38 -0.39 -2.89 16 9 C 0.22 3.06 6.65 -83.79 -0.56 2.51 16 10 N -0.74 -10.51 5.46 -58.63 -0.32 -10.83 16 11 C 0.12 1.98 4.30 -4.04 -0.02 1.96 16 12 C -0.09 -1.62 2.37 -90.62 -0.22 -1.84 16 13 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 14 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 15 C -0.01 -0.14 3.52 -27.89 -0.10 -0.24 16 16 C -0.52 -14.23 8.96 -34.44 -0.31 -14.54 16 17 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 20 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 24 C -0.20 -2.70 9.31 -39.38 -0.37 -3.06 16 25 C -0.07 -0.85 8.97 -39.61 -0.36 -1.21 16 26 H 0.06 0.36 6.43 -51.92 -0.33 0.03 16 27 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 30 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 31 H 0.05 0.43 7.38 -51.93 -0.38 0.05 16 32 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 36 H 0.05 0.43 7.38 -51.93 -0.38 0.04 16 37 H 0.11 1.07 7.09 -52.48 -0.37 0.70 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.40 5.25 7.67 -40.82 -0.31 4.94 16 40 H 0.05 0.89 7.96 -51.93 -0.41 0.47 16 41 H 0.05 0.87 7.94 -51.93 -0.41 0.46 16 42 H 0.03 0.50 7.18 -51.93 -0.37 0.13 16 43 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 44 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 46 H 0.01 0.31 7.57 -51.92 -0.39 -0.08 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.12 1.61 6.73 -52.49 -0.35 1.25 16 49 H 0.12 1.23 5.88 -52.49 -0.31 0.92 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -29.34 370.83 -9.45 -38.80 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.64 Total: 2.73 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -2.18 Total: -26.31 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.45 Total: -37.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.34 -9.45 -38.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560804539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.442 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds