Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46789 * 2 1 4 4 C 1.53005 * 109.47077 * 60.00333 * 3 2 1 5 5 C 1.53004 * 109.47256 * 300.00138 * 3 2 1 6 6 C 1.50696 * 109.46831 * 180.02562 * 3 2 1 7 7 C 1.38290 * 119.92385 * 180.02562 * 6 3 2 8 8 C 1.38106 * 120.07425 * 180.02562 * 7 6 3 9 9 C 1.38916 * 119.92661 * 359.97438 * 8 7 6 10 10 N 1.39667 * 120.07376 * 179.97438 * 9 8 7 11 11 C 1.46505 * 119.99755 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.47017 * 54.99771 * 12 11 10 14 14 C 1.53001 * 109.47242 * 295.00240 * 12 11 10 15 15 C 1.52994 * 109.47404 * 174.99693 * 12 11 10 16 16 C 1.50701 * 109.47248 * 184.99754 * 15 12 11 17 17 H 1.07997 * 120.00120 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99825 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99974 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00091 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47323 * 89.99961 * 20 18 16 22 22 H 1.48504 * 109.46935 * 209.99740 * 20 18 16 23 23 H 1.48493 * 109.47102 * 329.99583 * 20 18 16 24 24 C 1.38907 * 119.84662 * 0.25973 * 9 8 7 25 25 C 1.38105 * 119.92856 * 359.48592 * 24 9 8 26 26 H 1.09008 * 109.46720 * 299.99693 * 1 2 3 27 27 H 1.08995 * 109.46999 * 59.99517 * 1 2 3 28 28 H 1.09003 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47039 * 240.00512 * 2 1 3 30 30 H 1.08997 * 109.47146 * 119.99962 * 2 1 3 31 31 H 1.09002 * 109.46720 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47029 * 299.99805 * 4 3 2 33 33 H 1.09002 * 109.47067 * 59.99968 * 4 3 2 34 34 H 1.08996 * 109.47029 * 300.00268 * 5 3 2 35 35 H 1.09000 * 109.47102 * 60.00041 * 5 3 2 36 36 H 1.08996 * 109.46745 * 180.02562 * 5 3 2 37 37 H 1.08003 * 119.96494 * 0.04668 * 7 6 3 38 38 H 1.08001 * 120.03613 * 179.97438 * 8 7 6 39 39 H 0.96996 * 120.00638 * 0.02562 * 10 9 8 40 40 H 1.09002 * 109.47068 * 300.00057 * 11 10 9 41 41 H 1.09001 * 109.47372 * 60.00145 * 11 10 9 42 42 H 1.08998 * 109.47430 * 59.99652 * 14 12 11 43 43 H 1.08996 * 109.47271 * 180.02562 * 14 12 11 44 44 H 1.09008 * 109.46731 * 299.99706 * 14 12 11 45 45 H 1.09001 * 109.47698 * 305.00111 * 15 12 11 46 46 H 1.09009 * 109.47010 * 65.00116 * 15 12 11 47 47 H 0.97003 * 120.00629 * 180.02562 * 19 18 16 48 48 H 1.08002 * 120.03753 * 179.72540 * 24 9 8 49 49 H 1.08000 * 119.96348 * 180.25439 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1638 1.2493 5 6 1.5299 2.1639 -1.2492 6 6 3.5470 1.4426 -0.0006 7 6 4.2368 2.6411 -0.0002 8 6 5.6179 2.6448 -0.0013 9 6 6.3141 1.4427 -0.0023 10 7 7.7107 1.4428 -0.0040 11 6 8.4433 0.1740 -0.0056 12 6 9.9475 0.4536 -0.0079 13 1 10.1983 1.0993 0.8338 14 6 10.3355 1.1467 -1.3156 15 6 10.7117 -0.8660 0.1162 16 6 12.1869 -0.5827 0.2374 17 1 12.5436 0.4366 0.2274 18 6 13.0810 -1.6248 0.3622 19 7 14.3683 -1.3776 0.4685 20 14 12.4639 -3.3879 0.3802 21 1 12.4266 -3.9135 -1.0082 22 1 13.3766 -4.2233 1.2014 23 1 11.0982 -3.4283 0.9617 24 6 5.6179 0.2406 -0.0077 25 6 4.2369 0.2441 -0.0012 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8937 3.1913 1.2495 32 1 0.4400 2.1637 1.2494 33 1 1.8934 1.6499 2.1393 34 1 1.8932 1.6500 -2.1392 35 1 0.4399 2.1638 -1.2492 36 1 1.8936 3.1914 -1.2494 37 1 3.6950 3.5754 0.0013 38 1 6.1560 3.5812 -0.0014 39 1 8.1957 2.2827 -0.0041 40 1 8.1810 -0.3981 0.8843 41 1 8.1789 -0.3971 -0.8957 42 1 9.7910 2.0868 -1.4040 43 1 11.4071 1.3455 -1.3174 44 1 10.0846 0.5010 -2.1573 45 1 10.3706 -1.4016 1.0021 46 1 10.5304 -1.4755 -0.7692 47 1 14.9975 -2.1107 0.5558 48 1 6.1561 -0.6957 -0.0130 49 1 3.6951 -0.6901 -0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560804539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = -24.322856 kcal Electronic energy + Delta-G solvation = -22640.006821 eV Core-core repulsion = 19564.773810 eV Total energy + Delta-G solvation = -3075.233011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86808 -38.92724 -37.40928 -35.20608 -33.89726 -32.05085 -31.18888 -29.81233 -28.73496 -28.04856 -27.23108 -25.28592 -24.15619 -23.37068 -22.06194 -20.81607 -19.60682 -18.98648 -18.23227 -16.98381 -16.59669 -16.04223 -16.00453 -15.52207 -15.48117 -15.11532 -14.83835 -14.59214 -14.37571 -14.22210 -14.15973 -13.96766 -13.75277 -13.47060 -13.20971 -12.87323 -12.78742 -12.68709 -12.57957 -12.51129 -12.27802 -11.99578 -11.96680 -11.74536 -11.66013 -11.45476 -11.38415 -11.28297 -11.13588 -11.04751 -10.75368 -10.65232 -9.72739 -8.27508 -8.14889 -6.30266 0.63071 0.79922 1.35951 1.37682 1.48996 2.36638 2.59958 3.04889 3.07928 3.83903 3.88452 3.98434 4.13193 4.16068 4.18927 4.21637 4.31819 4.48600 4.59510 4.59573 4.64189 4.71206 4.73818 4.80246 4.83521 4.87823 4.92026 4.96010 5.04503 5.07528 5.11925 5.18748 5.21349 5.23478 5.24855 5.28917 5.33322 5.33641 5.45588 5.50369 5.58451 5.60273 5.62562 5.68012 5.73287 5.94733 6.08345 6.30220 6.51571 6.77143 6.92096 7.33423 8.88949 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.002655 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.437107 B =10543.731701 C =11197.609890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.014 4.014 4 C -0.138 4.138 5 C -0.137 4.137 6 C -0.139 4.139 7 C -0.070 4.070 8 C -0.206 4.206 9 C 0.201 3.799 10 N -0.743 5.743 11 C 0.141 3.859 12 C -0.080 4.080 13 H 0.058 0.942 14 C -0.127 4.127 15 C -0.005 4.005 16 C -0.519 4.519 17 H 0.037 0.963 18 C 0.002 3.998 19 N -0.953 5.953 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.246 1.246 24 C -0.215 4.215 25 C -0.079 4.079 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.402 0.598 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.265 0.735 48 H 0.115 0.885 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.331 6.110 -1.764 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.014 4.014 4 C -0.195 4.195 5 C -0.194 4.194 6 C -0.141 4.141 7 C -0.088 4.088 8 C -0.229 4.229 9 C 0.098 3.902 10 N -0.373 5.373 11 C 0.016 3.984 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.184 4.184 15 C -0.043 4.043 16 C -0.557 4.557 17 H 0.055 0.945 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.169 1.169 24 C -0.238 4.238 25 C -0.098 4.098 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.237 0.763 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.038 0.962 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.133 0.867 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -30.076 5.837 -1.747 30.686 hybrid contribution 1.182 -0.511 0.097 1.291 sum -28.893 5.326 -1.650 29.426 Atomic orbital electron populations 1.21896 0.94917 1.01855 1.02417 1.21646 0.96614 0.95435 1.01603 1.19368 0.89617 0.96117 0.96317 1.21928 1.01392 0.99937 0.96207 1.21924 1.01385 0.99935 0.96193 1.19753 0.95562 0.92674 1.06098 1.20864 0.92831 0.98170 0.96957 1.20753 0.94944 0.96137 1.11038 1.18078 0.83641 0.94485 0.94031 1.44755 1.02436 1.08179 1.81890 1.21271 0.90586 0.86024 1.00476 1.21062 0.92607 0.97821 0.98392 0.92341 1.21642 1.00616 0.99664 0.96500 1.19522 0.93722 0.94529 0.96546 1.21410 0.91799 0.93567 1.48941 0.94513 1.25989 0.94826 1.04153 0.94511 1.70064 1.03076 1.33681 1.52561 0.85713 0.79372 0.79056 0.78851 1.19297 1.21300 1.16916 1.20802 0.95093 0.96465 1.11440 1.21072 0.92840 0.98599 0.97241 0.92022 0.91984 0.92674 0.92205 0.92254 0.92528 0.91087 0.93492 0.93443 0.91096 0.92525 0.84848 0.85516 0.76286 0.92928 0.92427 0.91953 0.94303 0.93199 0.96231 0.96139 0.92662 0.86736 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.21 71.98 0.66 -1.02 16 2 C -0.12 -1.62 3.65 30.60 0.11 -1.51 16 3 C -0.01 -0.21 0.63 -52.92 -0.03 -0.25 16 4 C -0.14 -1.86 7.93 71.98 0.57 -1.29 16 5 C -0.14 -1.84 7.93 71.98 0.57 -1.27 16 6 C -0.14 -2.79 4.76 -19.84 -0.09 -2.88 16 7 C -0.07 -1.42 8.70 22.25 0.19 -1.22 16 8 C -0.21 -4.75 9.90 22.40 0.22 -4.53 16 9 C 0.20 5.32 6.65 38.22 0.25 5.57 16 10 N -0.74 -20.19 5.46 -339.41 -1.85 -22.04 16 11 C 0.14 4.32 4.30 86.38 0.37 4.69 16 12 C -0.08 -2.95 2.37 -10.80 -0.03 -2.97 16 13 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 14 C -0.13 -4.47 8.88 71.98 0.64 -3.83 16 15 C -0.01 -0.24 3.52 29.85 0.10 -0.14 16 16 C -0.52 -29.30 8.96 25.60 0.23 -29.07 16 17 H 0.04 2.28 7.30 -2.91 -0.02 2.26 16 18 C 0.00 0.09 5.47 84.66 0.46 0.55 16 19 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 20 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 24 C -0.22 -5.60 9.31 22.40 0.21 -5.39 16 25 C -0.08 -1.77 8.97 22.25 0.20 -1.57 16 26 H 0.06 0.62 6.43 -2.38 -0.02 0.60 16 27 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.89 7.51 -2.39 -0.02 0.87 16 30 H 0.06 0.89 7.51 -2.39 -0.02 0.87 16 31 H 0.06 0.74 7.38 -2.39 -0.02 0.72 16 32 H 0.07 0.76 6.43 -2.39 -0.02 0.75 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.75 6.43 -2.39 -0.02 0.74 16 36 H 0.06 0.73 7.38 -2.39 -0.02 0.72 16 37 H 0.13 2.14 7.09 -2.91 -0.02 2.12 16 38 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.40 10.09 7.67 -92.71 -0.71 9.38 16 40 H 0.05 1.64 7.96 -2.39 -0.02 1.62 16 41 H 0.06 1.74 7.94 -2.39 -0.02 1.72 16 42 H 0.06 1.81 7.18 -2.39 -0.02 1.79 16 43 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 44 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 46 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 47 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.11 3.00 6.73 -2.91 -0.02 2.98 16 49 H 0.13 2.53 5.88 -2.91 -0.02 2.51 16 Total: -1.00 -63.85 370.83 5.12 -58.73 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.14 Total: 22.92 kcal Atomic # 6 Polarization: -50.78 SS G_CDS: 4.65 Total: -46.14 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.55 Total: -81.51 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -63.85 5.12 -58.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560804539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.407 kcal (2) G-P(sol) polarization free energy of solvation -63.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds