Wall clock time and date at job start Tue Mar 31 2020 06:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.37773 * 120.00331 * 275.00131 * 13 3 2 15 15 N 1.30258 * 124.71815 * 359.70190 * 14 13 3 16 16 C 1.30905 * 117.28132 * 179.76335 * 15 14 13 17 17 Cl 1.73595 * 123.02687 * 180.24394 * 16 15 14 18 18 C 1.37037 * 113.94656 * 0.51632 * 16 15 14 19 19 C 1.41541 * 126.11858 * 179.72882 * 18 16 15 20 20 O 1.21702 * 119.99778 * 359.97434 * 19 18 16 21 21 O 1.34973 * 120.00044 * 179.97438 * 19 18 16 22 22 S 1.70913 * 124.71816 * 179.97438 * 14 13 3 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 30 30 H 0.96698 * 113.99783 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4080 2.6769 1.3696 15 7 -0.4912 2.7012 0.4276 16 6 -1.6291 3.2885 0.6992 17 17 -2.9319 3.4013 -0.4425 18 6 -1.6970 3.8115 1.9640 19 6 -2.7987 4.5022 2.5232 20 8 -3.8061 4.6769 1.8630 21 8 -2.7320 4.9671 3.7886 22 16 -0.1679 3.4699 2.7698 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 2.2719 2.1231 1.9979 30 1 -3.5319 5.4243 4.0823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595029805.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:18 Heat of formation + Delta-G solvation = -67.474367 kcal Electronic energy + Delta-G solvation = -18594.263076 eV Core-core repulsion = 15348.720607 eV Total energy + Delta-G solvation = -3245.542469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48965 -40.62490 -38.31077 -37.44322 -36.89313 -34.77198 -32.94816 -31.30791 -29.10982 -26.30374 -25.06025 -24.04966 -22.14780 -20.73276 -20.19989 -19.13305 -18.34801 -17.75476 -17.11168 -17.00684 -16.81647 -16.17599 -16.01244 -15.52723 -14.66438 -14.55217 -14.23460 -13.66847 -13.21119 -13.16395 -13.10194 -12.84082 -12.68888 -12.50589 -12.20920 -12.14051 -12.09053 -11.64466 -11.52712 -11.27633 -10.96317 -10.73017 -10.49433 -10.34433 -8.72846 -8.18729 -6.35998 -0.82472 -0.14659 0.09748 1.02949 1.28086 1.44585 1.47779 1.57388 1.94515 2.24108 2.37590 2.52005 3.12449 3.58303 4.12948 4.51103 4.55662 4.69016 4.73954 5.02431 5.21095 5.38087 5.50995 5.55289 5.57777 5.74532 5.85298 6.13708 6.22484 6.65377 6.91010 6.98054 7.35267 8.86092 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.004635 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.778237 B = 6040.081881 C = 6591.211586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.284 3.716 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.074 0.926 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.634 5.634 14 C 0.342 3.658 15 N -0.576 5.576 16 C 0.268 3.732 17 Cl 0.016 6.984 18 C -0.387 4.387 19 C 0.572 3.428 20 O -0.534 6.534 21 O -0.500 6.500 22 S 0.245 5.755 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.266 0.734 29 H 0.424 0.576 30 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 5.628 11.574 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.038 0.962 5 C -0.589 4.589 6 H 0.092 0.908 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.266 5.266 14 C -0.027 4.027 15 N -0.305 5.305 16 C 0.095 3.905 17 Cl 0.045 6.955 18 C -0.514 4.514 19 C 0.418 3.582 20 O -0.427 6.427 21 O -0.312 6.312 22 S 0.495 5.505 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.264 0.736 30 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -6.198 5.225 11.384 13.976 hybrid contribution -0.232 0.103 -1.047 1.078 sum -6.429 5.329 10.337 13.289 Atomic orbital electron populations 1.21671 0.96726 0.99193 1.00449 1.21814 0.93909 0.98683 1.01639 1.18721 0.93946 0.89430 0.79983 0.96201 1.21532 0.91072 1.39407 1.06919 0.90808 1.25633 1.02832 0.94275 0.95019 1.70019 1.36907 1.37982 1.09799 0.85385 0.79578 0.77731 0.78175 1.18501 1.20665 1.21231 1.45002 1.09308 1.53476 1.18814 1.23920 0.91064 0.93566 0.94169 1.65825 1.02174 1.28989 1.33481 1.20813 0.89297 0.91953 0.88467 1.98413 1.42069 1.95774 1.59273 1.22802 1.03316 1.25800 0.99510 1.17413 0.84767 0.75733 0.80316 1.90979 1.32394 1.57266 1.62093 1.84992 1.47769 1.69992 1.28496 1.83556 1.04238 1.51931 1.10760 0.94200 0.93967 0.94398 0.93997 0.90597 0.92497 0.73629 0.70911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 8.53 71.98 0.61 -4.35 16 2 C -0.12 -5.37 5.45 30.59 0.17 -5.20 16 3 C 0.28 12.84 2.28 44.24 0.10 12.94 16 4 H 0.02 1.07 7.74 -2.39 -0.02 1.06 16 5 C -0.55 -26.44 8.73 25.60 0.22 -26.22 16 6 H 0.07 3.31 7.74 -2.91 -0.02 3.29 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -48.57 11.29 21.45 0.24 -48.33 16 9 Si 0.97 39.60 29.54 68.60 2.03 41.63 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16 13 N -0.63 -22.56 5.13 -334.36 -1.72 -24.27 16 14 C 0.34 11.58 6.50 179.44 1.17 12.75 16 15 N -0.58 -21.93 7.41 -191.33 -1.42 -23.35 16 16 C 0.27 9.39 7.41 84.55 0.63 10.01 16 17 Cl 0.02 0.55 27.26 -2.72 -0.07 0.47 16 18 C -0.39 -11.81 6.32 22.80 0.14 -11.66 16 19 C 0.57 15.78 8.08 68.63 0.55 16.33 16 20 O -0.53 -17.03 15.73 19.17 0.30 -16.72 16 21 O -0.50 -9.62 13.35 -58.91 -0.79 -10.41 16 22 S 0.25 6.32 22.98 -56.49 -1.30 5.02 16 23 H 0.04 1.52 5.60 -2.39 -0.01 1.51 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.65 7.85 -2.38 -0.02 1.63 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 3.85 5.95 -2.39 -0.01 3.84 16 28 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 29 H 0.42 12.53 8.66 -92.71 -0.80 11.73 16 30 H 0.43 4.01 8.98 -74.06 -0.67 3.34 16 Total: -1.00 -59.68 289.71 1.08 -58.60 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -0.24 Total: 11.14 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.04 Total: 6.23 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -2.89 Total: -95.95 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.48 Total: -27.13 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.30 Total: 5.02 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -0.07 Total: 0.47 kcal Total: -59.68 1.08 -58.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029805.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.874 kcal (2) G-P(sol) polarization free energy of solvation -59.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds