Wall clock time and date at job start Tue Mar 31 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48504 * 109.46943 * 269.99972 * 3 2 1 5 5 H 1.48498 * 109.47315 * 30.00134 * 3 2 1 6 6 H 1.48507 * 109.47012 * 150.00413 * 3 2 1 7 7 C 1.38807 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99959 * 157.69422 * 7 2 1 9 9 N 1.36935 * 120.00242 * 337.69029 * 7 2 1 10 10 C 1.46502 * 120.00061 * 326.21074 * 9 7 2 11 11 C 1.52997 * 109.46751 * 265.78185 * 10 9 7 12 12 C 1.50703 * 109.47040 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99807 * 359.97438 * 12 11 10 14 14 O 1.34224 * 119.99955 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99977 * 146.20501 * 9 7 2 16 16 C 1.50701 * 109.46883 * 270.00264 * 15 9 7 17 17 C 1.33564 * 122.74274 * 94.74045 * 16 15 9 18 18 S 1.76190 * 107.95831 * 179.91159 * 17 16 15 19 19 C 1.70969 * 90.29619 * 0.28701 * 18 17 16 20 20 Cl 1.73605 * 124.92288 * 179.82917 * 19 18 17 21 21 N 1.29137 * 110.15972 * 359.83274 * 19 18 17 22 22 H 0.97001 * 120.00152 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46804 * 25.77454 * 10 9 7 24 24 H 1.08999 * 109.47299 * 145.77606 * 10 9 7 25 25 H 1.09005 * 109.47221 * 299.99312 * 11 10 9 26 26 H 1.08999 * 109.47691 * 59.99661 * 11 10 9 27 27 H 0.96701 * 116.99949 * 179.97438 * 14 12 11 28 28 H 1.08996 * 109.46959 * 30.00634 * 15 9 7 29 29 H 1.09003 * 109.46725 * 150.00415 * 15 9 7 30 30 H 1.08002 * 126.01936 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 3.0296 -1.2370 -0.3556 9 7 1.4023 -2.3438 0.4491 10 6 0.4302 -2.2741 1.5429 11 6 1.1381 -2.5434 2.8722 12 6 0.1383 -2.4711 3.9975 13 8 -1.0214 -2.2285 3.7605 14 8 0.5360 -2.6761 5.2629 15 6 1.7242 -3.6351 -0.1637 16 6 0.7875 -3.8915 -1.3161 17 6 1.0964 -3.5874 -2.5795 18 16 -0.2647 -4.0505 -3.5980 19 6 -1.1186 -4.5998 -2.2224 20 17 -2.7125 -5.2870 -2.2511 21 7 -0.4061 -4.4294 -1.1589 22 1 -0.4850 0.8400 0.0004 23 1 -0.0204 -1.2819 1.5657 24 1 -0.3467 -3.0225 1.3868 25 1 1.5888 -3.5357 2.8494 26 1 1.9151 -1.7950 3.0284 27 1 -0.1413 -2.6191 5.9507 28 1 2.7516 -3.6187 -0.5272 29 1 1.6135 -4.4266 0.5775 30 1 2.0188 -3.1386 -2.9174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:58 Heat of formation + Delta-G solvation = -31.459850 kcal Electronic energy + Delta-G solvation = -18664.378241 eV Core-core repulsion = 15420.397478 eV Total energy + Delta-G solvation = -3243.980762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.69109 -39.26485 -36.64764 -36.01998 -35.43709 -31.81466 -31.14815 -29.19012 -26.30952 -24.71530 -24.14072 -21.70052 -20.08853 -19.21898 -17.83953 -17.60972 -16.59975 -15.88545 -15.58248 -15.54357 -14.89755 -14.46551 -13.75975 -13.50459 -13.29427 -13.22157 -12.63333 -12.42880 -11.89499 -11.39329 -11.29344 -11.16698 -11.05311 -11.01845 -10.91334 -10.67396 -10.25020 -10.16196 -9.97864 -9.79411 -9.29071 -8.95044 -8.63309 -8.20927 -6.86416 -5.94857 -3.50083 1.08183 1.24435 2.10290 2.35936 2.77253 3.26202 3.28674 3.36651 3.39503 3.61899 4.36779 5.07472 5.21333 5.47659 5.73714 5.81909 5.92630 5.95111 6.17493 6.37821 6.43505 6.59875 6.65275 6.90269 7.04557 7.63151 7.73278 8.15674 8.30009 8.41471 8.98088 9.60490 10.16524 11.04672 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.006467 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.013930 B = 4328.866810 C = 5770.160864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.016 3.984 3 Si 0.898 3.102 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.272 4.272 8 H 0.070 0.930 9 N -0.562 5.562 10 C 0.154 3.846 11 C -0.130 4.130 12 C 0.477 3.523 13 O -0.514 6.514 14 O -0.529 6.529 15 C 0.207 3.793 16 C 0.078 3.922 17 C -0.234 4.234 18 S 0.128 5.872 19 C 0.069 3.931 20 Cl 0.003 6.997 21 N -0.442 5.442 22 H 0.259 0.741 23 H 0.109 0.891 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.398 0.602 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -8.228 -1.475 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.187 4.187 3 Si 0.726 3.274 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.402 4.402 8 H 0.087 0.913 9 N -0.279 5.279 10 C 0.027 3.973 11 C -0.170 4.170 12 C 0.319 3.681 13 O -0.401 6.401 14 O -0.340 6.340 15 C 0.077 3.923 16 C -0.055 4.055 17 C -0.374 4.374 18 S 0.375 5.625 19 C -0.235 4.235 20 Cl 0.031 6.969 21 N -0.159 5.159 22 H 0.069 0.931 23 H 0.127 0.873 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.255 0.745 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.691 -8.216 -2.381 8.582 hybrid contribution 0.034 1.185 1.111 1.625 sum 0.725 -7.031 -1.270 7.182 Atomic orbital electron populations 1.70008 1.05633 1.26271 1.49090 1.25239 0.94996 0.99045 0.99381 0.86394 0.79568 0.83429 0.77976 1.21096 1.21365 1.20004 1.19140 0.94575 0.85237 1.41237 0.91252 1.44060 1.48778 1.02160 1.32947 1.20872 0.89692 1.05006 0.81728 1.22264 0.97968 1.04107 0.92650 1.24143 0.89521 0.71619 0.82818 1.90704 1.20740 1.44356 1.84345 1.84618 1.46593 1.84342 1.18470 1.19908 0.93550 0.89686 0.89176 1.21602 0.91739 0.95949 0.96210 1.26873 1.03488 1.11573 0.95456 1.83634 1.10349 1.57140 1.11350 1.26786 0.95258 1.07395 0.94098 1.98380 1.18063 1.82467 1.98008 1.65801 1.05553 1.14882 1.29672 0.93099 0.87334 0.93944 0.89469 0.88080 0.74484 0.91210 0.92398 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.42 11.32 55.49 0.63 -23.80 16 2 C 0.02 0.41 4.93 -17.43 -0.09 0.33 16 3 Si 0.90 20.38 29.61 -169.99 -5.03 15.35 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.27 -6.75 9.49 -15.06 -0.14 -6.90 16 8 H 0.07 1.66 7.92 -52.48 -0.42 1.24 16 9 N -0.56 -12.93 2.44 -174.61 -0.43 -13.35 16 10 C 0.15 3.58 4.54 -4.04 -0.02 3.56 16 11 C -0.13 -2.45 6.13 -27.88 -0.17 -2.62 16 12 C 0.48 8.80 8.33 36.01 0.30 9.10 16 13 O -0.51 -11.28 16.74 -18.75 -0.31 -11.59 16 14 O -0.53 -7.63 13.42 -39.24 -0.53 -8.15 16 15 C 0.21 4.04 6.12 -5.19 -0.03 4.01 16 16 C 0.08 1.57 6.32 -84.21 -0.53 1.03 16 17 C -0.23 -4.17 11.11 29.10 0.32 -3.85 16 18 S 0.13 2.03 23.22 -107.50 -2.50 -0.46 16 19 C 0.07 1.26 8.03 51.63 0.41 1.67 16 20 Cl 0.00 0.05 29.33 -51.86 -1.52 -1.47 16 21 N -0.44 -9.16 10.54 -8.99 -0.09 -9.26 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.11 2.95 5.27 -51.93 -0.27 2.68 16 24 H 0.04 1.05 8.06 -51.93 -0.42 0.63 16 25 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 27 H 0.40 3.90 9.10 45.56 0.41 4.32 16 28 H 0.07 1.22 8.00 -51.93 -0.42 0.81 16 29 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 30 H 0.18 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -30.79 302.04 -7.11 -37.90 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -1.93 Total: 3.94 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 0.06 Total: 6.34 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.11 Total: -46.40 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.84 Total: -19.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.50 Total: -0.46 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.52 Total: -1.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.79 -7.11 -37.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.440 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds