Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48504 * 109.46943 * 269.99972 * 3 2 1 5 5 H 1.48498 * 109.47315 * 30.00134 * 3 2 1 6 6 H 1.48507 * 109.47012 * 150.00413 * 3 2 1 7 7 C 1.38807 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99959 * 157.69422 * 7 2 1 9 9 N 1.36935 * 120.00242 * 337.69029 * 7 2 1 10 10 C 1.46502 * 120.00061 * 326.21074 * 9 7 2 11 11 C 1.52997 * 109.46751 * 265.78185 * 10 9 7 12 12 C 1.50703 * 109.47040 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99807 * 359.97438 * 12 11 10 14 14 O 1.34224 * 119.99955 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99977 * 146.20501 * 9 7 2 16 16 C 1.50701 * 109.46883 * 270.00264 * 15 9 7 17 17 C 1.33564 * 122.74274 * 94.74045 * 16 15 9 18 18 S 1.76190 * 107.95831 * 179.91159 * 17 16 15 19 19 C 1.70969 * 90.29619 * 0.28701 * 18 17 16 20 20 Cl 1.73605 * 124.92288 * 179.82917 * 19 18 17 21 21 N 1.29137 * 110.15972 * 359.83274 * 19 18 17 22 22 H 0.97001 * 120.00152 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46804 * 25.77454 * 10 9 7 24 24 H 1.08999 * 109.47299 * 145.77606 * 10 9 7 25 25 H 1.09005 * 109.47221 * 299.99312 * 11 10 9 26 26 H 1.08999 * 109.47691 * 59.99661 * 11 10 9 27 27 H 0.96701 * 116.99949 * 179.97438 * 14 12 11 28 28 H 1.08996 * 109.46959 * 30.00634 * 15 9 7 29 29 H 1.09003 * 109.46725 * 150.00415 * 15 9 7 30 30 H 1.08002 * 126.01936 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 3.0296 -1.2370 -0.3556 9 7 1.4023 -2.3438 0.4491 10 6 0.4302 -2.2741 1.5429 11 6 1.1381 -2.5434 2.8722 12 6 0.1383 -2.4711 3.9975 13 8 -1.0214 -2.2285 3.7605 14 8 0.5360 -2.6761 5.2629 15 6 1.7242 -3.6351 -0.1637 16 6 0.7875 -3.8915 -1.3161 17 6 1.0964 -3.5874 -2.5795 18 16 -0.2647 -4.0505 -3.5980 19 6 -1.1186 -4.5998 -2.2224 20 17 -2.7125 -5.2870 -2.2511 21 7 -0.4061 -4.4294 -1.1589 22 1 -0.4850 0.8400 0.0004 23 1 -0.0204 -1.2819 1.5657 24 1 -0.3467 -3.0225 1.3868 25 1 1.5888 -3.5357 2.8494 26 1 1.9151 -1.7950 3.0284 27 1 -0.1413 -2.6191 5.9507 28 1 2.7516 -3.6187 -0.5272 29 1 1.6135 -4.4266 0.5775 30 1 2.0188 -3.1386 -2.9174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = -52.078041 kcal Electronic energy + Delta-G solvation = -18665.272312 eV Core-core repulsion = 15420.397478 eV Total energy + Delta-G solvation = -3244.874834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15995 -40.71767 -38.00970 -37.58052 -36.93171 -33.65063 -32.70499 -30.76394 -27.92647 -26.43201 -25.62686 -23.32498 -21.64361 -20.69608 -19.36178 -19.02914 -18.28657 -17.38103 -17.10908 -17.00892 -16.62920 -16.00642 -15.43320 -14.99525 -14.93593 -14.62888 -14.11085 -13.99365 -13.50494 -12.93081 -12.78571 -12.73138 -12.63422 -12.48997 -12.39386 -12.35390 -11.98997 -11.87901 -11.60606 -11.50983 -10.72918 -10.52172 -10.31842 -9.61167 -8.70773 -7.84535 -5.43227 -0.31478 -0.10678 0.70375 1.00140 1.30569 1.47762 1.52592 1.60346 1.83385 2.25741 2.54347 3.28129 3.68030 3.82825 4.23039 4.38618 4.42894 4.50184 4.70386 4.86785 4.96293 5.03141 5.18550 5.26154 5.64490 5.69338 5.86954 6.41864 6.73508 7.06627 7.12902 7.78859 8.32646 9.13103 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.006467 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.013930 B = 4328.866810 C = 5770.160864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.036 4.036 3 Si 0.955 3.045 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.261 1.261 7 C -0.263 4.263 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.163 3.837 11 C -0.120 4.120 12 C 0.487 3.513 13 O -0.557 6.557 14 O -0.511 6.511 15 C 0.206 3.794 16 C 0.053 3.947 17 C -0.239 4.239 18 S 0.204 5.796 19 C 0.043 3.957 20 Cl 0.018 6.982 21 N -0.478 5.478 22 H 0.248 0.752 23 H 0.069 0.931 24 H 0.015 0.985 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.422 0.578 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -9.012 -1.884 9.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.234 4.234 3 Si 0.783 3.217 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.185 1.185 7 C -0.393 4.393 8 H 0.099 0.901 9 N -0.293 5.293 10 C 0.036 3.964 11 C -0.160 4.160 12 C 0.331 3.669 13 O -0.448 6.448 14 O -0.324 6.324 15 C 0.077 3.923 16 C -0.080 4.080 17 C -0.379 4.379 18 S 0.453 5.547 19 C -0.260 4.260 20 Cl 0.046 6.954 21 N -0.197 5.197 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.034 0.966 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.283 0.717 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.301 -9.039 -2.779 9.733 hybrid contribution -0.477 1.260 1.180 1.792 sum 1.824 -7.779 -1.599 8.148 Atomic orbital electron populations 1.70187 1.07238 1.25904 1.52350 1.25874 0.95341 1.01786 1.00361 0.85492 0.78646 0.79933 0.77648 1.21078 1.23002 1.18546 1.19463 0.94907 0.85814 1.39127 0.90104 1.44131 1.48468 1.02906 1.33833 1.20485 0.89804 1.01786 0.84277 1.21984 0.97481 1.05703 0.90849 1.23914 0.88489 0.70621 0.83919 1.90705 1.22395 1.46461 1.85192 1.84530 1.47145 1.83278 1.17478 1.19996 0.94508 0.88219 0.89554 1.21605 0.91885 0.97382 0.97145 1.27244 1.05047 1.10040 0.95603 1.83326 1.07759 1.54981 1.08667 1.27188 0.96147 1.07641 0.95035 1.98378 1.16867 1.82199 1.97986 1.65790 1.06326 1.16278 1.31267 0.94298 0.91293 0.96618 0.86778 0.87597 0.71692 0.88949 0.91493 0.78588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.88 11.32 21.65 0.25 -52.64 16 2 C -0.04 -1.86 4.93 84.86 0.42 -1.44 16 3 Si 0.95 42.11 29.61 68.60 2.03 44.14 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.26 -12.84 9.49 84.03 0.80 -12.04 16 8 H 0.08 3.70 7.92 -2.91 -0.02 3.68 16 9 N -0.58 -26.20 2.44 -706.33 -1.72 -27.92 16 10 C 0.16 7.75 4.54 86.38 0.39 8.14 16 11 C -0.12 -4.45 6.13 29.85 0.18 -4.27 16 12 C 0.49 17.59 8.33 71.24 0.59 18.18 16 13 O -0.56 -24.80 16.74 21.97 0.37 -24.43 16 14 O -0.51 -13.55 13.42 -51.36 -0.69 -14.23 16 15 C 0.21 7.80 6.12 85.63 0.52 8.32 16 16 C 0.05 2.07 6.32 41.49 0.26 2.33 16 17 C -0.24 -8.06 11.11 66.76 0.74 -7.31 16 18 S 0.20 6.06 23.22 -56.49 -1.31 4.75 16 19 C 0.04 1.52 8.03 130.64 1.05 2.57 16 20 Cl 0.02 0.56 29.33 -2.72 -0.08 0.48 16 21 N -0.48 -19.68 10.54 -182.36 -1.92 -21.60 16 22 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 23 H 0.07 3.90 5.27 -2.39 -0.01 3.89 16 24 H 0.02 0.80 8.06 -2.39 -0.02 0.78 16 25 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 26 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 27 H 0.42 7.20 9.10 -74.06 -0.67 6.52 16 28 H 0.09 3.01 8.00 -2.39 -0.02 2.99 16 29 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 30 H 0.20 5.69 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -67.70 302.04 2.40 -65.29 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.52 Total: 11.68 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 4.96 Total: 14.48 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -3.40 Total: -102.16 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.32 Total: -38.66 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.31 Total: 4.75 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -0.08 Total: 0.48 kcal Total: -67.70 2.40 -65.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.217 kcal (2) G-P(sol) polarization free energy of solvation -67.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds