Wall clock time and date at job start Tue Mar 31 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99687 * 2 1 4 4 H 1.48497 * 109.47281 * 240.00146 * 3 2 1 5 5 H 1.48501 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47186 * 119.99806 * 3 2 1 7 7 C 1.38803 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99878 * 201.82085 * 7 2 1 9 9 N 1.36931 * 120.00212 * 22.10134 * 7 2 1 10 10 C 1.46497 * 120.00194 * 34.26955 * 9 7 2 11 11 C 1.52999 * 109.47299 * 93.45501 * 10 9 7 12 12 C 1.50699 * 109.47220 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99907 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00241 * 214.27360 * 9 7 2 16 16 C 1.50703 * 109.47428 * 89.99398 * 15 9 7 17 17 C 1.33565 * 126.01728 * 90.00225 * 16 15 9 18 18 N 1.31860 * 114.51425 * 180.02562 * 17 16 15 19 19 C 1.29140 * 117.07220 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 124.92282 * 180.02562 * 19 18 17 21 21 S 1.70976 * 110.15492 * 359.72626 * 19 18 17 22 22 H 0.96996 * 120.00445 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47242 * 213.46363 * 10 9 7 24 24 H 1.09008 * 109.47105 * 333.45692 * 10 9 7 25 25 H 1.08994 * 109.47189 * 300.00475 * 11 10 9 26 26 H 1.09001 * 109.47133 * 60.00366 * 11 10 9 27 27 H 0.96698 * 117.00167 * 180.02562 * 14 12 11 28 28 H 1.08997 * 109.47026 * 209.99934 * 15 9 7 29 29 H 1.09001 * 109.46522 * 329.99756 * 15 9 7 30 30 H 1.08000 * 122.74714 * 359.96521 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0323 -1.2353 0.3482 9 7 1.4012 -2.3446 -0.4451 10 6 0.4335 -2.2784 -1.5430 11 6 1.1491 -2.5381 -2.8701 12 6 0.1537 -2.4694 -3.9994 13 8 -1.0087 -2.2361 -3.7668 14 8 0.5585 -2.6674 -5.2639 15 6 1.7172 -3.6333 0.1760 16 6 0.7756 -3.8809 1.3263 17 6 -0.4047 -4.5022 1.2554 18 7 -1.0444 -4.5942 2.4047 19 6 -0.4670 -4.0844 3.4413 20 17 -1.1232 -4.0915 5.0485 21 16 1.0413 -3.4089 3.0028 22 1 -0.4850 0.8400 0.0004 23 1 -0.3387 -3.0329 -1.3927 24 1 -0.0244 -1.2893 -1.5646 25 1 1.9212 -1.7836 -3.0203 26 1 1.6069 -3.5271 -2.8485 27 1 -0.1161 -2.6130 -5.9545 28 1 1.6073 -4.4285 -0.5612 29 1 2.7433 -3.6175 0.5433 30 1 -0.8030 -4.8961 0.3321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:32 Heat of formation + Delta-G solvation = -34.745173 kcal Electronic energy + Delta-G solvation = -18543.803660 eV Core-core repulsion = 15299.680435 eV Total energy + Delta-G solvation = -3244.123224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.78934 -39.03753 -36.60403 -36.25260 -35.62176 -32.12230 -31.39961 -29.18651 -26.06794 -24.96490 -23.80297 -21.68345 -20.09074 -19.61856 -17.77413 -17.69357 -16.87918 -15.99780 -15.68608 -15.32725 -14.89834 -14.39907 -13.83497 -13.76495 -13.49139 -13.28642 -12.60965 -12.53751 -11.82388 -11.63601 -11.38550 -11.16343 -11.11898 -11.05342 -10.93975 -10.61540 -10.38021 -10.22318 -10.10055 -9.96495 -9.22286 -8.76898 -8.66449 -8.18997 -7.00248 -6.07493 -3.61362 1.15952 1.38733 2.30304 2.46580 2.66114 3.22992 3.27783 3.31537 3.34011 3.50207 4.27602 5.07589 5.23855 5.28222 5.59066 5.72653 5.80478 5.80674 6.06699 6.18876 6.35150 6.46596 6.63450 6.75238 6.87000 7.51163 7.57521 8.09883 8.17121 8.30632 8.84352 9.45703 10.00114 10.91752 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.005764 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.134576 B = 4856.581306 C = 6099.942010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.019 3.981 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.273 4.273 8 H 0.072 0.928 9 N -0.560 5.560 10 C 0.152 3.848 11 C -0.130 4.130 12 C 0.477 3.523 13 O -0.515 6.515 14 O -0.528 6.528 15 C 0.202 3.798 16 C -0.179 4.179 17 C 0.013 3.987 18 N -0.459 5.459 19 C 0.029 3.971 20 Cl -0.005 7.005 21 S 0.189 5.811 22 H 0.262 0.738 23 H 0.037 0.963 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.399 0.601 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -6.851 -0.667 7.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.185 4.185 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.403 4.403 8 H 0.090 0.910 9 N -0.277 5.277 10 C 0.026 3.974 11 C -0.170 4.170 12 C 0.319 3.681 13 O -0.402 6.402 14 O -0.339 6.339 15 C 0.073 3.927 16 C -0.305 4.305 17 C -0.138 4.138 18 N -0.176 5.176 19 C -0.272 4.272 20 Cl 0.022 6.978 21 S 0.438 5.562 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.129 0.871 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.257 0.743 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.632 -6.406 0.523 7.383 hybrid contribution -0.908 0.715 -1.019 1.541 sum 2.724 -5.691 -0.496 6.329 Atomic orbital electron populations 1.69974 1.05682 1.26815 1.47934 1.25292 0.95066 0.99262 0.98839 0.86391 0.79274 0.82734 0.78633 1.20462 1.21370 1.20247 1.19154 0.94476 0.84971 1.41730 0.91043 1.44229 1.48844 1.02559 1.32058 1.20890 0.89584 1.05043 0.81909 1.22243 0.98096 1.04307 0.92370 1.24109 0.89436 0.71596 0.82950 1.90710 1.20526 1.44470 1.84528 1.84614 1.46582 1.84393 1.18358 1.19869 0.94468 0.89937 0.88442 1.27812 1.03699 1.01158 0.97859 1.21162 0.92623 1.04986 0.95064 1.65772 1.34454 1.19119 0.98284 1.26679 0.99709 1.08347 0.92504 1.98358 1.86306 1.97370 1.15770 1.83967 1.15409 1.54203 1.02608 0.92740 0.94440 0.87076 0.87852 0.89358 0.74345 0.91484 0.91714 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.30 11.33 55.49 0.63 -22.67 16 2 C 0.02 0.48 4.94 -17.43 -0.09 0.39 16 3 Si 0.90 19.83 29.61 -169.99 -5.03 14.80 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.27 -6.47 9.49 -15.07 -0.14 -6.62 16 8 H 0.07 1.66 7.92 -52.48 -0.42 1.24 16 9 N -0.56 -11.95 2.43 -174.61 -0.42 -12.37 16 10 C 0.15 3.23 4.55 -4.04 -0.02 3.21 16 11 C -0.13 -2.22 6.14 -27.88 -0.17 -2.39 16 12 C 0.48 8.04 8.33 36.01 0.30 8.34 16 13 O -0.51 -10.47 16.74 -18.75 -0.31 -10.78 16 14 O -0.53 -6.96 13.42 -39.27 -0.53 -7.49 16 15 C 0.20 3.60 6.21 -5.19 -0.03 3.57 16 16 C -0.18 -3.37 6.18 -35.94 -0.22 -3.59 16 17 C 0.01 0.24 11.25 -19.18 -0.22 0.02 16 18 N -0.46 -9.21 10.56 -12.81 -0.14 -9.34 16 19 C 0.03 0.55 8.03 51.63 0.41 0.97 16 20 Cl -0.01 -0.08 29.33 -51.86 -1.52 -1.61 16 21 S 0.19 3.41 23.22 -107.50 -2.50 0.92 16 22 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 24 H 0.11 2.81 5.29 -51.92 -0.27 2.54 16 25 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.40 3.47 9.10 45.56 0.41 3.89 16 28 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 30 H 0.17 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -29.41 302.20 -7.38 -36.79 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -1.93 Total: 3.29 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.17 Total: 3.91 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.07 Total: -44.38 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.84 Total: -18.27 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.50 Total: 0.92 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.41 -7.38 -36.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.041 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds