Wall clock time and date at job start Tue Mar 31 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99687 * 2 1 4 4 H 1.48497 * 109.47281 * 240.00146 * 3 2 1 5 5 H 1.48501 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47186 * 119.99806 * 3 2 1 7 7 C 1.38803 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99878 * 201.82085 * 7 2 1 9 9 N 1.36931 * 120.00212 * 22.10134 * 7 2 1 10 10 C 1.46497 * 120.00194 * 34.26955 * 9 7 2 11 11 C 1.52999 * 109.47299 * 93.45501 * 10 9 7 12 12 C 1.50699 * 109.47220 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99907 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00241 * 214.27360 * 9 7 2 16 16 C 1.50703 * 109.47428 * 89.99398 * 15 9 7 17 17 C 1.33565 * 126.01728 * 90.00225 * 16 15 9 18 18 N 1.31860 * 114.51425 * 180.02562 * 17 16 15 19 19 C 1.29140 * 117.07220 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 124.92282 * 180.02562 * 19 18 17 21 21 S 1.70976 * 110.15492 * 359.72626 * 19 18 17 22 22 H 0.96996 * 120.00445 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47242 * 213.46363 * 10 9 7 24 24 H 1.09008 * 109.47105 * 333.45692 * 10 9 7 25 25 H 1.08994 * 109.47189 * 300.00475 * 11 10 9 26 26 H 1.09001 * 109.47133 * 60.00366 * 11 10 9 27 27 H 0.96698 * 117.00167 * 180.02562 * 14 12 11 28 28 H 1.08997 * 109.47026 * 209.99934 * 15 9 7 29 29 H 1.09001 * 109.46522 * 329.99756 * 15 9 7 30 30 H 1.08000 * 122.74714 * 359.96521 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0323 -1.2353 0.3482 9 7 1.4012 -2.3446 -0.4451 10 6 0.4335 -2.2784 -1.5430 11 6 1.1491 -2.5381 -2.8701 12 6 0.1537 -2.4694 -3.9994 13 8 -1.0087 -2.2361 -3.7668 14 8 0.5585 -2.6674 -5.2639 15 6 1.7172 -3.6333 0.1760 16 6 0.7756 -3.8809 1.3263 17 6 -0.4047 -4.5022 1.2554 18 7 -1.0444 -4.5942 2.4047 19 6 -0.4670 -4.0844 3.4413 20 17 -1.1232 -4.0915 5.0485 21 16 1.0413 -3.4089 3.0028 22 1 -0.4850 0.8400 0.0004 23 1 -0.3387 -3.0329 -1.3927 24 1 -0.0244 -1.2893 -1.5646 25 1 1.9212 -1.7836 -3.0203 26 1 1.6069 -3.5271 -2.8485 27 1 -0.1161 -2.6130 -5.9545 28 1 1.6073 -4.4285 -0.5612 29 1 2.7433 -3.6175 0.5433 30 1 -0.8030 -4.8961 0.3321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:32 Heat of formation + Delta-G solvation = -53.563137 kcal Electronic energy + Delta-G solvation = -18544.619668 eV Core-core repulsion = 15299.680435 eV Total energy + Delta-G solvation = -3244.939233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11786 -40.52644 -38.05794 -37.71110 -36.93979 -33.84906 -32.87868 -30.75680 -27.61550 -26.59047 -25.30465 -23.18203 -21.54423 -21.09951 -19.19049 -19.12363 -18.47469 -17.35757 -17.18301 -16.77601 -16.52102 -15.94046 -15.40595 -15.24559 -15.05766 -14.75402 -14.00416 -13.92557 -13.41597 -13.11488 -12.82456 -12.71591 -12.62068 -12.45805 -12.43281 -12.27354 -12.06658 -11.77520 -11.61927 -11.48619 -10.72076 -10.54848 -10.15501 -9.65478 -8.74218 -7.88772 -5.46275 -0.30863 -0.05372 0.82964 1.02717 1.34017 1.49489 1.52996 1.57661 1.82611 2.26523 2.52577 3.25536 3.74854 3.78406 4.18240 4.32015 4.40001 4.42790 4.74637 4.81888 4.94032 5.03466 5.18154 5.25421 5.66400 5.68914 5.86552 6.39490 6.61435 7.05519 7.13709 7.74603 8.25245 9.07644 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.005764 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.134576 B = 4856.581306 C = 6099.942010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.028 4.028 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.157 3.843 11 C -0.120 4.120 12 C 0.486 3.514 13 O -0.557 6.557 14 O -0.513 6.513 15 C 0.202 3.798 16 C -0.191 4.191 17 C 0.008 3.992 18 N -0.483 5.483 19 C 0.023 3.977 20 Cl 0.017 6.983 21 S 0.209 5.791 22 H 0.250 0.750 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.422 0.578 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -8.075 -1.006 9.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.227 4.227 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.396 4.396 8 H 0.095 0.905 9 N -0.290 5.290 10 C 0.031 3.969 11 C -0.160 4.160 12 C 0.330 3.670 13 O -0.448 6.448 14 O -0.326 6.326 15 C 0.074 3.926 16 C -0.316 4.316 17 C -0.142 4.142 18 N -0.201 5.201 19 C -0.279 4.279 20 Cl 0.045 6.955 21 S 0.458 5.542 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.139 0.861 27 H 0.283 0.717 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.104 -7.652 0.159 9.200 hybrid contribution -1.348 0.919 -0.856 1.843 sum 3.756 -6.733 -0.697 7.741 Atomic orbital electron populations 1.70138 1.07033 1.26218 1.51422 1.25832 0.95339 1.01650 0.99907 0.85623 0.77954 0.79780 0.78868 1.19790 1.23092 1.19673 1.19375 0.94653 0.85801 1.39746 0.90502 1.44254 1.48685 1.03056 1.33029 1.20594 0.89879 1.02365 0.84094 1.21976 0.97422 1.06047 0.90527 1.23938 0.88476 0.70569 0.83973 1.90712 1.22194 1.46540 1.85325 1.84534 1.47142 1.83401 1.17539 1.20033 0.94689 0.89096 0.88825 1.27914 1.03619 1.01339 0.98769 1.21473 0.92626 1.04712 0.95418 1.65845 1.35223 1.20172 0.98872 1.27015 0.99863 1.07657 0.93333 1.98364 1.86010 1.97229 1.13913 1.83854 1.14811 1.53282 1.02265 0.94069 0.95467 0.91235 0.87918 0.86101 0.71697 0.88386 0.90261 0.79978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.23 11.33 21.65 0.25 -49.98 16 2 C -0.03 -1.41 4.94 84.86 0.42 -0.99 16 3 Si 0.95 41.03 29.61 68.60 2.03 43.06 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.27 -12.34 9.49 84.03 0.80 -11.54 16 8 H 0.08 3.44 7.92 -2.91 -0.02 3.41 16 9 N -0.57 -23.71 2.43 -706.35 -1.72 -25.43 16 10 C 0.16 6.62 4.55 86.38 0.39 7.01 16 11 C -0.12 -3.88 6.14 29.85 0.18 -3.70 16 12 C 0.49 15.68 8.33 71.24 0.59 16.27 16 13 O -0.56 -22.56 16.74 21.97 0.37 -22.20 16 14 O -0.51 -12.11 13.42 -51.45 -0.69 -12.80 16 15 C 0.20 6.70 6.21 85.63 0.53 7.24 16 16 C -0.19 -6.84 6.18 24.63 0.15 -6.69 16 17 C 0.01 0.30 11.25 83.63 0.94 1.24 16 18 N -0.48 -18.83 10.56 -194.44 -2.05 -20.88 16 19 C 0.02 0.83 8.03 130.64 1.05 1.88 16 20 Cl 0.02 0.53 29.33 -2.72 -0.08 0.45 16 21 S 0.21 7.21 23.22 -56.49 -1.31 5.90 16 22 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 23 H 0.03 1.16 8.06 -2.39 -0.02 1.14 16 24 H 0.07 3.61 5.29 -2.38 -0.01 3.60 16 25 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 26 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.42 6.15 9.10 -74.06 -0.67 5.47 16 28 H 0.10 2.64 8.07 -2.39 -0.02 2.62 16 29 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 30 H 0.18 6.03 8.06 -2.91 -0.02 6.01 16 Total: -1.00 -63.63 302.20 2.37 -61.26 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.52 Total: 9.90 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.06 Total: 10.72 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.53 Total: -96.30 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.32 Total: -35.00 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: 7.21 SS G_CDS: -1.31 Total: 5.90 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -0.08 Total: 0.45 kcal Total: -63.63 2.37 -61.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.695 kcal (2) G-P(sol) polarization free energy of solvation -63.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds