Wall clock time and date at job start Tue Mar 31 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 120.00191 * 2 1 4 4 H 1.48498 * 109.47395 * 240.00413 * 3 2 1 5 5 H 1.48507 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47067 * 120.00461 * 3 2 1 7 7 C 1.38812 * 119.99251 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99582 * 160.17027 * 7 2 1 9 9 N 1.36931 * 120.00309 * 340.16836 * 7 2 1 10 10 C 1.46501 * 119.99920 * 145.76685 * 9 7 2 11 11 C 1.52998 * 109.47430 * 89.99737 * 10 9 7 12 12 C 1.50701 * 109.46927 * 179.97438 * 11 10 9 13 13 O 1.20829 * 120.00057 * 0.02562 * 12 11 10 14 14 O 1.34228 * 119.99508 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99794 * 325.76093 * 9 7 2 16 16 C 1.50699 * 109.47463 * 275.36662 * 15 9 7 17 17 N 1.29054 * 124.90720 * 90.00222 * 16 15 9 18 18 C 1.31819 * 117.12115 * 180.02562 * 17 16 15 19 19 Cl 1.73595 * 122.76003 * 179.97438 * 18 17 16 20 20 C 1.33716 * 114.47687 * 359.97438 * 18 17 16 21 21 S 1.70973 * 124.91272 * 269.70180 * 16 15 9 22 22 H 0.97008 * 119.99587 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46784 * 209.99872 * 10 9 7 24 24 H 1.08995 * 109.46891 * 329.99185 * 10 9 7 25 25 H 1.08998 * 109.47206 * 299.99967 * 11 10 9 26 26 H 1.08999 * 109.47227 * 60.00215 * 11 10 9 27 27 H 0.96707 * 116.99606 * 179.97438 * 14 12 11 28 28 H 1.08999 * 109.47345 * 35.37134 * 15 9 7 29 29 H 1.09004 * 109.46607 * 155.37351 * 15 9 7 30 30 H 1.07997 * 126.04015 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0422 -1.2299 -0.3179 9 7 1.3863 -2.3531 0.4012 10 6 1.7243 -3.6294 -0.2335 11 6 2.8743 -4.2898 0.5295 12 6 3.2215 -5.6031 -0.1231 13 8 2.6120 -5.9726 -1.0987 14 8 4.2086 -6.3616 0.3789 15 6 0.3810 -2.3079 1.4659 16 6 1.0659 -2.3730 2.8067 17 7 1.4675 -1.3488 3.4813 18 6 2.0504 -1.5834 4.6401 19 17 2.6462 -0.3159 5.6657 20 6 2.1450 -2.8782 4.9606 21 16 1.4167 -3.8140 3.6574 22 1 -0.4850 0.8401 0.0004 23 1 0.8536 -4.2851 -0.2173 24 1 2.0270 -3.4530 -1.2656 25 1 3.7450 -3.6342 0.5133 26 1 2.5716 -4.4663 1.5617 27 1 4.3946 -7.1958 -0.0736 28 1 -0.1852 -1.3795 1.3918 29 1 -0.2961 -3.1558 1.3623 30 1 2.5858 -3.2793 5.8612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:01 Heat of formation + Delta-G solvation = -32.750625 kcal Electronic energy + Delta-G solvation = -18806.820813 eV Core-core repulsion = 15562.784079 eV Total energy + Delta-G solvation = -3244.036734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96356 -39.19092 -36.52738 -36.11985 -35.70100 -32.26157 -30.94067 -29.38700 -26.99668 -24.99422 -23.58161 -21.72273 -20.20609 -19.36781 -18.02084 -17.86539 -16.86235 -16.22795 -15.75118 -15.44957 -14.84543 -14.51667 -13.86008 -13.77953 -13.41734 -13.22191 -12.78218 -12.50877 -11.76889 -11.72273 -11.37439 -11.33370 -11.21372 -10.93155 -10.79794 -10.67821 -10.39908 -10.27861 -10.24581 -10.09217 -9.08503 -8.98809 -8.71656 -8.25790 -6.96342 -5.97724 -3.56646 1.07480 1.47921 1.98022 2.47578 2.70834 3.16932 3.32172 3.37268 3.41704 3.48321 4.39918 4.93990 5.23310 5.27890 5.46316 5.51462 5.55418 5.64685 5.87770 6.07626 6.24726 6.39766 6.46669 6.64408 6.81798 7.36247 7.64802 8.11387 8.16641 8.30649 8.90529 9.55549 10.03154 11.02754 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.008145 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.361542 B = 3436.660170 C = 5192.910307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.029 3.971 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.268 4.268 8 H 0.066 0.934 9 N -0.558 5.558 10 C 0.156 3.844 11 C -0.145 4.145 12 C 0.482 3.518 13 O -0.520 6.520 14 O -0.523 6.523 15 C 0.188 3.812 16 C 0.107 3.893 17 N -0.464 5.464 18 C 0.133 3.867 19 Cl -0.029 7.029 20 C -0.278 4.278 21 S 0.082 5.918 22 H 0.262 0.738 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.401 0.599 28 H 0.144 0.856 29 H 0.059 0.941 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 -8.805 7.296 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.276 5.276 10 C 0.029 3.971 11 C -0.185 4.185 12 C 0.324 3.676 13 O -0.408 6.408 14 O -0.335 6.335 15 C 0.057 3.943 16 C -0.175 4.175 17 N -0.179 5.179 18 C -0.027 4.027 19 Cl -0.001 7.001 20 C -0.419 4.419 21 S 0.336 5.664 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.259 0.741 28 H 0.161 0.839 29 H 0.077 0.923 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.130 -8.770 6.850 11.560 hybrid contribution 1.327 1.076 0.730 1.858 sum 4.457 -7.694 7.581 11.685 Atomic orbital electron populations 1.69717 1.05744 1.26602 1.49811 1.25044 0.95030 0.98846 0.98326 0.86330 0.79334 0.82604 0.78339 1.20747 1.21359 1.20317 1.18971 0.94091 0.85121 1.41540 0.91603 1.43826 1.46460 1.02969 1.34326 1.20828 0.93527 0.87045 0.95713 1.22476 1.04095 0.89669 1.02297 1.23975 0.75658 0.86196 0.81748 1.90688 1.51059 1.72568 1.26509 1.84622 1.53209 1.35897 1.59752 1.20340 0.90685 1.05813 0.77415 1.29602 0.99590 0.87730 1.00599 1.65761 1.13933 1.33526 1.04673 1.20542 1.01786 0.87732 0.92629 1.98355 1.85896 1.52207 1.63635 1.26361 1.14334 0.94980 1.06213 1.83913 1.54496 1.16280 1.11756 0.92812 0.93015 0.91213 0.87886 0.88461 0.74114 0.83941 0.92324 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.53 11.08 55.49 0.61 -22.91 16 2 C 0.03 0.77 5.07 -17.43 -0.09 0.68 16 3 Si 0.91 21.46 29.60 -169.99 -5.03 16.43 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.27 -6.78 9.47 -15.06 -0.14 -6.92 16 8 H 0.07 1.67 7.90 -52.48 -0.41 1.25 16 9 N -0.56 -12.52 2.45 -174.61 -0.43 -12.95 16 10 C 0.16 3.01 5.00 -4.04 -0.02 2.99 16 11 C -0.14 -2.39 6.14 -27.88 -0.17 -2.56 16 12 C 0.48 7.37 8.33 36.01 0.30 7.67 16 13 O -0.52 -9.24 16.74 -18.75 -0.31 -9.55 16 14 O -0.52 -6.36 13.42 -39.25 -0.53 -6.89 16 15 C 0.19 4.03 5.95 -5.20 -0.03 4.00 16 16 C 0.11 2.12 6.91 -13.45 -0.09 2.03 16 17 N -0.46 -9.98 10.55 -8.98 -0.09 -10.08 16 18 C 0.13 2.45 7.30 -19.14 -0.14 2.31 16 19 Cl -0.03 -0.48 29.22 -51.86 -1.52 -1.99 16 20 C -0.28 -4.32 11.23 29.15 0.33 -4.00 16 21 S 0.08 1.28 20.96 -107.50 -2.25 -0.97 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.05 0.95 7.82 -51.92 -0.41 0.55 16 24 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16 25 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 26 H 0.10 1.56 5.68 -51.93 -0.30 1.26 16 27 H 0.40 2.98 9.10 45.56 0.41 3.39 16 28 H 0.14 3.55 5.19 -51.93 -0.27 3.28 16 29 H 0.06 1.11 7.83 -51.93 -0.41 0.70 16 30 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -29.28 296.76 -6.91 -36.19 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -1.77 Total: 2.05 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.06 Total: 6.20 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.09 Total: -45.94 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.84 Total: -16.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.25 Total: -0.97 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -1.99 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.28 -6.91 -36.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.439 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds