Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99916 * 2 1 4 4 H 1.48503 * 109.47114 * 269.99608 * 3 2 1 5 5 H 1.48499 * 109.47508 * 29.99492 * 3 2 1 6 6 H 1.48506 * 109.47184 * 149.99750 * 3 2 1 7 7 C 1.38980 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 177.49459 * 7 2 1 9 9 N 1.36947 * 119.99553 * 357.22369 * 7 2 1 10 10 C 1.46496 * 120.00547 * 337.95780 * 9 7 2 11 11 C 1.50700 * 109.47517 * 97.66921 * 10 9 7 12 12 O 1.20833 * 119.99525 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00631 * 180.02562 * 11 10 9 14 14 C 1.34784 * 119.99892 * 157.95332 * 9 7 2 15 15 O 1.21672 * 119.99788 * 356.57318 * 14 9 7 16 16 C 1.47145 * 120.00063 * 176.56709 * 14 9 7 17 17 C 1.35248 * 123.14863 * 188.35121 * 16 14 9 18 18 S 1.70935 * 108.85593 * 179.87238 * 17 16 14 19 19 C 1.70770 * 91.15281 * 0.32646 * 18 17 16 20 20 Cl 1.73605 * 124.71584 * 179.84430 * 19 18 17 21 21 N 1.28771 * 110.56996 * 359.80733 * 19 18 17 22 22 H 0.97008 * 119.99881 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47667 * 217.67662 * 10 9 7 24 24 H 1.09000 * 109.47142 * 337.67796 * 10 9 7 25 25 H 0.96698 * 117.00432 * 180.02562 * 13 11 10 26 26 H 1.07993 * 125.57162 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0091 -1.2036 0.0005 8 1 3.0882 -1.2040 -0.0403 9 7 1.3255 -2.3888 0.0585 10 6 -0.0379 -2.4228 0.5933 11 6 -1.0250 -2.3892 -0.5449 12 8 -0.6300 -2.3422 -1.6859 13 8 -2.3430 -2.4115 -0.2914 14 6 1.9072 -3.5242 -0.3765 15 8 3.0151 -3.4866 -0.8781 16 6 1.2024 -4.8092 -0.2448 17 6 1.7841 -6.0019 -0.5059 18 16 0.6430 -7.2448 -0.2323 19 6 -0.5481 -6.1021 0.2056 20 17 -2.1717 -6.4973 0.6765 21 7 -0.0744 -4.9065 0.1386 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1794 -3.3367 1.1701 24 1 -0.1971 -1.5582 1.2377 25 1 -2.9372 -2.3887 -1.0539 26 1 2.8035 -6.1456 -0.8322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183791.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -55.435397 kcal Electronic energy + Delta-G solvation = -19257.221313 eV Core-core repulsion = 15876.367798 eV Total energy + Delta-G solvation = -3380.853514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.996 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.20435 -38.79045 -37.66306 -36.78760 -35.19555 -34.45577 -31.79480 -30.10986 -27.72010 -26.12316 -24.45548 -21.94247 -20.82137 -19.38430 -18.35518 -17.08930 -16.76220 -16.21137 -15.65376 -15.53048 -14.84892 -14.62543 -14.28946 -13.97931 -13.68326 -13.21085 -12.82433 -12.08443 -11.90345 -11.65838 -11.55642 -11.44098 -11.26672 -10.98792 -10.53429 -10.43857 -10.27277 -9.63053 -9.59236 -9.34972 -9.03210 -8.82179 -8.62570 -7.95354 -6.48708 -4.03805 0.62603 0.82127 1.65927 1.95952 2.32822 3.14908 3.20715 3.24375 3.72892 3.90904 4.11932 4.39995 4.59459 4.89671 5.09774 5.50698 5.57956 5.99478 6.47078 6.71874 6.85071 7.39989 7.46128 7.67837 7.91017 8.28431 8.95072 9.11468 9.28586 9.72873 10.52436 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.006660 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.366752 B = 4203.100264 C = 5098.877353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.031 3.969 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.293 4.293 8 H 0.110 0.890 9 N -0.401 5.401 10 C 0.136 3.864 11 C 0.516 3.484 12 O -0.527 6.527 13 O -0.529 6.529 14 C 0.512 3.488 15 O -0.574 6.574 16 C 0.058 3.942 17 C -0.241 4.241 18 S 0.235 5.765 19 C 0.044 3.956 20 Cl 0.021 6.979 21 N -0.429 5.429 22 H 0.275 0.725 23 H 0.102 0.898 24 H 0.136 0.864 25 H 0.387 0.613 26 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 -11.860 3.537 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.172 4.172 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.421 4.421 8 H 0.127 0.873 9 N -0.117 5.117 10 C 0.011 3.989 11 C 0.358 3.642 12 O -0.414 6.414 13 O -0.339 6.339 14 C 0.299 3.701 15 O -0.459 6.459 16 C -0.075 4.075 17 C -0.383 4.383 18 S 0.486 5.514 19 C -0.259 4.259 20 Cl 0.049 6.951 21 N -0.149 5.149 22 H 0.085 0.915 23 H 0.119 0.881 24 H 0.153 0.847 25 H 0.242 0.758 26 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.540 -12.273 3.454 13.534 hybrid contribution -0.129 1.797 -0.734 1.946 sum -4.669 -10.476 2.720 11.787 Atomic orbital electron populations 1.69738 1.06198 1.28282 1.47827 1.25449 0.95721 1.00323 0.95697 0.85673 0.79072 0.79759 0.78696 1.20100 1.20629 1.19126 1.19860 0.93034 0.81376 1.47813 0.87280 1.43274 1.11329 1.06583 1.50532 1.21190 0.79880 1.04894 0.92985 1.23447 0.80698 0.68968 0.91083 1.90575 1.79418 1.46973 1.24415 1.84525 1.19439 1.86956 1.42940 1.16733 0.87130 0.81937 0.84293 1.90656 1.20790 1.85587 1.48820 1.20824 0.87854 0.96797 1.02074 1.26546 1.06903 0.95145 1.09721 1.82559 0.99978 1.09321 1.59577 1.27305 0.95459 0.94149 1.09005 1.98412 1.14873 1.91841 1.90015 1.67218 1.11878 1.21120 1.14664 0.91465 0.88107 0.84689 0.75796 0.78999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.20 8.84 55.50 0.49 -22.71 15 2 C 0.03 0.82 5.26 -17.46 -0.09 0.73 15 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.54 15 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 7 C -0.29 -8.12 9.31 -14.99 -0.14 -8.26 15 8 H 0.11 3.07 7.41 -52.49 -0.39 2.68 15 9 N -0.40 -10.69 2.20 -117.42 -0.26 -10.95 15 10 C 0.14 3.28 4.78 -5.20 -0.02 3.25 15 11 C 0.52 12.50 5.26 36.01 0.19 12.69 15 12 O -0.53 -14.72 16.95 -18.76 -0.32 -15.04 15 13 O -0.53 -10.63 13.42 -39.25 -0.53 -11.16 15 14 C 0.51 13.29 7.29 -12.64 -0.09 13.20 15 15 O -0.57 -16.17 16.45 5.21 0.09 -16.09 15 16 C 0.06 1.22 6.45 -84.52 -0.55 0.68 15 17 C -0.24 -4.02 10.62 29.67 0.32 -3.71 15 18 S 0.24 2.94 22.96 -107.50 -2.47 0.47 15 19 C 0.04 0.69 7.98 51.48 0.41 1.10 15 20 Cl 0.02 0.27 29.33 -51.86 -1.52 -1.25 15 21 N -0.43 -8.36 5.83 -9.45 -0.06 -8.42 15 22 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 23 H 0.10 2.22 5.42 -51.93 -0.28 1.94 15 24 H 0.14 3.35 6.02 -51.93 -0.31 3.03 15 25 H 0.39 6.16 9.10 45.56 0.41 6.57 15 26 H 0.19 2.94 8.04 -52.49 -0.42 2.52 15 LS Contribution 268.12 15.07 4.04 4.04 Total: -1.00 -33.49 268.12 -5.66 -39.15 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.12 Total: 6.73 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 0.02 Total: 19.68 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.18 Total: -42.07 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.76 Total: -42.28 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.47 Total: 0.47 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.49 -5.66 -39.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183791.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.290 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds