Wall clock time and date at job start Tue Mar 31 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31351 * 1 3 3 Si 1.86804 * 119.99979 * 2 1 4 4 H 1.48499 * 109.47160 * 269.99482 * 3 2 1 5 5 H 1.48500 * 109.47036 * 29.99689 * 3 2 1 6 6 H 1.48503 * 109.47029 * 149.99783 * 3 2 1 7 7 C 1.39076 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00332 * 177.40167 * 7 2 1 9 9 N 1.36784 * 119.99707 * 357.40172 * 7 2 1 10 10 C 1.46503 * 119.99787 * 46.81186 * 9 7 2 11 11 C 1.50693 * 109.47397 * 95.45336 * 10 9 7 12 12 O 1.20835 * 120.00092 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00292 * 179.97438 * 11 10 9 14 14 C 1.34777 * 119.99830 * 227.07728 * 9 7 2 15 15 O 1.21692 * 119.99639 * 185.51486 * 14 9 7 16 16 C 1.46964 * 120.00028 * 5.51940 * 14 9 7 17 17 N 1.30659 * 125.52690 * 185.97859 * 16 14 9 18 18 C 1.30678 * 115.90510 * 180.02562 * 17 16 14 19 19 C 1.34446 * 115.74827 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 125.46138 * 179.97438 * 19 18 17 21 21 S 1.71078 * 109.08364 * 359.72513 * 19 18 17 22 22 H 0.96998 * 119.99960 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46648 * 215.45464 * 10 9 7 24 24 H 1.08997 * 109.47251 * 335.45166 * 10 9 7 25 25 H 0.96698 * 117.00086 * 179.97438 * 13 11 10 26 26 H 1.08002 * 122.12699 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4449 2.6527 0.7000 6 1 3.5451 1.4402 0.7001 7 6 2.0089 -1.2044 0.0005 8 1 3.0880 -1.2049 -0.0419 9 7 1.3260 -2.3884 0.0548 10 6 0.1724 -2.6093 -0.8208 11 6 0.6149 -3.3465 -2.0584 12 8 1.7751 -3.6553 -2.1953 13 8 -0.2797 -3.6602 -3.0087 14 6 1.7112 -3.3495 0.9175 15 8 1.1687 -4.4386 0.8967 16 6 2.7862 -3.0822 1.8833 17 7 3.3188 -3.9620 2.6893 18 6 4.2655 -3.5185 3.4733 19 6 4.5657 -2.2141 3.3465 20 17 5.7752 -1.3657 4.2580 21 16 3.5695 -1.5258 2.1379 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5758 -3.2010 -0.2934 24 1 -0.2577 -1.6488 -1.1044 25 1 0.0515 -4.1329 -3.7845 26 1 4.7739 -4.1588 4.1789 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622396.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:47 Heat of formation + Delta-G solvation = -78.188529 kcal Electronic energy + Delta-G solvation = -18710.193020 eV Core-core repulsion = 15328.352856 eV Total energy + Delta-G solvation = -3381.840164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.996 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.83068 -39.15229 -38.10281 -36.43107 -35.51452 -35.06881 -32.11392 -29.96843 -28.19570 -25.90925 -24.69515 -22.04228 -20.37036 -19.37700 -18.46086 -17.47533 -17.09201 -16.34238 -15.68640 -15.37020 -14.97761 -14.76919 -14.49869 -14.37549 -13.35459 -13.26010 -13.09786 -12.38296 -11.95192 -11.82045 -11.72740 -11.56341 -11.53826 -11.22932 -10.78223 -10.69427 -10.31182 -9.88746 -9.66693 -9.40865 -8.85987 -8.76993 -8.24180 -8.02315 -6.94385 -4.83088 0.81029 1.50611 2.32308 2.62545 2.83832 2.94721 2.95779 2.98060 3.00557 3.44722 3.74107 4.04501 4.14526 4.61443 5.21838 5.62155 5.74414 6.03527 6.17210 6.44077 6.57710 6.87601 7.10336 7.32116 7.74837 8.08479 8.44441 8.59823 8.87821 9.30817 10.03345 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.007452 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.559472 B = 3756.596863 C = 5033.530475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.340 4.340 8 H 0.104 0.896 9 N -0.420 5.420 10 C 0.125 3.875 11 C 0.461 3.539 12 O -0.514 6.514 13 O -0.526 6.526 14 C 0.561 3.439 15 O -0.554 6.554 16 C 0.030 3.970 17 N -0.421 5.421 18 C 0.032 3.968 19 C -0.279 4.279 20 Cl -0.026 7.026 21 S 0.307 5.693 22 H 0.286 0.714 23 H 0.102 0.898 24 H 0.161 0.839 25 H 0.396 0.604 26 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 3.235 0.984 4.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.475 4.475 8 H 0.121 0.879 9 N -0.141 5.141 10 C 0.000 4.000 11 C 0.302 3.698 12 O -0.401 6.401 13 O -0.337 6.337 14 C 0.347 3.653 15 O -0.436 6.436 16 C -0.244 4.244 17 N -0.138 5.138 18 C -0.128 4.128 19 C -0.427 4.427 20 Cl 0.002 6.998 21 S 0.569 5.431 22 H 0.098 0.902 23 H 0.120 0.880 24 H 0.177 0.823 25 H 0.253 0.747 26 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.628 3.452 0.999 4.452 hybrid contribution 1.320 -0.098 0.234 1.344 sum 3.948 3.354 1.233 5.325 Atomic orbital electron populations 1.69492 1.06444 1.29652 1.41696 1.25753 0.95643 1.00493 0.92901 0.86100 0.80548 0.80029 0.79893 1.19043 1.19461 1.17398 1.19545 0.91863 0.82401 1.53735 0.87891 1.42722 1.27827 1.13987 1.29516 1.21270 0.89984 1.03158 0.85563 1.24949 0.83956 0.76086 0.84819 1.90646 1.20216 1.50928 1.78352 1.84590 1.44897 1.72011 1.32153 1.16973 0.82526 0.85300 0.80500 1.90730 1.56782 1.23886 1.72183 1.27267 1.02606 0.92148 1.02407 1.66866 1.08244 1.33783 1.04894 1.21580 0.97646 0.92206 1.01318 1.28298 1.04558 1.00207 1.09658 1.98302 1.52839 1.76249 1.72453 1.85704 1.23701 1.11843 1.21811 0.90240 0.88006 0.82265 0.74665 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -18.23 10.92 55.50 0.61 -17.62 15 2 C 0.06 1.37 5.34 -17.45 -0.09 1.28 15 3 Si 0.91 16.42 29.55 -169.99 -5.02 11.40 15 4 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 5 H -0.27 -4.81 7.11 56.52 0.40 -4.40 15 6 H -0.25 -4.32 7.11 56.52 0.40 -3.92 15 7 C -0.34 -7.64 6.57 -15.03 -0.10 -7.74 15 8 H 0.10 2.28 5.94 -41.83 -0.25 2.04 15 9 N -0.42 -9.91 2.05 -117.49 -0.24 -10.15 15 10 C 0.13 2.71 5.40 -5.20 -0.03 2.69 15 11 C 0.46 9.64 8.36 36.00 0.30 9.95 15 12 O -0.51 -12.36 17.07 -18.76 -0.32 -12.68 15 13 O -0.53 -8.64 13.42 -39.26 -0.53 -9.17 15 14 C 0.56 14.00 7.43 -12.73 -0.09 13.90 15 15 O -0.55 -15.04 16.80 5.20 0.09 -14.96 15 16 C 0.03 0.68 7.27 -14.52 -0.11 0.57 15 17 N -0.42 -9.33 10.60 -11.53 -0.12 -9.45 15 18 C 0.03 0.60 11.21 -19.38 -0.22 0.38 15 19 C -0.28 -4.92 6.95 29.39 0.20 -4.72 15 20 Cl -0.03 -0.39 29.30 -51.86 -1.52 -1.91 15 21 S 0.31 5.91 18.74 -107.50 -2.01 3.90 15 22 H 0.29 5.76 8.31 -40.82 -0.34 5.42 15 23 H 0.10 2.15 7.67 -51.93 -0.40 1.75 15 24 H 0.16 3.42 5.43 -51.93 -0.28 3.14 15 25 H 0.40 4.61 9.10 45.56 0.41 5.03 15 26 H 0.17 2.55 8.06 -52.49 -0.42 2.12 15 LS Contribution 272.81 15.07 4.11 4.11 Total: -1.00 -28.26 272.81 -5.17 -33.42 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -0.07 Total: 6.80 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -0.13 Total: 16.31 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.24 Total: -37.22 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.76 Total: -36.81 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.02 Total: 11.40 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -2.01 Total: 3.90 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.52 Total: -1.91 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.26 -5.17 -33.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622396.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.768 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds