Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53003 * 109.46700 * 119.99916 * 2 1 3 5 5 N 1.46898 * 109.46933 * 177.49271 * 4 2 1 6 6 C 1.46899 * 111.00254 * 156.64216 * 5 4 2 7 7 C 1.50701 * 109.46971 * 288.15096 * 6 5 4 8 8 H 1.08004 * 119.99901 * 4.95981 * 7 6 5 9 9 C 1.37884 * 120.00026 * 184.94971 * 7 6 5 10 10 N 1.31511 * 119.99812 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47126 * 89.99776 * 11 9 7 13 13 H 1.48498 * 109.46768 * 209.99865 * 11 9 7 14 14 H 1.48493 * 109.47233 * 329.99325 * 11 9 7 15 15 C 1.46902 * 111.00193 * 280.59683 * 5 4 2 16 16 C 1.50699 * 109.47150 * 77.48604 * 15 5 4 17 17 C 1.38261 * 120.00164 * 248.98754 * 16 15 5 18 18 C 1.38211 * 120.00189 * 179.97438 * 17 16 15 19 19 C 1.38260 * 120.00048 * 359.76930 * 18 17 16 20 20 C 1.38217 * 119.99574 * 0.46158 * 19 18 17 21 21 C 1.50703 * 119.99571 * 179.78678 * 20 19 18 22 22 C 1.52997 * 109.46794 * 59.72968 * 21 20 19 23 23 C 1.52997 * 109.47174 * 299.72818 * 21 20 19 24 24 C 1.38212 * 120.00266 * 68.96505 * 16 15 5 25 25 H 1.09000 * 109.47040 * 299.99994 * 1 2 3 26 26 H 1.08999 * 109.46738 * 60.00313 * 1 2 3 27 27 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46933 * 239.99475 * 2 1 3 29 29 H 1.09009 * 109.46831 * 184.89747 * 3 2 1 30 30 H 1.08993 * 109.47215 * 304.89441 * 3 2 1 31 31 H 1.08997 * 109.47065 * 64.89888 * 3 2 1 32 32 H 1.08996 * 109.46935 * 57.49740 * 4 2 1 33 33 H 1.08994 * 109.47647 * 297.49007 * 4 2 1 34 34 H 1.08995 * 109.46856 * 48.15198 * 6 5 4 35 35 H 1.08998 * 109.47219 * 168.15636 * 6 5 4 36 36 H 0.96997 * 119.99994 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47213 * 317.48645 * 15 5 4 38 38 H 1.09000 * 109.47420 * 197.48628 * 15 5 4 39 39 H 1.08004 * 119.99462 * 359.97438 * 17 16 15 40 40 H 1.07996 * 119.99527 * 179.97438 * 18 17 16 41 41 H 1.07998 * 120.00149 * 180.25226 * 19 18 17 42 42 H 1.08999 * 109.47074 * 179.72930 * 21 20 19 43 43 H 1.08993 * 109.47444 * 60.00394 * 22 21 20 44 44 H 1.09004 * 109.47128 * 299.99393 * 22 21 20 45 45 H 1.09008 * 109.46746 * 179.97438 * 22 21 20 46 46 H 1.09004 * 109.47466 * 60.00167 * 23 21 20 47 47 H 1.08999 * 109.47137 * 180.02562 * 23 21 20 48 48 H 1.09002 * 109.47494 * 300.00274 * 23 21 20 49 49 H 1.08008 * 119.99894 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5077 -0.7740 1.2194 6 6 4.0565 -0.9320 2.5729 7 6 3.8849 0.3550 3.3379 8 1 3.3445 1.1785 2.8950 9 6 4.4176 0.4810 4.6034 10 7 4.2674 1.6040 5.2712 11 14 5.3527 -0.9433 5.3692 12 1 6.7923 -0.8341 5.0219 13 1 5.1950 -0.9022 6.8452 14 1 4.8139 -2.2257 4.8494 15 6 3.9780 -1.8461 0.3322 16 6 3.8574 -1.4002 -1.1023 17 6 2.9246 -1.9916 -1.9340 18 6 2.8136 -1.5823 -3.2494 19 6 3.6321 -0.5782 -3.7324 20 6 4.5679 0.0097 -2.9023 21 6 5.4634 1.1009 -3.4300 22 6 4.6076 2.2713 -3.9182 23 6 6.2970 0.5587 -4.5928 24 6 4.6790 -0.3998 -1.5864 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1265 1.4437 -0.0877 30 1 1.6069 1.9810 -0.8428 31 1 1.7501 1.9303 0.9306 32 1 1.6404 -1.7351 1.2720 33 1 1.7138 -0.1822 2.1387 34 1 3.5278 -1.7341 3.0879 35 1 5.1164 -1.1779 2.5087 36 1 4.6425 1.6928 6.1613 37 1 3.3717 -2.7385 0.4875 38 1 5.0207 -2.0719 0.5560 39 1 2.2826 -2.7734 -1.5556 40 1 2.0852 -2.0446 -3.8990 41 1 3.5426 -0.2555 -4.7591 42 1 6.1269 1.4424 -2.6356 43 1 4.0138 2.6576 -3.0899 44 1 3.9441 1.9298 -4.7128 45 1 5.2553 3.0608 -4.2995 46 1 5.6336 0.2172 -5.3874 47 1 6.9450 1.3478 -4.9742 48 1 6.9067 -0.2752 -4.2450 49 1 5.4072 0.0627 -0.9366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615596086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = 5.024271 kcal Electronic energy + Delta-G solvation = -24252.411721 eV Core-core repulsion = 21178.451297 eV Total energy + Delta-G solvation = -3073.960424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74295 -37.46339 -35.21367 -34.03053 -32.50341 -31.04908 -29.80660 -27.69291 -27.15565 -26.54852 -26.03468 -23.79843 -22.90989 -21.68292 -20.46916 -19.43827 -19.09033 -16.80179 -16.38756 -15.69685 -15.15200 -14.76392 -14.48684 -14.22132 -13.79313 -13.67880 -13.50122 -13.43227 -13.35296 -12.73334 -12.53566 -12.44210 -12.30387 -12.03897 -11.93515 -11.77378 -11.66122 -11.39757 -11.19382 -11.07942 -10.98671 -10.81908 -10.61983 -10.48960 -10.42200 -10.23196 -10.03480 -9.84604 -9.79429 -9.26736 -8.55114 -8.49019 -8.16579 -7.34465 -6.03016 -3.99429 1.59115 1.68730 3.28526 3.36416 3.37937 3.97674 4.43187 4.72504 4.82389 4.85372 5.18435 5.20262 5.22506 5.30317 5.34943 5.41503 5.50676 5.54873 5.58224 5.65393 5.72950 5.74747 5.78921 5.82769 5.93152 5.99762 6.02179 6.05808 6.17034 6.18830 6.24898 6.31828 6.32634 6.38370 6.41667 6.51426 6.58121 6.69201 6.69707 6.80610 6.85052 6.97918 6.99668 7.06420 7.15225 7.27453 7.63357 7.95430 8.08492 8.68700 9.08138 9.59112 11.10184 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.004825 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.358583 B = 5801.284537 C = 6279.878702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.127 4.127 4 C 0.069 3.931 5 N -0.516 5.516 6 C 0.163 3.837 7 C -0.503 4.503 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.873 3.127 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.084 3.916 16 C -0.053 4.053 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.078 4.078 21 C -0.057 4.057 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.088 4.088 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.083 0.917 34 H -0.014 1.014 35 H 0.023 0.977 36 H 0.263 0.737 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 -4.802 -18.677 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.184 4.184 4 C -0.059 4.059 5 N -0.239 5.239 6 C 0.037 3.963 7 C -0.541 4.541 8 H 0.100 0.900 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.700 3.300 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.044 4.044 16 C -0.053 4.053 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.142 4.142 20 C -0.078 4.078 21 C -0.076 4.076 22 C -0.200 4.200 23 C -0.199 4.199 24 C -0.107 4.107 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.004 0.996 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.222 -4.266 -18.651 19.172 hybrid contribution 0.142 -1.481 0.963 1.773 sum -1.080 -5.748 -17.688 18.630 Atomic orbital electron populations 1.21806 0.96644 1.00592 1.01133 1.21427 0.93782 0.97732 0.99394 1.21585 1.02178 0.94846 0.99780 1.22139 0.87620 0.97474 0.98704 1.61876 1.07998 1.42563 1.11472 1.20212 0.94142 0.97305 0.84686 1.21034 1.35142 0.98889 0.99082 0.89953 1.24886 0.96053 0.95389 0.96976 1.69891 1.46169 1.25204 1.12717 0.86906 0.80815 0.83618 0.78640 1.20235 1.21305 1.19414 1.21169 1.00630 0.92782 0.89817 1.19866 0.94660 0.95570 0.95227 1.20940 0.98653 1.00606 0.93842 1.20951 0.99661 0.98023 0.95567 1.20804 0.96692 0.97488 0.99233 1.19786 0.96922 0.97183 0.93869 1.20109 0.95834 0.93564 0.98066 1.21838 0.99637 0.97199 1.01297 1.21842 0.99525 1.00835 0.97688 1.20915 0.99475 0.96197 0.94090 0.92932 0.93418 0.93679 0.90045 0.91454 0.95082 0.93197 0.96507 0.89830 0.99608 0.95936 0.92753 0.94898 0.90611 0.86851 0.86830 0.86952 0.90350 0.92201 0.92785 0.92721 0.92729 0.92683 0.92662 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 2 C -0.10 -1.73 2.69 -90.62 -0.24 -1.98 16 3 C -0.13 -2.24 8.99 37.16 0.33 -1.91 16 4 C 0.07 1.31 4.23 -3.82 -0.02 1.29 16 5 N -0.52 -10.39 3.77 -237.52 -0.90 -11.29 16 6 C 0.16 3.85 3.77 -4.98 -0.02 3.84 16 7 C -0.50 -14.01 8.95 -34.44 -0.31 -14.32 16 8 H 0.08 2.51 7.83 -52.48 -0.41 2.10 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 11 Si 0.87 21.38 27.37 -169.99 -4.65 16.72 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.37 6.69 56.52 0.38 -5.99 16 15 C 0.08 1.43 5.19 -4.98 -0.03 1.40 16 16 C -0.05 -0.79 3.62 -104.62 -0.38 -1.17 16 17 C -0.12 -1.63 7.45 -39.58 -0.29 -1.93 16 18 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 19 C -0.12 -1.48 8.71 -39.58 -0.34 -1.83 16 20 C -0.08 -1.00 4.78 -104.62 -0.50 -1.50 16 21 C -0.06 -0.64 3.09 -91.77 -0.28 -0.92 16 22 C -0.14 -1.47 9.00 37.16 0.33 -1.13 16 23 C -0.14 -1.33 9.01 37.16 0.33 -1.00 16 24 C -0.09 -1.32 9.07 -39.59 -0.36 -1.68 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.30 3.62 -51.93 -0.19 1.11 16 29 H 0.07 1.30 7.55 -51.92 -0.39 0.91 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.30 7.63 -51.93 -0.40 -0.09 16 33 H 0.08 1.82 6.95 -51.93 -0.36 1.46 16 34 H -0.01 -0.33 7.46 -51.93 -0.39 -0.72 16 35 H 0.02 0.53 6.82 -51.93 -0.35 0.18 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.03 0.53 7.41 -51.93 -0.38 0.15 16 38 H 0.08 1.27 7.61 -51.93 -0.40 0.88 16 39 H 0.11 1.41 7.97 -52.48 -0.42 0.99 16 40 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.11 1.14 7.10 -52.49 -0.37 0.77 16 42 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16 45 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.05 0.48 7.41 -51.93 -0.38 0.10 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.12 1.97 7.95 -52.48 -0.42 1.55 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -29.24 377.48 -10.05 -39.29 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -9.04 Total: 0.83 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.92 Total: -24.60 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.12 Total: -37.93 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.65 Total: 16.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.24 -10.05 -39.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615596086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.314 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds