Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53003 * 109.46700 * 119.99916 * 2 1 3 5 5 N 1.46898 * 109.46933 * 177.49271 * 4 2 1 6 6 C 1.46899 * 111.00254 * 156.64216 * 5 4 2 7 7 C 1.50701 * 109.46971 * 288.15096 * 6 5 4 8 8 H 1.08004 * 119.99901 * 4.95981 * 7 6 5 9 9 C 1.37884 * 120.00026 * 184.94971 * 7 6 5 10 10 N 1.31511 * 119.99812 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47126 * 89.99776 * 11 9 7 13 13 H 1.48498 * 109.46768 * 209.99865 * 11 9 7 14 14 H 1.48493 * 109.47233 * 329.99325 * 11 9 7 15 15 C 1.46902 * 111.00193 * 280.59683 * 5 4 2 16 16 C 1.50699 * 109.47150 * 77.48604 * 15 5 4 17 17 C 1.38261 * 120.00164 * 248.98754 * 16 15 5 18 18 C 1.38211 * 120.00189 * 179.97438 * 17 16 15 19 19 C 1.38260 * 120.00048 * 359.76930 * 18 17 16 20 20 C 1.38217 * 119.99574 * 0.46158 * 19 18 17 21 21 C 1.50703 * 119.99571 * 179.78678 * 20 19 18 22 22 C 1.52997 * 109.46794 * 59.72968 * 21 20 19 23 23 C 1.52997 * 109.47174 * 299.72818 * 21 20 19 24 24 C 1.38212 * 120.00266 * 68.96505 * 16 15 5 25 25 H 1.09000 * 109.47040 * 299.99994 * 1 2 3 26 26 H 1.08999 * 109.46738 * 60.00313 * 1 2 3 27 27 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46933 * 239.99475 * 2 1 3 29 29 H 1.09009 * 109.46831 * 184.89747 * 3 2 1 30 30 H 1.08993 * 109.47215 * 304.89441 * 3 2 1 31 31 H 1.08997 * 109.47065 * 64.89888 * 3 2 1 32 32 H 1.08996 * 109.46935 * 57.49740 * 4 2 1 33 33 H 1.08994 * 109.47647 * 297.49007 * 4 2 1 34 34 H 1.08995 * 109.46856 * 48.15198 * 6 5 4 35 35 H 1.08998 * 109.47219 * 168.15636 * 6 5 4 36 36 H 0.96997 * 119.99994 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47213 * 317.48645 * 15 5 4 38 38 H 1.09000 * 109.47420 * 197.48628 * 15 5 4 39 39 H 1.08004 * 119.99462 * 359.97438 * 17 16 15 40 40 H 1.07996 * 119.99527 * 179.97438 * 18 17 16 41 41 H 1.07998 * 120.00149 * 180.25226 * 19 18 17 42 42 H 1.08999 * 109.47074 * 179.72930 * 21 20 19 43 43 H 1.08993 * 109.47444 * 60.00394 * 22 21 20 44 44 H 1.09004 * 109.47128 * 299.99393 * 22 21 20 45 45 H 1.09008 * 109.46746 * 179.97438 * 22 21 20 46 46 H 1.09004 * 109.47466 * 60.00167 * 23 21 20 47 47 H 1.08999 * 109.47137 * 180.02562 * 23 21 20 48 48 H 1.09002 * 109.47494 * 300.00274 * 23 21 20 49 49 H 1.08008 * 119.99894 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5077 -0.7740 1.2194 6 6 4.0565 -0.9320 2.5729 7 6 3.8849 0.3550 3.3379 8 1 3.3445 1.1785 2.8950 9 6 4.4176 0.4810 4.6034 10 7 4.2674 1.6040 5.2712 11 14 5.3527 -0.9433 5.3692 12 1 6.7923 -0.8341 5.0219 13 1 5.1950 -0.9022 6.8452 14 1 4.8139 -2.2257 4.8494 15 6 3.9780 -1.8461 0.3322 16 6 3.8574 -1.4002 -1.1023 17 6 2.9246 -1.9916 -1.9340 18 6 2.8136 -1.5823 -3.2494 19 6 3.6321 -0.5782 -3.7324 20 6 4.5679 0.0097 -2.9023 21 6 5.4634 1.1009 -3.4300 22 6 4.6076 2.2713 -3.9182 23 6 6.2970 0.5587 -4.5928 24 6 4.6790 -0.3998 -1.5864 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1265 1.4437 -0.0877 30 1 1.6069 1.9810 -0.8428 31 1 1.7501 1.9303 0.9306 32 1 1.6404 -1.7351 1.2720 33 1 1.7138 -0.1822 2.1387 34 1 3.5278 -1.7341 3.0879 35 1 5.1164 -1.1779 2.5087 36 1 4.6425 1.6928 6.1613 37 1 3.3717 -2.7385 0.4875 38 1 5.0207 -2.0719 0.5560 39 1 2.2826 -2.7734 -1.5556 40 1 2.0852 -2.0446 -3.8990 41 1 3.5426 -0.2555 -4.7591 42 1 6.1269 1.4424 -2.6356 43 1 4.0138 2.6576 -3.0899 44 1 3.9441 1.9298 -4.7128 45 1 5.2553 3.0608 -4.2995 46 1 5.6336 0.2172 -5.3874 47 1 6.9450 1.3478 -4.9742 48 1 6.9067 -0.2752 -4.2450 49 1 5.4072 0.0627 -0.9366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615596086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -9.244744 kcal Electronic energy + Delta-G solvation = -24253.030472 eV Core-core repulsion = 21178.451297 eV Total energy + Delta-G solvation = -3074.579175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85049 -38.85632 -36.20465 -35.58188 -34.48201 -32.35316 -30.83666 -29.52668 -27.94459 -27.86419 -27.41611 -25.42541 -23.88048 -22.97731 -22.07281 -20.81992 -20.19772 -18.87300 -17.43655 -16.98800 -16.58114 -16.20487 -15.94748 -15.59288 -15.17273 -14.95278 -14.69120 -14.52261 -14.47099 -14.33506 -13.93507 -13.79368 -13.45994 -13.36554 -13.08116 -12.95396 -12.83728 -12.77906 -12.68436 -12.48702 -12.41296 -12.04102 -12.00484 -11.85364 -11.71017 -11.53229 -11.45138 -11.36911 -11.34243 -11.16631 -10.76296 -9.53872 -9.24049 -8.96025 -8.26240 -6.28105 0.56177 0.65259 1.33691 1.34670 1.45271 2.34521 2.89218 3.06791 3.38125 3.78034 3.93886 4.05404 4.11482 4.19975 4.27245 4.35583 4.38975 4.41086 4.42557 4.59525 4.63577 4.66237 4.72154 4.76803 4.82169 4.85753 4.86643 4.92719 5.02684 5.03130 5.04239 5.05957 5.14807 5.18402 5.21012 5.26833 5.32465 5.34992 5.40455 5.44801 5.54874 5.61650 5.65527 5.70593 5.83271 5.91693 6.05481 6.26150 6.44529 6.69459 6.78856 7.34666 8.90568 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.004825 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.358583 B = 5801.284537 C = 6279.878702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.118 4.118 4 C 0.073 3.927 5 N -0.527 5.527 6 C 0.172 3.828 7 C -0.506 4.506 8 H 0.038 0.962 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.945 3.055 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.253 1.253 15 C 0.086 3.914 16 C -0.066 4.066 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.079 4.079 21 C -0.060 4.060 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.108 4.108 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.020 0.980 32 H 0.031 0.969 33 H 0.044 0.956 34 H -0.015 1.015 35 H 0.027 0.973 36 H 0.265 0.735 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.048 0.952 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -6.913 -21.556 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.176 4.176 4 C -0.055 4.055 5 N -0.251 5.251 6 C 0.045 3.955 7 C -0.544 4.544 8 H 0.056 0.944 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.768 3.232 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.176 1.176 15 C -0.042 4.042 16 C -0.067 4.067 17 C -0.145 4.145 18 C -0.135 4.135 19 C -0.139 4.139 20 C -0.079 4.079 21 C -0.079 4.079 22 C -0.196 4.196 23 C -0.193 4.193 24 C -0.127 4.127 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.002 0.998 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.686 -6.388 -21.557 22.546 hybrid contribution 0.258 -0.733 1.767 1.931 sum -1.428 -7.121 -19.789 21.080 Atomic orbital electron populations 1.21774 0.94564 1.01876 1.01551 1.21399 0.95415 0.96252 0.98466 1.21486 1.00813 0.96157 0.99108 1.22095 0.87055 0.97925 0.98437 1.61785 1.08707 1.44675 1.09911 1.19960 0.94481 0.94691 0.86336 1.21231 1.34116 0.99449 0.99612 0.94362 1.25802 0.97211 0.98349 0.97537 1.70052 1.47856 1.27783 1.13335 0.85755 0.79519 0.80311 0.77566 1.19170 1.20891 1.17648 1.21187 1.00447 0.92140 0.90418 1.19699 0.96097 0.96608 0.94295 1.21092 0.98214 1.00796 0.94360 1.21302 0.99637 0.97388 0.95190 1.21119 0.95678 0.96910 1.00165 1.19967 0.97381 0.97404 0.93123 1.20148 0.95783 0.93544 0.98390 1.21813 0.99716 0.97151 1.00942 1.21800 0.99527 1.00956 0.97053 1.20842 0.99804 0.97030 0.95033 0.94078 0.91473 0.91963 0.88578 0.93729 0.92865 0.96053 0.95120 0.93754 0.99769 0.95541 0.92594 0.93618 0.91023 0.85540 0.83788 0.84399 0.92004 0.94085 0.91385 0.91439 0.91478 0.91474 0.93304 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.19 71.98 0.66 -3.14 16 2 C -0.10 -3.16 2.69 -10.79 -0.03 -3.18 16 3 C -0.12 -4.32 8.99 71.98 0.65 -3.67 16 4 C 0.07 2.83 4.23 86.30 0.37 3.19 16 5 N -0.53 -21.80 3.77 -905.39 -3.41 -25.21 16 6 C 0.17 8.35 3.77 85.56 0.32 8.67 16 7 C -0.51 -29.59 8.95 25.60 0.23 -29.36 16 8 H 0.04 2.51 7.83 -2.91 -0.02 2.49 16 9 C 0.01 0.46 5.47 84.66 0.46 0.93 16 10 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 11 Si 0.94 44.72 27.37 68.60 1.88 46.60 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.25 -11.19 6.69 99.48 0.67 -10.52 16 15 C 0.09 2.87 5.19 85.56 0.44 3.32 16 16 C -0.07 -1.94 3.62 -19.87 -0.07 -2.02 16 17 C -0.13 -3.02 7.45 22.27 0.17 -2.86 16 18 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 19 C -0.12 -2.48 8.71 22.27 0.19 -2.28 16 20 C -0.08 -1.92 4.78 -19.87 -0.09 -2.02 16 21 C -0.06 -1.27 3.09 -11.54 -0.04 -1.31 16 22 C -0.14 -2.63 9.00 71.98 0.65 -1.98 16 23 C -0.14 -2.26 9.01 71.98 0.65 -1.61 16 24 C -0.11 -3.26 9.07 22.27 0.20 -3.05 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.10 2.90 3.62 -2.39 -0.01 2.89 16 29 H 0.04 1.81 7.55 -2.38 -0.02 1.79 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.03 1.09 7.63 -2.39 -0.02 1.07 16 33 H 0.04 2.04 6.95 -2.39 -0.02 2.03 16 34 H -0.02 -0.74 7.46 -2.39 -0.02 -0.76 16 35 H 0.03 1.26 6.82 -2.39 -0.02 1.24 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.05 1.41 7.41 -2.39 -0.02 1.39 16 38 H 0.07 2.41 7.61 -2.39 -0.02 2.40 16 39 H 0.13 2.69 7.97 -2.91 -0.02 2.66 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.14 2.14 7.10 -2.91 -0.02 2.12 16 42 H 0.06 1.49 7.88 -2.39 -0.02 1.47 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.09 7.37 -2.38 -0.02 1.07 16 45 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.07 0.95 7.41 -2.38 -0.02 0.93 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.10 3.37 7.95 -2.91 -0.02 3.35 16 Total: -1.00 -66.49 377.48 4.58 -61.91 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.83 Total: 19.12 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 4.98 Total: -42.52 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -3.11 Total: -85.11 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -66.49 4.58 -61.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615596086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.661 kcal (2) G-P(sol) polarization free energy of solvation -66.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds