Wall clock time and date at job start Tue Mar 31 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46837 * 2 1 4 4 C 1.52998 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47222 * 304.99759 * 4 3 2 6 6 N 1.46898 * 109.47289 * 65.00301 * 4 3 2 7 7 C 1.46902 * 110.99980 * 227.81387 * 6 4 3 8 8 C 1.50701 * 109.47099 * 176.99194 * 7 6 4 9 9 C 1.38630 * 119.75371 * 90.00091 * 8 7 6 10 10 C 1.37617 * 120.25304 * 180.27833 * 9 8 7 11 11 C 1.40714 * 119.74101 * 359.51288 * 10 9 8 12 12 C 1.41400 * 120.24357 * 180.23148 * 11 10 9 13 13 H 1.08001 * 120.00325 * 205.20437 * 12 11 10 14 14 C 1.39943 * 119.99897 * 25.20672 * 12 11 10 15 15 N 1.30831 * 120.00003 * 17.28758 * 14 12 11 16 16 Si 1.86805 * 120.00033 * 197.28149 * 14 12 11 17 17 H 1.48496 * 109.47000 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46753 * 120.00312 * 16 14 12 19 19 H 1.48498 * 109.46965 * 240.00289 * 16 14 12 20 20 C 1.40718 * 119.51200 * 0.48317 * 11 10 9 21 21 C 1.37619 * 119.74425 * 359.74616 * 20 11 10 22 22 C 1.52999 * 109.47244 * 184.99897 * 4 3 2 23 23 C 1.53004 * 109.47044 * 296.56728 * 22 4 3 24 24 C 1.53004 * 109.47014 * 56.56331 * 22 4 3 25 25 C 1.52993 * 109.47504 * 176.56329 * 22 4 3 26 26 H 1.09001 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47231 * 299.99635 * 1 2 3 28 28 H 1.09002 * 109.47276 * 60.00077 * 1 2 3 29 29 H 1.09003 * 109.47231 * 240.00365 * 2 1 3 30 30 H 1.09002 * 109.47276 * 119.99923 * 2 1 3 31 31 H 1.09003 * 109.46912 * 60.00170 * 3 2 1 32 32 H 1.08995 * 109.47246 * 299.99675 * 3 2 1 33 33 H 1.00897 * 111.00301 * 351.76329 * 6 4 3 34 34 H 1.09003 * 109.47498 * 56.99100 * 7 6 4 35 35 H 1.09000 * 109.47100 * 296.98785 * 7 6 4 36 36 H 1.08004 * 119.87225 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.12691 * 179.72137 * 10 9 8 38 38 H 0.96999 * 119.99789 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.12401 * 179.72808 * 20 11 10 40 40 H 1.07999 * 119.87422 * 180.02562 * 21 20 11 41 41 H 1.09004 * 109.47180 * 60.00029 * 23 22 4 42 42 H 1.08999 * 109.46964 * 179.97438 * 23 22 4 43 43 H 1.09003 * 109.46770 * 299.99414 * 23 22 4 44 44 H 1.09007 * 109.47001 * 59.99736 * 24 22 4 45 45 H 1.08999 * 109.47685 * 180.02562 * 24 22 4 46 46 H 1.09006 * 109.47108 * 300.00506 * 24 22 4 47 47 H 1.08999 * 109.47179 * 61.18601 * 25 22 4 48 48 H 1.09005 * 109.47109 * 181.17999 * 25 22 4 49 49 H 1.08999 * 109.46964 * 301.18073 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8531 0.8409 6 7 4.0591 0.8575 -1.2562 7 6 5.1030 -0.1435 -0.9989 8 6 5.5269 -0.7731 -2.3008 9 6 6.5654 -0.2140 -3.0294 10 6 6.9571 -0.7772 -4.2224 11 6 6.3060 -1.9309 -4.6968 12 6 6.7032 -2.5212 -5.9188 13 1 6.0013 -3.1158 -6.4846 14 6 8.0058 -2.3349 -6.3951 15 7 8.9452 -1.9189 -5.5851 16 14 8.4034 -2.6805 -8.1873 17 1 7.1759 -3.1362 -8.8876 18 1 8.9084 -1.4408 -8.8302 19 1 9.4421 -3.7388 -8.2687 20 6 5.2533 -2.4898 -3.9489 21 6 4.8752 -1.9069 -2.7609 22 6 4.0800 2.8796 0.1250 23 6 3.6412 3.6854 -1.0993 24 6 3.5011 3.5174 1.3896 25 6 5.6075 2.8729 0.2106 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.3005 0.4599 -1.7896 34 1 4.7123 -0.9132 -0.3333 35 1 5.9617 0.3388 -0.5320 36 1 7.0656 0.6698 -2.6618 37 1 7.7634 -0.3373 -4.7906 38 1 9.8482 -1.7902 -5.9151 39 1 4.7438 -3.3726 -4.3059 40 1 4.0678 -2.3344 -2.1850 41 1 2.5529 3.6902 -1.1602 42 1 4.0042 4.7092 -1.0095 43 1 4.0537 3.2310 -2.0002 44 1 3.8136 2.9432 2.2619 45 1 3.8641 4.5413 1.4790 46 1 2.4128 3.5221 1.3287 47 1 6.0205 2.4377 -0.6994 48 1 5.9697 3.8951 0.3212 49 1 5.9206 2.2814 1.0709 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617992606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:48 Heat of formation + Delta-G solvation = -18.107497 kcal Electronic energy + Delta-G solvation = -23464.016365 eV Core-core repulsion = 20389.052872 eV Total energy + Delta-G solvation = -3074.963493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.11429 -37.48395 -34.70234 -34.18763 -32.96022 -30.17187 -29.22016 -28.42906 -27.14474 -26.82855 -25.70230 -23.59832 -22.69084 -20.98339 -20.91008 -19.84462 -18.24615 -17.26204 -15.65805 -15.47226 -15.30577 -14.99132 -14.42403 -14.16606 -13.80534 -13.70229 -13.38805 -13.26359 -13.05489 -12.56417 -12.39372 -12.12533 -12.05563 -11.94497 -11.82020 -11.76178 -11.47277 -11.37790 -11.20581 -11.17516 -11.07053 -10.92812 -10.62334 -10.58508 -10.41305 -10.33060 -10.16987 -10.11388 -9.50499 -9.32018 -9.11408 -7.89146 -7.40312 -7.25930 -6.73112 -4.32045 2.76768 3.08634 3.11413 3.14256 3.19836 3.95378 4.48590 4.67393 4.76305 4.87844 4.99390 5.13439 5.17402 5.29717 5.45899 5.56663 5.62005 5.70033 5.71187 5.75820 5.79235 5.86565 5.88294 5.95915 5.97820 6.00505 6.01733 6.06170 6.17968 6.22512 6.26075 6.29713 6.36322 6.38588 6.45172 6.51958 6.63714 6.73942 6.99604 7.10656 7.33467 7.39872 7.55285 7.65324 7.82914 7.96534 8.09540 8.19346 8.33991 8.68453 8.93134 9.01575 10.21673 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.003479 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.499230 B = 8047.239565 C = 8838.123540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.134 4.134 4 C 0.095 3.905 5 H 0.049 0.951 6 N -0.674 5.674 7 C 0.124 3.876 8 C -0.211 4.211 9 C -0.079 4.079 10 C -0.166 4.166 11 C 0.112 3.888 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.794 5.794 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.227 4.227 21 C -0.086 4.086 22 C -0.054 4.054 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.137 4.137 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.015 0.985 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 7.740 10.372 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.172 4.172 4 C -0.015 4.015 5 H 0.067 0.933 6 N -0.306 5.306 7 C -0.003 4.003 8 C -0.212 4.212 9 C -0.098 4.098 10 C -0.186 4.186 11 C 0.110 3.890 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.730 3.270 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.201 1.201 20 C -0.247 4.247 21 C -0.105 4.105 22 C -0.055 4.055 23 C -0.190 4.190 24 C -0.202 4.202 25 C -0.195 4.195 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.976 8.284 10.265 15.954 hybrid contribution -0.180 -0.973 -0.383 1.061 sum -9.155 7.311 9.881 15.327 Atomic orbital electron populations 1.21742 0.95925 1.01449 1.01548 1.21593 0.95844 0.97196 1.02099 1.22111 0.95780 0.96625 1.02671 1.21578 0.92764 0.94853 0.92352 0.93316 1.60639 1.15244 1.37027 1.17725 1.20673 0.93799 0.91112 0.94740 1.18935 1.02914 1.00388 0.98986 1.20483 0.96142 0.97769 0.95360 1.21302 1.03049 0.97137 0.97065 1.17617 0.89845 0.89971 0.91569 1.19618 0.96544 1.28420 1.04827 0.90553 1.25895 0.96043 0.92907 0.99269 1.69839 1.02182 1.34202 1.35743 0.86304 0.79218 0.78774 0.82670 1.18445 1.19718 1.20058 1.20931 1.04615 1.02001 0.97115 1.20347 0.98107 0.95880 0.96189 1.20481 0.95601 0.94676 0.94727 1.21771 1.00191 0.98227 0.98806 1.21989 1.00640 1.00201 0.97414 1.21836 0.94877 1.00547 1.02204 0.92930 0.93067 0.92706 0.91756 0.92404 0.91360 0.91099 0.84079 0.96704 0.91900 0.89557 0.86658 0.91007 0.89284 0.90069 0.93576 0.94114 0.90786 0.93209 0.93016 0.92651 0.91053 0.93696 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.13 -1.38 5.79 -26.73 -0.15 -1.54 16 3 C -0.13 -1.42 3.91 -26.73 -0.10 -1.52 16 4 C 0.09 1.16 1.48 -67.71 -0.10 1.06 16 5 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 6 N -0.67 -10.04 4.94 -107.99 -0.53 -10.57 16 7 C 0.12 2.14 5.22 -4.97 -0.03 2.11 16 8 C -0.21 -4.48 5.38 -104.33 -0.56 -5.04 16 9 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 10 C -0.17 -4.33 8.69 -38.87 -0.34 -4.67 16 11 C 0.11 3.01 5.57 -106.82 -0.59 2.42 16 12 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 13 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 14 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 15 N -0.79 -20.71 10.97 55.55 0.61 -20.10 16 16 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 17 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 20 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 21 C -0.09 -1.90 9.67 -39.66 -0.38 -2.29 16 22 C -0.05 -0.63 0.62 -154.51 -0.10 -0.73 16 23 C -0.13 -1.59 8.00 37.16 0.30 -1.30 16 24 C -0.14 -1.43 8.04 37.16 0.30 -1.13 16 25 C -0.14 -1.74 7.64 37.15 0.28 -1.45 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.78 6.78 -51.93 -0.35 0.42 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.66 6.09 -51.93 -0.32 0.34 16 32 H 0.07 0.78 6.77 -51.93 -0.35 0.43 16 33 H 0.34 5.20 6.65 -39.29 -0.26 4.94 16 34 H 0.01 0.25 8.01 -51.93 -0.42 -0.17 16 35 H 0.06 1.08 6.66 -51.93 -0.35 0.73 16 36 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.12 3.13 6.20 -52.49 -0.33 2.80 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.08 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.05 0.51 6.63 -51.93 -0.34 0.17 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 1.05 7.51 -51.93 -0.39 0.66 16 44 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.51 6.26 -51.93 -0.32 0.18 16 47 H 0.07 1.06 6.80 -51.93 -0.35 0.70 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -26.11 375.97 -10.39 -36.50 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.79 Total: 8.93 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: -2.31 Total: -34.21 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.08 Total: -30.67 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -26.11 -10.39 -36.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617992606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.389 kcal (2) G-P(sol) polarization free energy of solvation -26.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds