Wall clock time and date at job start Tue Mar 31 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46837 * 2 1 4 4 C 1.52998 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47222 * 304.99759 * 4 3 2 6 6 N 1.46898 * 109.47289 * 65.00301 * 4 3 2 7 7 C 1.46902 * 110.99980 * 227.81387 * 6 4 3 8 8 C 1.50701 * 109.47099 * 176.99194 * 7 6 4 9 9 C 1.38630 * 119.75371 * 90.00091 * 8 7 6 10 10 C 1.37617 * 120.25304 * 180.27833 * 9 8 7 11 11 C 1.40714 * 119.74101 * 359.51288 * 10 9 8 12 12 C 1.41400 * 120.24357 * 180.23148 * 11 10 9 13 13 H 1.08001 * 120.00325 * 205.20437 * 12 11 10 14 14 C 1.39943 * 119.99897 * 25.20672 * 12 11 10 15 15 N 1.30831 * 120.00003 * 17.28758 * 14 12 11 16 16 Si 1.86805 * 120.00033 * 197.28149 * 14 12 11 17 17 H 1.48496 * 109.47000 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46753 * 120.00312 * 16 14 12 19 19 H 1.48498 * 109.46965 * 240.00289 * 16 14 12 20 20 C 1.40718 * 119.51200 * 0.48317 * 11 10 9 21 21 C 1.37619 * 119.74425 * 359.74616 * 20 11 10 22 22 C 1.52999 * 109.47244 * 184.99897 * 4 3 2 23 23 C 1.53004 * 109.47044 * 296.56728 * 22 4 3 24 24 C 1.53004 * 109.47014 * 56.56331 * 22 4 3 25 25 C 1.52993 * 109.47504 * 176.56329 * 22 4 3 26 26 H 1.09001 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47231 * 299.99635 * 1 2 3 28 28 H 1.09002 * 109.47276 * 60.00077 * 1 2 3 29 29 H 1.09003 * 109.47231 * 240.00365 * 2 1 3 30 30 H 1.09002 * 109.47276 * 119.99923 * 2 1 3 31 31 H 1.09003 * 109.46912 * 60.00170 * 3 2 1 32 32 H 1.08995 * 109.47246 * 299.99675 * 3 2 1 33 33 H 1.00897 * 111.00301 * 351.76329 * 6 4 3 34 34 H 1.09003 * 109.47498 * 56.99100 * 7 6 4 35 35 H 1.09000 * 109.47100 * 296.98785 * 7 6 4 36 36 H 1.08004 * 119.87225 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.12691 * 179.72137 * 10 9 8 38 38 H 0.96999 * 119.99789 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.12401 * 179.72808 * 20 11 10 40 40 H 1.07999 * 119.87422 * 180.02562 * 21 20 11 41 41 H 1.09004 * 109.47180 * 60.00029 * 23 22 4 42 42 H 1.08999 * 109.46964 * 179.97438 * 23 22 4 43 43 H 1.09003 * 109.46770 * 299.99414 * 23 22 4 44 44 H 1.09007 * 109.47001 * 59.99736 * 24 22 4 45 45 H 1.08999 * 109.47685 * 180.02562 * 24 22 4 46 46 H 1.09006 * 109.47108 * 300.00506 * 24 22 4 47 47 H 1.08999 * 109.47179 * 61.18601 * 25 22 4 48 48 H 1.09005 * 109.47109 * 181.17999 * 25 22 4 49 49 H 1.08999 * 109.46964 * 301.18073 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8531 0.8409 6 7 4.0591 0.8575 -1.2562 7 6 5.1030 -0.1435 -0.9989 8 6 5.5269 -0.7731 -2.3008 9 6 6.5654 -0.2140 -3.0294 10 6 6.9571 -0.7772 -4.2224 11 6 6.3060 -1.9309 -4.6968 12 6 6.7032 -2.5212 -5.9188 13 1 6.0013 -3.1158 -6.4846 14 6 8.0058 -2.3349 -6.3951 15 7 8.9452 -1.9189 -5.5851 16 14 8.4034 -2.6805 -8.1873 17 1 7.1759 -3.1362 -8.8876 18 1 8.9084 -1.4408 -8.8302 19 1 9.4421 -3.7388 -8.2687 20 6 5.2533 -2.4898 -3.9489 21 6 4.8752 -1.9069 -2.7609 22 6 4.0800 2.8796 0.1250 23 6 3.6412 3.6854 -1.0993 24 6 3.5011 3.5174 1.3896 25 6 5.6075 2.8729 0.2106 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.3005 0.4599 -1.7896 34 1 4.7123 -0.9132 -0.3333 35 1 5.9617 0.3388 -0.5320 36 1 7.0656 0.6698 -2.6618 37 1 7.7634 -0.3373 -4.7906 38 1 9.8482 -1.7902 -5.9151 39 1 4.7438 -3.3726 -4.3059 40 1 4.0678 -2.3344 -2.1850 41 1 2.5529 3.6902 -1.1602 42 1 4.0042 4.7092 -1.0095 43 1 4.0537 3.2310 -2.0002 44 1 3.8136 2.9432 2.2619 45 1 3.8641 4.5413 1.4790 46 1 2.4128 3.5221 1.3287 47 1 6.0205 2.4377 -0.6994 48 1 5.9697 3.8951 0.3212 49 1 5.9206 2.2814 1.0709 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617992606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:47 Heat of formation + Delta-G solvation = -28.756980 kcal Electronic energy + Delta-G solvation = -23464.478161 eV Core-core repulsion = 20389.052872 eV Total energy + Delta-G solvation = -3075.425289 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22880 -39.22496 -36.07225 -35.39705 -34.42548 -31.79501 -31.09953 -29.58595 -28.13309 -27.95484 -27.08191 -24.89069 -23.97359 -22.81708 -21.86132 -21.60278 -19.24270 -19.19324 -17.18862 -16.82109 -16.48631 -16.12959 -15.70751 -15.43204 -15.32332 -15.25165 -14.65473 -14.38588 -14.15358 -13.92738 -13.79831 -13.51498 -13.36739 -13.26132 -13.02450 -12.92554 -12.75301 -12.65561 -12.61744 -12.33633 -12.26373 -12.12975 -12.03329 -11.95246 -11.50917 -11.49799 -11.35694 -11.22394 -11.10611 -11.00490 -10.98236 -9.31916 -9.25400 -9.00089 -8.62017 -6.31643 0.97149 1.17558 1.37670 1.50082 1.53077 2.21346 2.72077 3.45706 3.78441 3.82993 3.97115 4.14707 4.22746 4.31275 4.33912 4.39021 4.40395 4.58534 4.59727 4.66932 4.74375 4.81799 4.84380 4.88195 4.92614 4.95172 4.97037 5.05573 5.08340 5.12861 5.18130 5.20277 5.22561 5.29812 5.33198 5.37548 5.41634 5.47195 5.49171 5.50805 5.65394 5.73846 5.74390 5.98552 6.12833 6.26751 6.39258 6.42377 6.68233 6.73957 6.96727 7.06957 8.35372 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.003479 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.499230 B = 8047.239565 C = 8838.123540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.126 4.126 4 C 0.097 3.903 5 H 0.047 0.953 6 N -0.677 5.677 7 C 0.135 3.865 8 C -0.195 4.195 9 C -0.084 4.084 10 C -0.190 4.190 11 C 0.080 3.920 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.828 5.828 16 Si 0.981 3.019 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.242 4.242 21 C -0.085 4.085 22 C -0.054 4.054 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.136 4.136 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.338 0.662 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.287 0.713 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.052 0.948 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 8.507 11.750 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.164 4.164 4 C -0.013 4.013 5 H 0.065 0.935 6 N -0.309 5.309 7 C 0.007 3.993 8 C -0.197 4.197 9 C -0.103 4.103 10 C -0.209 4.209 11 C 0.078 3.922 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.454 5.454 16 Si 0.802 3.198 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.262 4.262 21 C -0.104 4.104 22 C -0.054 4.054 23 C -0.186 4.186 24 C -0.197 4.197 25 C -0.193 4.193 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.401 9.057 11.662 18.061 hybrid contribution 0.199 -1.151 -0.656 1.340 sum -10.202 7.906 11.006 16.962 Atomic orbital electron populations 1.21721 0.94799 1.01777 1.02141 1.21571 0.96849 0.96957 1.01256 1.22048 0.94191 0.96805 1.03336 1.21631 0.94058 0.94881 0.90714 0.93496 1.60549 1.14970 1.36015 1.19387 1.20524 0.94722 0.91743 0.92319 1.19359 1.01063 0.99464 0.99767 1.20687 0.96772 0.98130 0.94732 1.21246 1.03447 0.97823 0.98393 1.17946 0.91126 0.90693 0.92483 1.19848 0.97610 1.30092 1.05841 0.90941 1.26739 0.95302 0.92274 1.03630 1.69893 1.02758 1.35035 1.37741 0.85184 0.79019 0.78934 0.76700 1.18232 1.18921 1.19006 1.21143 1.04470 1.02500 0.98082 1.20656 0.98553 0.95735 0.95431 1.20496 0.94927 0.94343 0.95678 1.21718 1.00705 0.98404 0.97781 1.21936 1.01235 1.00379 0.96193 1.21811 0.95700 1.00878 1.00923 0.92804 0.91880 0.92702 0.93396 0.92413 0.89652 0.91348 0.84263 0.95608 0.91783 0.88355 0.88650 0.90283 0.88840 0.86988 0.92562 0.93443 0.93380 0.92749 0.92390 0.91522 0.93644 0.92875 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.13 -2.44 5.79 30.60 0.18 -2.26 16 3 C -0.13 -2.33 3.91 30.60 0.12 -2.21 16 4 C 0.10 2.16 1.48 44.91 0.07 2.23 16 5 H 0.05 1.10 7.54 -2.39 -0.02 1.08 16 6 N -0.68 -19.21 4.94 -495.58 -2.45 -21.66 16 7 C 0.14 4.43 5.22 85.56 0.45 4.88 16 8 C -0.20 -8.18 5.38 -19.68 -0.11 -8.28 16 9 C -0.08 -4.00 9.67 22.22 0.21 -3.78 16 10 C -0.19 -10.29 8.69 22.73 0.20 -10.10 16 11 C 0.08 4.44 5.57 -21.29 -0.12 4.32 16 12 C -0.50 -28.11 9.05 23.46 0.21 -27.90 16 13 H 0.07 3.92 7.90 -2.91 -0.02 3.90 16 14 C 0.03 1.81 5.15 85.26 0.44 2.25 16 15 N -0.83 -44.65 10.97 21.83 0.24 -44.41 16 16 Si 0.98 39.33 29.59 68.60 2.03 41.36 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 20 C -0.24 -12.13 9.80 22.73 0.22 -11.91 16 21 C -0.09 -3.69 9.67 22.22 0.21 -3.48 16 22 C -0.05 -1.13 0.62 -52.18 -0.03 -1.17 16 23 C -0.13 -2.88 8.00 71.98 0.58 -2.30 16 24 C -0.14 -2.31 8.04 71.98 0.58 -1.73 16 25 C -0.14 -3.24 7.64 71.98 0.55 -2.69 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.07 6.78 -2.39 -0.02 1.05 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.32 6.09 -2.39 -0.01 1.31 16 32 H 0.07 1.33 6.77 -2.39 -0.02 1.31 16 33 H 0.34 9.88 6.65 -89.70 -0.60 9.28 16 34 H 0.03 0.80 8.01 -2.39 -0.02 0.78 16 35 H 0.06 2.11 6.66 -2.39 -0.02 2.10 16 36 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.10 5.47 6.20 -2.91 -0.02 5.45 16 38 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 39 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 41 H 0.06 1.12 6.63 -2.39 -0.02 1.11 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 1.32 7.51 -2.39 -0.02 1.31 16 44 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 0.96 6.26 -2.38 -0.01 0.94 16 47 H 0.04 1.31 6.80 -2.39 -0.02 1.30 16 48 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -58.03 375.97 4.60 -53.43 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.30 Total: 37.05 kcal Atomic # 6 Polarization: -70.24 SS G_CDS: 4.47 Total: -65.77 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -2.21 Total: -66.07 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -58.03 4.60 -53.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617992606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -58.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds